Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/a71455d8380602a6a5c204043f25cf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/e2276aeca671ed3728fb599ce4ff4c/659_cWx-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/a71455d8380602a6a5c204043f25cf/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory