File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/6f3dce32317fb904c8a26cd3f60161/.command.log
Size
7.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bIB-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/86a50d386ebf575a78391d9dc7c5cc/659_bIB-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/6f3dce32317fb904c8a26cd3f60161/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/b0cb9d558d35aa9e07009f55313b64/659_bIB-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/6f3dce32317fb904c8a26cd3f60161/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PTPRK--RSPO3
starfusion
arriba
CD2AP--FILNC1
starfusion
arriba
ZFAND3--MRS2
starfusion
arriba
ZFAND3--AL356534.1
starfusion
arriba
SLC2A13--DCDC2
starfusion
arriba
REPS1--ECHDC1
starfusion
arriba
UTRN--AL138828.1
starfusion
arriba
TRERF1--RIPOR2
starfusion
arriba
PRSS27--TPSB2
starfusion
PHF3--KIAA0408
starfusion
arriba
HAS3--CYB5B
starfusion
UBA6--NAA11
starfusion
TLK2--AC240565.1
starfusion
LINC00271--ALDH5A1
starfusion
arriba
SNU13--LLPH
starfusion
HECA--UTRN
starfusion
arriba
PPFIBP1--TRERF1
starfusion
FOXP4--FOXP4
arriba
CUL9--AL592429.2
arriba
PTPRK--AL445250.1
arriba
AC092807.3--DDAH1
arriba
NFYA--KIAA0408
arriba
NFYA--SOGA3
arriba
CARMIL1--AL356534.1
arriba
TVP23C--CDRT4
arriba
PTPRK--AL356534.1
arriba
ARFGEF3--AL590652.1
arriba
AC015911.9--SLFN12L
arriba
SENP3--ASGR2
arriba
ALOX5--AC026884.1
arriba
ALOX5--IPMK
arriba
PHF3--ADGRF2
arriba
GTF2A1L--STON1-GTF2A1L
arriba

  0%|          | 0/33 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   0%|          | 0/33 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   3%|▎         | 1/33 [00:00<00:03,  9.21it/s]
Processing CD2AP--FILNC1:   3%|▎         | 1/33 [00:00<00:03,  9.21it/s]
Processing CD2AP--FILNC1:   6%|▌         | 2/33 [00:00<00:03,  9.45it/s]
Processing ZFAND3--MRS2:   6%|▌         | 2/33 [00:00<00:03,  9.45it/s] 
Processing ZFAND3--MRS2:   9%|▉         | 3/33 [00:00<00:03,  9.53it/s]
Processing ZFAND3--AL356534.1:   9%|▉         | 3/33 [00:00<00:03,  9.53it/s]
Processing ZFAND3--AL356534.1:  12%|█▏        | 4/33 [00:00<00:03,  9.56it/s]
Processing SLC2A13--DCDC2:  12%|█▏        | 4/33 [00:00<00:03,  9.56it/s]    
Processing SLC2A13--DCDC2:  15%|█▌        | 5/33 [00:00<00:02,  9.59it/s]
Processing REPS1--ECHDC1:  15%|█▌        | 5/33 [00:00<00:02,  9.59it/s] 
Processing REPS1--ECHDC1:  18%|█▊        | 6/33 [00:00<00:02,  9.60it/s]
Processing UTRN--AL138828.1:  18%|█▊        | 6/33 [00:00<00:02,  9.60it/s]
Processing UTRN--AL138828.1:  21%|██        | 7/33 [00:00<00:02,  9.61it/s]
Processing TRERF1--RIPOR2:  21%|██        | 7/33 [00:00<00:02,  9.61it/s]  
Processing TRERF1--RIPOR2:  24%|██▍       | 8/33 [00:00<00:02,  9.61it/s]
Processing PRSS27--TPSB2:  24%|██▍       | 8/33 [00:00<00:02,  9.61it/s] 
Processing PRSS27--TPSB2:  27%|██▋       | 9/33 [00:00<00:02,  9.62it/s]
Processing PHF3--KIAA0408:  27%|██▋       | 9/33 [00:00<00:02,  9.62it/s]
Processing PHF3--KIAA0408:  30%|███       | 10/33 [00:01<00:02,  9.62it/s]
Processing HAS3--CYB5B:  30%|███       | 10/33 [00:01<00:02,  9.62it/s]   
Processing HAS3--CYB5B:  33%|███▎      | 11/33 [00:01<00:02,  9.63it/s]
Processing UBA6--NAA11:  33%|███▎      | 11/33 [00:01<00:02,  9.63it/s]
Processing UBA6--NAA11:  36%|███▋      | 12/33 [00:01<00:02,  9.63it/s]
