Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/4f10624b6d9515efa74a796484065a/659_end-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/78366245da235f724097fd79e3a4cf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/78366245da235f724097fd79e3a4cf/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory