File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/52018d195582cd4d8b72cb03bb2c7c/.command.log
Size
1.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_8h-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/d33bc63f9d672642cc5d74171216f1/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/52018d195582cd4d8b72cb03bb2c7c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/52018d195582cd4d8b72cb03bb2c7c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/c8d6e2baece2b1cdc4db5c596e034e/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 151
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	151
Known Splicing Events:	77
Partial Novel Splicing Events:	0
Novel Splicing Events:	74
Filtered Splicing Events:	0

Total splicing  Junctions:	21
Known Splicing Junctions:	6
Partial Novel Splicing Junctions:	0
Novel Splicing Junctions:	15

===================================================================
Create BED file ...
Create Interact file ...