Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/374056476ef3849f9f17abc0603802/659_R1-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/e4534b8c49bac548f4a238bc250145/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/e4534b8c49bac548f4a238bc250145/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory