Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/5b754931d74af53caf11cab5fb68c8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/897cc3ebb3022f89c0767cb323a467/659_ecd-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/5b754931d74af53caf11cab5fb68c8/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292376580
unpaired = 5211327
MERGED PAIRED END READS = 292376580
MATES PROCESSED = 589964487
TOTAL READS     = 297587907
DISTINCT READS  = 1.62744e+08
DISTINCT COUNTS = 778
MAX COUNT       = 1293244
COUNTS OF 1     = 1.0657e+08
MAX TERMS       = 100
OBSERVED COUNTS (1293245)
1	106569714
2	31826446
3	11533047
4	5000409
5	2538604
6	1461035
7	918786
8	618275
9	437360
10	323062
11	243915
12	190350
13	149990
14	121745
15	99693
16	81994
17	68784
18	58434
19	49587
20	42935
21	37114
22	32393
23	28438
24	25408
25	22193
26	19816
27	17926
28	16129
29	14294
30	13177
31	11901
32	10800
33	9732
34	9003
35	8348
36	7362
37	6982
38	6426
39	5876
40	5381
41	5045
42	4629
43	4392
44	4129
45	3843
46	3657
47	3313
48	3164
49	3011
50	2851
51	2642
52	2378
53	2302
54	2101
55	2121
56	1939
57	1821
58	1842
59	1671
60	1625
61	1451
62	1396
63	1374
64	1301
65	1269
66	1133
67	1113
68	1091
69	1038
70	1020
71	995
72	939
73	882
74	849
75	772
76	754
77	738
78	718
79	670
80	618
81	645
82	622
83	558
84	581
85	540
86	528
87	509
88	496
89	456
90	454
91	453
92	436
93	406
94	403
95	368
96	352
97	352
98	325
99	297
100	306
101	296
102	283
103	279
104	276
105	275
106	278
107	243
108	238
109	213
110	215
111	228
112	227
113	217
114	206
115	204
116	184
117	188
118	167
119	170
120	189
121	188
122	178
123	165
124	168
125	148
126	176
127	142
128	154
129	138
130	142
131	118
132	125
133	128
134	97
135	119
136	106
137	120
138	110
139	124
140	109
141	117
142	105
143	115
144	100
145	74
146	87
147	89
148	95
149	79
150	91
151	80
152	84
153	94
154	77
155	90
156	74
157	70
158	76
159	69
160	76
161	67
162	78
163	69
164	63
165	87
166	59
167	54
168	66
169	68
170	55
171	64
172	64
173	51
174	53
175	45
176	59
177	49
178	66
179	50
180	42
181	34
182	37
183	46
184	49
185	48
186	45
187	34
188	43
189	44
190	42
191	54
192	40
193	32
194	37
195	26
196	33
197	30
198	40
199	35
200	35
201	36
202	36
203	32
204	23
205	28
206	38
207	34
208	28
209	18
210	20
211	29
212	18
213	21
214	23
215	22
216	23
217	27
218	29
219	27
220	25
221	30
222	24
223	21
224	13
225	16
226	32
227	25
228	16
229	23
230	16
231	21
232	21
233	15
234	22
235	32
236	24
237	12
238	19
239	16
240	18
241	22
242	13
243	21
244	23
245	17
246	16
247	21
248	15
249	17
250	21
251	24
252	16
253	10
254	17
255	16
256	15
257	11
258	11
259	15
260	13
261	12
262	16
263	14
264	17
265	14
266	14
267	16
268	9
269	9
270	13
271	13
272	9
273	15
274	14
275	11
276	14
277	8
278	11
279	9
280	8
281	9
282	6
283	8
284	12
285	6
286	13
287	9
288	7
289	4
290	9
291	13
292	6
293	13
294	13
295	11
296	6
297	8
298	14
299	9
300	10
301	12
302	8
303	10
304	13
305	2
306	9
307	4
308	7
309	13
310	7
311	11
312	6
313	4
314	7
315	5
316	6
317	5
318	8
319	8
320	5
321	9
322	8
323	6
324	11
325	5
326	3
327	3
328	9
329	5
330	6
331	5
332	7
333	5
334	6
335	4
336	5
337	5
338	3
339	6
340	5
341	5
342	3
343	2
344	8
345	7
347	3
348	3
349	3
350	5
351	7
352	7
353	5
354	5
355	5
356	4
357	5
358	2
359	4
361	6
362	3
363	5
364	4
365	8
366	4
367	2
368	4
369	1
370	2
371	8
372	3
373	6
374	8
376	2
377	3
378	11
379	1
380	2
381	3
382	8
383	3
384	3
385	4
386	4
387	3
388	2
389	2
390	4
391	7
392	2
393	2
394	2
395	1
396	3
397	3
398	3
399	6
400	1
401	2
402	2
403	1
404	4
405	5
406	2
407	6
408	2
409	4
410	2
411	2
412	2
413	3
414	2
415	4
416	2
418	1
419	1
420	4
421	4
423	5
424	3
425	1
426	2
427	4
428	3
429	2
430	1
431	2
432	6
434	1
435	2
436	5
437	4
438	3
439	2
440	1
441	2
442	2
444	1
445	1
446	2
447	1
448	1
449	2
450	1
451	3
452	2
453	3
454	2
455	6
456	1
457	5
458	2
459	1
460	1
461	2
462	5
463	2
464	3
465	1
467	1
468	3
469	4
471	1
472	3
473	2
474	1
476	2
477	4
478	4
479	2
481	2
483	2
485	1
486	1
487	1
488	1
489	2
490	4
491	1
492	3
495	3
497	4
500	1
501	2
504	2
505	1
506	2
507	3
508	1
509	5
510	1
511	1
512	1
513	1
514	3
515	2
516	1
517	3
518	1
519	1
520	1
521	3
522	2
523	2
524	1
525	2
526	1
527	2
529	2
531	1
532	2
533	2
534	2
541	1
543	1
544	2
547	1
548	2
551	2
553	3
554	1
555	1
559	3
561	2
562	3
565	2
567	1
568	1
569	1
573	2
574	1
576	3
577	1
578	2
581	1
582	1
583	1
584	1
585	1
588	2
590	1
591	1
592	1
593	1
594	1
595	1
596	1
598	1
599	3
601	1
602	1
603	1
604	3
608	2
610	1
611	2
614	1
616	1
619	1
620	2
622	1
623	1
624	1
627	1
628	1
629	1
634	1
637	1
639	2
640	2
652	1
654	2
659	3
662	1
663	1
667	1
668	1
673	1
676	1
677	1
682	1
690	2
695	1
698	1
699	2
704	1
707	1
709	2
713	1
714	1
715	1
717	1
718	2
722	1
728	1
729	1
732	1
737	1
739	1
740	1
743	1
744	1
745	3
748	1
749	1
751	1
754	1
757	1
764	1
766	1
769	1
773	1
776	2
781	1
783	1
789	1
793	1
794	1
808	1
811	1
816	1
826	1
828	1
830	1
839	1
840	1
846	1
851	1
852	1
855	1
866	1
871	1
876	2
877	1
879	1
881	1
886	1
888	1
890	1
893	1
899	1
902	1
903	1
905	1
917	1
921	1
929	1
935	1
952	1
953	1
958	1
966	1
970	1
983	1
989	1
991	1
994	1
1025	1
1027	1
1036	1
1041	1
1044	1
1045	1
1052	1
1059	1
1062	1
1067	1
1082	1
1084	1
1103	1
1130	1
1145	1
1147	1
1164	1
1171	1
1173	1
1178	1
1180	1
1193	1
1194	1
1199	1
1238	1
1266	1
1267	1
1268	1
1274	1
1275	1
1276	1
1291	1
1297	1
1315	1
1316	1
1360	1
1373	2
1379	1
1387	1
1407	1
1428	1
1430	1
1436	1
1438	1
1465	1
1478	1
1480	1
1486	1
1493	1
1495	1
1512	1
1519	1
1526	2
1529	1
1542	1
1544	1
1570	1
1587	1
1625	1
1677	1
1699	1
1700	1
1702	1
1709	1
1732	1
1733	2
1753	1
1759	1
1780	1
1790	1
1795	1
1804	1
1817	1
1821	1
1833	1
1844	1
1853	1
1855	1
1874	1
1898	1
1912	1
1918	1
1928	1
1936	1
1965	1
2013	1
2031	1
2046	1
2062	1
2069	1
2072	1
2082	1
2104	1
2108	1
2150	1
2182	1
2185	1
2211	1
2238	1
2241	1
2256	1
2344	1
2345	1
2395	1
2697	1
2705	1
2793	1
2954	1
2998	1
3133	1
3174	1
3187	1
3251	1
3272	1
3501	1
4249	1
6016	1
6468	1
7464	1
9541	1
24402	1
1293244	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.................................._.....................................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]