Processing TLK2--AC240565.1:  36%|███▋      | 12/33 [00:01<00:02,  9.63it/s]
Processing TLK2--AC240565.1:  39%|███▉      | 13/33 [00:01<00:02,  9.63it/s]
Processing LINC00271--ALDH5A1:  39%|███▉      | 13/33 [00:01<00:02,  9.63it/s]
Processing LINC00271--ALDH5A1:  42%|████▏     | 14/33 [00:01<00:01,  9.63it/s]
Processing SNU13--LLPH:  42%|████▏     | 14/33 [00:01<00:01,  9.63it/s]       
Processing SNU13--LLPH:  45%|████▌     | 15/33 [00:01<00:01,  9.63it/s]
Processing HECA--UTRN:  45%|████▌     | 15/33 [00:01<00:01,  9.63it/s] 
Processing HECA--UTRN:  48%|████▊     | 16/33 [00:01<00:01,  9.63it/s]
Processing PPFIBP1--TRERF1:  48%|████▊     | 16/33 [00:01<00:01,  9.63it/s]
Processing PPFIBP1--TRERF1:  52%|█████▏    | 17/33 [00:01<00:01,  9.63it/s]
Processing FOXP4--FOXP4:  52%|█████▏    | 17/33 [00:01<00:01,  9.63it/s]   
Processing FOXP4--FOXP4:  55%|█████▍    | 18/33 [00:01<00:01,  9.63it/s]
Processing CUL9--AL592429.2:  55%|█████▍    | 18/33 [00:01<00:01,  9.63it/s]
Processing CUL9--AL592429.2:  58%|█████▊    | 19/33 [00:01<00:01,  9.63it/s]
Processing PTPRK--AL445250.1:  58%|█████▊    | 19/33 [00:01<00:01,  9.63it/s]
Processing PTPRK--AL445250.1:  61%|██████    | 20/33 [00:02<00:01,  9.63it/s]
Processing AC092807.3--DDAH1:  61%|██████    | 20/33 [00:02<00:01,  9.63it/s]
Processing AC092807.3--DDAH1:  64%|██████▎   | 21/33 [00:02<00:01,  9.63it/s]
Processing NFYA--KIAA0408:  64%|██████▎   | 21/33 [00:02<00:01,  9.63it/s]   
Processing NFYA--KIAA0408:  67%|██████▋   | 22/33 [00:02<00:01,  9.63it/s]
Processing NFYA--SOGA3:  67%|██████▋   | 22/33 [00:02<00:01,  9.63it/s]   
Processing NFYA--SOGA3:  70%|██████▉   | 23/33 [00:02<00:01,  9.63it/s]
Processing CARMIL1--AL356534.1:  70%|██████▉   | 23/33 [00:02<00:01,  9.63it/s]
Processing CARMIL1--AL356534.1:  73%|███████▎  | 24/33 [00:02<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  73%|███████▎  | 24/33 [00:02<00:00,  9.63it/s]      
Processing TVP23C--CDRT4:  76%|███████▌  | 25/33 [00:02<00:00,  9.63it/s]
Processing PTPRK--AL356534.1:  76%|███████▌  | 25/33 [00:02<00:00,  9.63it/s]
Processing PTPRK--AL356534.1:  79%|███████▉  | 26/33 [00:02<00:00,  9.63it/s]
Processing ARFGEF3--AL590652.1:  79%|███████▉  | 26/33 [00:02<00:00,  9.63it/s]
Processing ARFGEF3--AL590652.1:  82%|████████▏ | 27/33 [00:02<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  82%|████████▏ | 27/33 [00:02<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  85%|████████▍ | 28/33 [00:02<00:00,  9.63it/s]
Processing SENP3--ASGR2:  85%|████████▍ | 28/33 [00:02<00:00,  9.63it/s]       
Processing SENP3--ASGR2:  88%|████████▊ | 29/33 [00:03<00:00,  9.63it/s]
Processing ALOX5--AC026884.1:  88%|████████▊ | 29/33 [00:03<00:00,  9.63it/s]
Processing ALOX5--AC026884.1:  91%|█████████ | 30/33 [00:03<00:00,  9.63it/s]
Processing ALOX5--IPMK:  91%|█████████ | 30/33 [00:03<00:00,  9.63it/s]      
Processing ALOX5--IPMK:  94%|█████████▍| 31/33 [00:03<00:00,  9.63it/s]
Processing PHF3--ADGRF2:  94%|█████████▍| 31/33 [00:03<00:00,  9.63it/s]
Processing PHF3--ADGRF2:  97%|█████████▋| 32/33 [00:03<00:00,  9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L:  97%|█████████▋| 32/33 [00:03<00:00,  9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 33/33 [00:03<00:00,  9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 33/33 [00:03<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory