Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/cfa7fab9c5e983c7684d58e8f8ad19/659_ePR-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/7ba096582380ebc9f8b804e2dc6aba/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/7ba096582380ebc9f8b804e2dc6aba/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_ePR-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_ePR-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_ePR-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
21:44:42.017 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Thu Jun 04 21:44:42 GMT 2026] MarkDuplicates --INPUT 659_ePR-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_ePR-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_ePR-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Jun 04 21:44:42 GMT 2026] Executing as ?@nf-1f7ba096582380ebc9f8b804e2dc6aba-ad2c4-tvbsm on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-04 21:44:42 MarkDuplicates Start of doWork freeMemory: 105803576; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-04 21:44:42 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-04 21:44:42 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-04 21:44:47 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,050,737
INFO 2026-06-04 21:44:47 MarkDuplicates Tracking 3684 as yet unmatched pairs. 1590 records in RAM.
INFO 2026-06-04 21:44:49 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:1,629,687
INFO 2026-06-04 21:44:49 MarkDuplicates Tracking 4807 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-04 21:44:51 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:6,207,424
INFO 2026-06-04 21:44:51 MarkDuplicates Tracking 6539 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-04 21:44:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,362,692
INFO 2026-06-04 21:44:53 MarkDuplicates Tracking 9013 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-04 21:44:55 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,747,449
INFO 2026-06-04 21:44:55 MarkDuplicates Tracking 10666 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-04 21:44:57 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:13,749,402
INFO 2026-06-04 21:44:57 MarkDuplicates Tracking 12424 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-04 21:44:58 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:16,393,260
INFO 2026-06-04 21:44:58 MarkDuplicates Tracking 14808 as yet unmatched pairs. 549 records in RAM.
INFO 2026-06-04 21:45:00 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,682,722
INFO 2026-06-04 21:45:00 MarkDuplicates Tracking 16162 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-04 21:45:02 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,824,137
INFO 2026-06-04 21:45:02 MarkDuplicates Tracking 19004 as yet unmatched pairs. 951 records in RAM.
INFO 2026-06-04 21:45:04 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:21,887,260
INFO 2026-06-04 21:45:04 MarkDuplicates Tracking 21737 as yet unmatched pairs. 1617 records in RAM.
INFO 2026-06-04 21:45:05 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:23,978,684
INFO 2026-06-04 21:45:05 MarkDuplicates Tracking 22650 as yet unmatched pairs. 696 records in RAM.
INFO 2026-06-04 21:45:07 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:26,731,324
INFO 2026-06-04 21:45:07 MarkDuplicates Tracking 24715 as yet unmatched pairs. 952 records in RAM.
INFO 2026-06-04 21:45:09 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:27,668,481
INFO 2026-06-04 21:45:09 MarkDuplicates Tracking 26366 as yet unmatched pairs. 731 records in RAM.
INFO 2026-06-04 21:45:11 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:31,654,804
INFO 2026-06-04 21:45:11 MarkDuplicates Tracking 28058 as yet unmatched pairs. 485 records in RAM.
INFO 2026-06-04 21:45:13 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:32,772,254
INFO 2026-06-04 21:45:13 MarkDuplicates Tracking 29839 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-04 21:45:14 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:36,171,305
INFO 2026-06-04 21:45:14 MarkDuplicates Tracking 31870 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-04 21:45:17 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:39,333,970
INFO 2026-06-04 21:45:17 MarkDuplicates Tracking 33948 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-04 21:45:19 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:39,569,914
INFO 2026-06-04 21:45:19 MarkDuplicates Tracking 35559 as yet unmatched pairs. 331 records in RAM.
INFO 2026-06-04 21:45:20 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:43,430,723
INFO 2026-06-04 21:45:20 MarkDuplicates Tracking 37398 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-04 21:45:22 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:45,005,862
INFO 2026-06-04 21:45:22 MarkDuplicates Tracking 39403 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-04 21:45:24 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:48,436,502
INFO 2026-06-04 21:45:24 MarkDuplicates Tracking 41284 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-04 21:45:26 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:54,047,334
INFO 2026-06-04 21:45:26 MarkDuplicates Tracking 43581 as yet unmatched pairs. 688 records in RAM.
INFO 2026-06-04 21:45:28 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:61,359,260
INFO 2026-06-04 21:45:28 MarkDuplicates Tracking 46419 as yet unmatched pairs. 1639 records in RAM.
INFO 2026-06-04 21:45:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:70,354,052
INFO 2026-06-04 21:45:30 MarkDuplicates Tracking 46928 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-04 21:45:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:86,376,343
INFO 2026-06-04 21:45:31 MarkDuplicates Tracking 48601 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-04 21:45:33 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:94,903,462
INFO 2026-06-04 21:45:33 MarkDuplicates Tracking 50971 as yet unmatched pairs. 795 records in RAM.
INFO 2026-06-04 21:45:35 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:109,258,909
INFO 2026-06-04 21:45:35 MarkDuplicates Tracking 52267 as yet unmatched pairs. 431 records in RAM.
INFO 2026-06-04 21:45:37 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:112,696,761
INFO 2026-06-04 21:45:37 MarkDuplicates Tracking 53970 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-04 21:45:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:114,733,813
INFO 2026-06-04 21:45:39 MarkDuplicates Tracking 56821 as yet unmatched pairs. 1278 records in RAM.
INFO 2026-06-04 21:45:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,797
INFO 2026-06-04 21:45:41 MarkDuplicates Tracking 58893 as yet unmatched pairs. 1531 records in RAM.
INFO 2026-06-04 21:45:42 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:119,986,914
INFO 2026-06-04 21:45:42 MarkDuplicates Tracking 60331 as yet unmatched pairs. 1141 records in RAM.
INFO 2026-06-04 21:45:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:145,993,392
INFO 2026-06-04 21:45:44 MarkDuplicates Tracking 60373 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-04 21:45:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:147,179,244
INFO 2026-06-04 21:45:46 MarkDuplicates Tracking 61483 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-04 21:45:48 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:149,390,878
INFO 2026-06-04 21:45:48 MarkDuplicates Tracking 62780 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-04 21:45:50 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:150,509,700
INFO 2026-06-04 21:45:50 MarkDuplicates Tracking 71046 as yet unmatched pairs. 7332 records in RAM.
INFO 2026-06-04 21:45:52 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,733,030
INFO 2026-06-04 21:45:52 MarkDuplicates Tracking 65954 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-04 21:45:53 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:151,428,123
INFO 2026-06-04 21:45:53 MarkDuplicates Tracking 68769 as yet unmatched pairs. 1408 records in RAM.
INFO 2026-06-04 21:45:55 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:153,642,281
INFO 2026-06-04 21:45:55 MarkDuplicates Tracking 69023 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-04 21:45:57 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:154,266,500
INFO 2026-06-04 21:45:57 MarkDuplicates Tracking 71076 as yet unmatched pairs. 563 records in RAM.
INFO 2026-06-04 21:45:59 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:155,169,461
INFO 2026-06-04 21:45:59 MarkDuplicates Tracking 73488 as yet unmatched pairs. 1036 records in RAM.
INFO 2026-06-04 21:46:02 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:155,950,854
INFO 2026-06-04 21:46:02 MarkDuplicates Tracking 75405 as yet unmatched pairs. 1309 records in RAM.
INFO 2026-06-04 21:46:04 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,138,587
INFO 2026-06-04 21:46:04 MarkDuplicates Tracking 82058 as yet unmatched pairs. 5640 records in RAM.
INFO 2026-06-04 21:46:06 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:158,183,984
INFO 2026-06-04 21:46:06 MarkDuplicates Tracking 78502 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-04 21:46:07 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:161,365,535
INFO 2026-06-04 21:46:07 MarkDuplicates Tracking 80502 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-04 21:46:09 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:169,124,949
INFO 2026-06-04 21:46:09 MarkDuplicates Tracking 87064 as yet unmatched pairs. 4851 records in RAM.
INFO 2026-06-04 21:46:11 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:173,964,944
INFO 2026-06-04 21:46:11 MarkDuplicates Tracking 84232 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-04 21:46:13 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:183,023,732
INFO 2026-06-04 21:46:13 MarkDuplicates Tracking 86394 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-04 21:46:16 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:186,344,386
INFO 2026-06-04 21:46:16 MarkDuplicates Tracking 88087 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-04 21:46:18 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:201,782,302
INFO 2026-06-04 21:46:18 MarkDuplicates Tracking 89671 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-04 21:46:19 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:203,851,096
INFO 2026-06-04 21:46:19 MarkDuplicates Tracking 92664 as yet unmatched pairs. 1326 records in RAM.
INFO 2026-06-04 21:46:21 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:207,752,169
INFO 2026-06-04 21:46:21 MarkDuplicates Tracking 95249 as yet unmatched pairs. 2140 records in RAM.
INFO 2026-06-04 21:46:22 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:214,383,956
INFO 2026-06-04 21:46:22 MarkDuplicates Tracking 95313 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-04 21:46:25 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:225,519,465
INFO 2026-06-04 21:46:25 MarkDuplicates Tracking 96734 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-04 21:46:27 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:228,272,169
INFO 2026-06-04 21:46:27 MarkDuplicates Tracking 100115 as yet unmatched pairs. 1473 records in RAM.
INFO 2026-06-04 21:46:28 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:231,537,299
INFO 2026-06-04 21:46:28 MarkDuplicates Tracking 101015 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-04 21:46:30 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:235,729,599
INFO 2026-06-04 21:46:30 MarkDuplicates Tracking 103200 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-04 21:46:32 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,768
INFO 2026-06-04 21:46:32 MarkDuplicates Tracking 104994 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-04 21:46:34 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:1,487,860
INFO 2026-06-04 21:46:34 MarkDuplicates Tracking 108088 as yet unmatched pairs. 107177 records in RAM.
INFO 2026-06-04 21:46:36 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:10,058,937
INFO 2026-06-04 21:46:36 MarkDuplicates Tracking 110715 as yet unmatched pairs. 109798 records in RAM.
INFO 2026-06-04 21:46:38 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,102
INFO 2026-06-04 21:46:38 MarkDuplicates Tracking 111966 as yet unmatched pairs. 111038 records in RAM.
INFO 2026-06-04 21:46:39 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:26,386,488
INFO 2026-06-04 21:46:39 MarkDuplicates Tracking 112409 as yet unmatched pairs. 111457 records in RAM.
INFO 2026-06-04 21:46:42 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:28,783,908
INFO 2026-06-04 21:46:42 MarkDuplicates Tracking 117620 as yet unmatched pairs. 116657 records in RAM.
INFO 2026-06-04 21:46:44 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,257
INFO 2026-06-04 21:46:44 MarkDuplicates Tracking 151734 as yet unmatched pairs. 113779 records in RAM.
INFO 2026-06-04 21:46:46 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:46:46 MarkDuplicates Tracking 739704 as yet unmatched pairs. 94182 records in RAM.
INFO 2026-06-04 21:46:47 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-04 21:46:47 MarkDuplicates Tracking 983776 as yet unmatched pairs. 85744 records in RAM.
INFO 2026-06-04 21:46:48 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:36,849,549
INFO 2026-06-04 21:46:48 MarkDuplicates Tracking 1032250 as yet unmatched pairs. 83807 records in RAM.
INFO 2026-06-04 21:46:51 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:43,224,505
INFO 2026-06-04 21:46:51 MarkDuplicates Tracking 1031196 as yet unmatched pairs. 82736 records in RAM.
INFO 2026-06-04 21:46:53 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:46,994,413
INFO 2026-06-04 21:46:53 MarkDuplicates Tracking 1028169 as yet unmatched pairs. 79691 records in RAM.
INFO 2026-06-04 21:46:54 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:54,647,175
INFO 2026-06-04 21:46:54 MarkDuplicates Tracking 1027730 as yet unmatched pairs. 79241 records in RAM.
INFO 2026-06-04 21:46:56 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:61,348,401
INFO 2026-06-04 21:46:56 MarkDuplicates Tracking 1024603 as yet unmatched pairs. 76090 records in RAM.
INFO 2026-06-04 21:46:57 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:69,895,093
INFO 2026-06-04 21:46:57 MarkDuplicates Tracking 1022885 as yet unmatched pairs. 74340 records in RAM.
INFO 2026-06-04 21:46:59 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:74,167,095
INFO 2026-06-04 21:46:59 MarkDuplicates Tracking 1021114 as yet unmatched pairs. 72563 records in RAM.
INFO 2026-06-04 21:47:01 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:85,324,956
INFO 2026-06-04 21:47:01 MarkDuplicates Tracking 1019444 as yet unmatched pairs. 70875 records in RAM.
INFO 2026-06-04 21:47:03 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:86,490,989
INFO 2026-06-04 21:47:03 MarkDuplicates Tracking 1017125 as yet unmatched pairs. 68547 records in RAM.
INFO 2026-06-04 21:47:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:96,298,241
INFO 2026-06-04 21:47:04 MarkDuplicates Tracking 1015954 as yet unmatched pairs. 67360 records in RAM.
INFO 2026-06-04 21:47:06 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:101,022,310
INFO 2026-06-04 21:47:06 MarkDuplicates Tracking 1013824 as yet unmatched pairs. 65205 records in RAM.
INFO 2026-06-04 21:47:08 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:108,751,628
INFO 2026-06-04 21:47:08 MarkDuplicates Tracking 1013194 as yet unmatched pairs. 64563 records in RAM.
INFO 2026-06-04 21:47:09 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,529
INFO 2026-06-04 21:47:09 MarkDuplicates Tracking 1011763 as yet unmatched pairs. 63124 records in RAM.
INFO 2026-06-04 21:47:10 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:112,389,290
INFO 2026-06-04 21:47:10 MarkDuplicates Tracking 1010785 as yet unmatched pairs. 62133 records in RAM.
INFO 2026-06-04 21:47:12 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:113,217,456
INFO 2026-06-04 21:47:12 MarkDuplicates Tracking 1033507 as yet unmatched pairs. 84837 records in RAM.
INFO 2026-06-04 21:47:13 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:113,218,043
INFO 2026-06-04 21:47:13 MarkDuplicates Tracking 1020359 as yet unmatched pairs. 71687 records in RAM.
INFO 2026-06-04 21:47:15 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:113,226,815
INFO 2026-06-04 21:47:15 MarkDuplicates Tracking 1019012 as yet unmatched pairs. 70339 records in RAM.
INFO 2026-06-04 21:47:17 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:113,242,016
INFO 2026-06-04 21:47:17 MarkDuplicates Tracking 1021440 as yet unmatched pairs. 72760 records in RAM.
INFO 2026-06-04 21:47:19 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:113,735,786
INFO 2026-06-04 21:47:19 MarkDuplicates Tracking 1002427 as yet unmatched pairs. 53731 records in RAM.
INFO 2026-06-04 21:47:21 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,519
INFO 2026-06-04 21:47:21 MarkDuplicates Tracking 1000851 as yet unmatched pairs. 52138 records in RAM.
INFO 2026-06-04 21:47:22 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:152,335,532
INFO 2026-06-04 21:47:22 MarkDuplicates Tracking 998379 as yet unmatched pairs. 49639 records in RAM.
INFO 2026-06-04 21:47:24 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:160,284,818
INFO 2026-06-04 21:47:24 MarkDuplicates Tracking 996490 as yet unmatched pairs. 47742 records in RAM.
INFO 2026-06-04 21:47:26 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:169,239,623
INFO 2026-06-04 21:47:26 MarkDuplicates Tracking 995116 as yet unmatched pairs. 46350 records in RAM.
INFO 2026-06-04 21:47:27 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:174,079,024
INFO 2026-06-04 21:47:27 MarkDuplicates Tracking 992775 as yet unmatched pairs. 43991 records in RAM.
INFO 2026-06-04 21:47:29 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:179,955,032
INFO 2026-06-04 21:47:29 MarkDuplicates Tracking 991081 as yet unmatched pairs. 42284 records in RAM.
INFO 2026-06-04 21:47:30 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:189,002,320
INFO 2026-06-04 21:47:30 MarkDuplicates Tracking 991039 as yet unmatched pairs. 42226 records in RAM.
INFO 2026-06-04 21:47:32 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:191,846,546
INFO 2026-06-04 21:47:32 MarkDuplicates Tracking 987697 as yet unmatched pairs. 38864 records in RAM.
INFO 2026-06-04 21:47:34 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:201,209,143
INFO 2026-06-04 21:47:34 MarkDuplicates Tracking 985460 as yet unmatched pairs. 36612 records in RAM.
INFO 2026-06-04 21:47:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:206,056,424
INFO 2026-06-04 21:47:35 MarkDuplicates Tracking 983869 as yet unmatched pairs. 35012 records in RAM.
INFO 2026-06-04 21:47:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,562
INFO 2026-06-04 21:47:37 MarkDuplicates Tracking 998057 as yet unmatched pairs. 49174 records in RAM.
INFO 2026-06-04 21:47:39 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,308
INFO 2026-06-04 21:47:39 MarkDuplicates Tracking 1007763 as yet unmatched pairs. 58879 records in RAM.
INFO 2026-06-04 21:47:41 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,284
INFO 2026-06-04 21:47:41 MarkDuplicates Tracking 992193 as yet unmatched pairs. 43304 records in RAM.
INFO 2026-06-04 21:47:43 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,706
INFO 2026-06-04 21:47:43 MarkDuplicates Tracking 992618 as yet unmatched pairs. 43728 records in RAM.
INFO 2026-06-04 21:47:44 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,795
INFO 2026-06-04 21:47:44 MarkDuplicates Tracking 993890 as yet unmatched pairs. 44991 records in RAM.
INFO 2026-06-04 21:47:46 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,774
INFO 2026-06-04 21:47:46 MarkDuplicates Tracking 982761 as yet unmatched pairs. 33855 records in RAM.
INFO 2026-06-04 21:47:47 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,631
INFO 2026-06-04 21:47:47 MarkDuplicates Tracking 978190 as yet unmatched pairs. 29262 records in RAM.
INFO 2026-06-04 21:47:50 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,404,587
INFO 2026-06-04 21:47:50 MarkDuplicates Tracking 988842 as yet unmatched pairs. 39914 records in RAM.
INFO 2026-06-04 21:47:51 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,322
INFO 2026-06-04 21:47:51 MarkDuplicates Tracking 985434 as yet unmatched pairs. 36494 records in RAM.
INFO 2026-06-04 21:47:53 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,247
INFO 2026-06-04 21:47:53 MarkDuplicates Tracking 980294 as yet unmatched pairs. 31348 records in RAM.
INFO 2026-06-04 21:47:55 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,158
INFO 2026-06-04 21:47:55 MarkDuplicates Tracking 975874 as yet unmatched pairs. 26924 records in RAM.
INFO 2026-06-04 21:47:56 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,717
INFO 2026-06-04 21:47:56 MarkDuplicates Tracking 973320 as yet unmatched pairs. 24362 records in RAM.
INFO 2026-06-04 21:47:58 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:217,804,521
INFO 2026-06-04 21:47:58 MarkDuplicates Tracking 961890 as yet unmatched pairs. 12922 records in RAM.
INFO 2026-06-04 21:48:00 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:218,747,664
INFO 2026-06-04 21:48:00 MarkDuplicates Tracking 959345 as yet unmatched pairs. 10372 records in RAM.
INFO 2026-06-04 21:48:02 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:219,570,571
INFO 2026-06-04 21:48:02 MarkDuplicates Tracking 957831 as yet unmatched pairs. 8845 records in RAM.
INFO 2026-06-04 21:48:03 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:229,815,175
INFO 2026-06-04 21:48:03 MarkDuplicates Tracking 955711 as yet unmatched pairs. 6705 records in RAM.
INFO 2026-06-04 21:48:05 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:233,170,155
INFO 2026-06-04 21:48:05 MarkDuplicates Tracking 953502 as yet unmatched pairs. 4480 records in RAM.
INFO 2026-06-04 21:48:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:238,439,233
INFO 2026-06-04 21:48:06 MarkDuplicates Tracking 951626 as yet unmatched pairs. 2572 records in RAM.
INFO 2026-06-04 21:48:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:241,498,340
INFO 2026-06-04 21:48:08 MarkDuplicates Tracking 949768 as yet unmatched pairs. 699 records in RAM.
INFO 2026-06-04 21:48:10 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:9,754,739
INFO 2026-06-04 21:48:10 MarkDuplicates Tracking 947708 as yet unmatched pairs. 51949 records in RAM.
INFO 2026-06-04 21:48:12 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:12,839,498
INFO 2026-06-04 21:48:12 MarkDuplicates Tracking 946842 as yet unmatched pairs. 51066 records in RAM.
INFO 2026-06-04 21:48:14 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:20,114,932
INFO 2026-06-04 21:48:14 MarkDuplicates Tracking 943885 as yet unmatched pairs. 48097 records in RAM.
INFO 2026-06-04 21:48:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:33,576,231
INFO 2026-06-04 21:48:15 MarkDuplicates Tracking 942106 as yet unmatched pairs. 46298 records in RAM.
INFO 2026-06-04 21:48:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:39,093,993
INFO 2026-06-04 21:48:17 MarkDuplicates Tracking 940281 as yet unmatched pairs. 44459 records in RAM.
INFO 2026-06-04 21:48:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:41,835,932
INFO 2026-06-04 21:48:19 MarkDuplicates Tracking 938403 as yet unmatched pairs. 42572 records in RAM.
INFO 2026-06-04 21:48:20 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:46,860,711
INFO 2026-06-04 21:48:20 MarkDuplicates Tracking 936352 as yet unmatched pairs. 40513 records in RAM.
INFO 2026-06-04 21:48:22 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:47,928,301
INFO 2026-06-04 21:48:22 MarkDuplicates Tracking 935274 as yet unmatched pairs. 39419 records in RAM.
INFO 2026-06-04 21:48:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:49,013,330
INFO 2026-06-04 21:48:24 MarkDuplicates Tracking 934700 as yet unmatched pairs. 38832 records in RAM.
INFO 2026-06-04 21:48:25 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:49,357,711
INFO 2026-06-04 21:48:25 MarkDuplicates Tracking 932653 as yet unmatched pairs. 36770 records in RAM.
INFO 2026-06-04 21:48:27 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:50,257,026
INFO 2026-06-04 21:48:27 MarkDuplicates Tracking 929031 as yet unmatched pairs. 33137 records in RAM.
INFO 2026-06-04 21:48:29 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:51,995,074
INFO 2026-06-04 21:48:29 MarkDuplicates Tracking 926718 as yet unmatched pairs. 30810 records in RAM.
INFO 2026-06-04 21:48:31 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:53,240,324
INFO 2026-06-04 21:48:31 MarkDuplicates Tracking 926233 as yet unmatched pairs. 30315 records in RAM.
INFO 2026-06-04 21:48:32 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:61,989,783
INFO 2026-06-04 21:48:32 MarkDuplicates Tracking 923353 as yet unmatched pairs. 27414 records in RAM.
INFO 2026-06-04 21:48:34 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:69,085,201
INFO 2026-06-04 21:48:34 MarkDuplicates Tracking 921779 as yet unmatched pairs. 25833 records in RAM.
INFO 2026-06-04 21:48:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:99,744,984
INFO 2026-06-04 21:48:36 MarkDuplicates Tracking 920644 as yet unmatched pairs. 24681 records in RAM.
INFO 2026-06-04 21:48:37 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:107,791,290
INFO 2026-06-04 21:48:37 MarkDuplicates Tracking 917775 as yet unmatched pairs. 21795 records in RAM.
INFO 2026-06-04 21:48:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 3s. Last read position: chr3:114,350,549
INFO 2026-06-04 21:48:40 MarkDuplicates Tracking 916658 as yet unmatched pairs. 20658 records in RAM.
INFO 2026-06-04 21:48:42 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:122,703,853
INFO 2026-06-04 21:48:42 MarkDuplicates Tracking 914686 as yet unmatched pairs. 18664 records in RAM.
INFO 2026-06-04 21:48:43 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:126,351,960
INFO 2026-06-04 21:48:43 MarkDuplicates Tracking 912490 as yet unmatched pairs. 16454 records in RAM.
INFO 2026-06-04 21:48:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:129,565,986
INFO 2026-06-04 21:48:45 MarkDuplicates Tracking 911175 as yet unmatched pairs. 15134 records in RAM.
INFO 2026-06-04 21:48:47 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:136,150,997
INFO 2026-06-04 21:48:47 MarkDuplicates Tracking 908893 as yet unmatched pairs. 12832 records in RAM.
INFO 2026-06-04 21:48:48 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:146,194,416
INFO 2026-06-04 21:48:48 MarkDuplicates Tracking 907129 as yet unmatched pairs. 11053 records in RAM.
INFO 2026-06-04 21:48:50 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:158,684,634
INFO 2026-06-04 21:48:50 MarkDuplicates Tracking 905160 as yet unmatched pairs. 9060 records in RAM.
INFO 2026-06-04 21:48:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:177,026,462
INFO 2026-06-04 21:48:52 MarkDuplicates Tracking 903715 as yet unmatched pairs. 7598 records in RAM.
INFO 2026-06-04 21:48:53 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:184,304,333
INFO 2026-06-04 21:48:53 MarkDuplicates Tracking 901801 as yet unmatched pairs. 5665 records in RAM.
INFO 2026-06-04 21:48:55 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:186,785,074
INFO 2026-06-04 21:48:55 MarkDuplicates Tracking 901644 as yet unmatched pairs. 5499 records in RAM.
INFO 2026-06-04 21:48:57 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr3:193,614,956
INFO 2026-06-04 21:48:57 MarkDuplicates Tracking 898248 as yet unmatched pairs. 2085 records in RAM.
INFO 2026-06-04 21:49:00 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:197,296,360
INFO 2026-06-04 21:49:00 MarkDuplicates Tracking 897551 as yet unmatched pairs. 1361 records in RAM.
INFO 2026-06-04 21:49:02 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:1,655,661
INFO 2026-06-04 21:49:02 MarkDuplicates Tracking 894572 as yet unmatched pairs. 32447 records in RAM.
INFO 2026-06-04 21:49:03 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:3,180,629
INFO 2026-06-04 21:49:03 MarkDuplicates Tracking 892735 as yet unmatched pairs. 30592 records in RAM.
INFO 2026-06-04 21:49:05 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:9,221,623
INFO 2026-06-04 21:49:05 MarkDuplicates Tracking 890517 as yet unmatched pairs. 28364 records in RAM.
INFO 2026-06-04 21:49:06 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:23,831,668
INFO 2026-06-04 21:49:06 MarkDuplicates Tracking 889243 as yet unmatched pairs. 27068 records in RAM.
INFO 2026-06-04 21:49:08 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr4:25,674,339
INFO 2026-06-04 21:49:08 MarkDuplicates Tracking 890031 as yet unmatched pairs. 27851 records in RAM.
INFO 2026-06-04 21:49:10 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:38,697,115
INFO 2026-06-04 21:49:10 MarkDuplicates Tracking 885716 as yet unmatched pairs. 23522 records in RAM.
INFO 2026-06-04 21:49:11 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:42,579,857
INFO 2026-06-04 21:49:11 MarkDuplicates Tracking 884863 as yet unmatched pairs. 22656 records in RAM.
INFO 2026-06-04 21:49:13 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:57,025,444
INFO 2026-06-04 21:49:13 MarkDuplicates Tracking 881881 as yet unmatched pairs. 19658 records in RAM.
INFO 2026-06-04 21:49:16 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr4:75,752,552
INFO 2026-06-04 21:49:16 MarkDuplicates Tracking 880188 as yet unmatched pairs. 17954 records in RAM.
INFO 2026-06-04 21:49:18 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:82,631,360
INFO 2026-06-04 21:49:18 MarkDuplicates Tracking 878617 as yet unmatched pairs. 16365 records in RAM.
INFO 2026-06-04 21:49:19 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:86,785,902
INFO 2026-06-04 21:49:19 MarkDuplicates Tracking 877281 as yet unmatched pairs. 15011 records in RAM.
INFO 2026-06-04 21:49:21 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:94,618,023
INFO 2026-06-04 21:49:21 MarkDuplicates Tracking 874962 as yet unmatched pairs. 12675 records in RAM.
INFO 2026-06-04 21:49:22 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:105,958,476
INFO 2026-06-04 21:49:22 MarkDuplicates Tracking 875281 as yet unmatched pairs. 12981 records in RAM.
INFO 2026-06-04 21:49:24 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:119,627,120
INFO 2026-06-04 21:49:24 MarkDuplicates Tracking 871842 as yet unmatched pairs. 9530 records in RAM.
INFO 2026-06-04 21:49:25 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:134,200,878
INFO 2026-06-04 21:49:25 MarkDuplicates Tracking 869664 as yet unmatched pairs. 7345 records in RAM.
INFO 2026-06-04 21:49:27 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:150,828,422
INFO 2026-06-04 21:49:27 MarkDuplicates Tracking 868286 as yet unmatched pairs. 5945 records in RAM.
INFO 2026-06-04 21:49:28 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:158,706,748
INFO 2026-06-04 21:49:28 MarkDuplicates Tracking 866263 as yet unmatched pairs. 3916 records in RAM.
INFO 2026-06-04 21:49:30 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:182,914,943
INFO 2026-06-04 21:49:30 MarkDuplicates Tracking 865244 as yet unmatched pairs. 2878 records in RAM.
INFO 2026-06-04 21:49:33 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr4:186,636,848
INFO 2026-06-04 21:49:33 MarkDuplicates Tracking 862569 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-04 21:49:34 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:14,291,096
INFO 2026-06-04 21:49:34 MarkDuplicates Tracking 861326 as yet unmatched pairs. 45235 records in RAM.
INFO 2026-06-04 21:49:36 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:34,823,560
INFO 2026-06-04 21:49:36 MarkDuplicates Tracking 858971 as yet unmatched pairs. 42867 records in RAM.
INFO 2026-06-04 21:49:38 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr5:43,656,729
INFO 2026-06-04 21:49:38 MarkDuplicates Tracking 857462 as yet unmatched pairs. 41340 records in RAM.
INFO 2026-06-04 21:49:40 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:57,247,136
INFO 2026-06-04 21:49:40 MarkDuplicates Tracking 855578 as yet unmatched pairs. 39446 records in RAM.
INFO 2026-06-04 21:49:41 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:70,202,023
INFO 2026-06-04 21:49:41 MarkDuplicates Tracking 853841 as yet unmatched pairs. 37696 records in RAM.
INFO 2026-06-04 21:49:43 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:75,389,639
INFO 2026-06-04 21:49:43 MarkDuplicates Tracking 852828 as yet unmatched pairs. 36665 records in RAM.
INFO 2026-06-04 21:49:44 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:79,316,158
INFO 2026-06-04 21:49:44 MarkDuplicates Tracking 850533 as yet unmatched pairs. 34343 records in RAM.
INFO 2026-06-04 21:49:46 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:91,373,800
INFO 2026-06-04 21:49:46 MarkDuplicates Tracking 849580 as yet unmatched pairs. 33378 records in RAM.
INFO 2026-06-04 21:49:47 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:103,028,975
INFO 2026-06-04 21:49:47 MarkDuplicates Tracking 847912 as yet unmatched pairs. 31699 records in RAM.
INFO 2026-06-04 21:49:49 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:122,799,734
INFO 2026-06-04 21:49:49 MarkDuplicates Tracking 845927 as yet unmatched pairs. 29688 records in RAM.
INFO 2026-06-04 21:49:51 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:132,927,191
INFO 2026-06-04 21:49:51 MarkDuplicates Tracking 844382 as yet unmatched pairs. 28128 records in RAM.
INFO 2026-06-04 21:49:52 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:138,386,368
INFO 2026-06-04 21:49:52 MarkDuplicates Tracking 842186 as yet unmatched pairs. 25920 records in RAM.
INFO 2026-06-04 21:49:54 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:138,468,011
INFO 2026-06-04 21:49:54 MarkDuplicates Tracking 840917 as yet unmatched pairs. 24635 records in RAM.
INFO 2026-06-04 21:49:56 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:140,567,661
INFO 2026-06-04 21:49:56 MarkDuplicates Tracking 838459 as yet unmatched pairs. 22119 records in RAM.
INFO 2026-06-04 21:49:58 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr5:141,431,808
INFO 2026-06-04 21:49:58 MarkDuplicates Tracking 837102 as yet unmatched pairs. 20757 records in RAM.
INFO 2026-06-04 21:50:00 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:146,271,482
INFO 2026-06-04 21:50:00 MarkDuplicates Tracking 834838 as yet unmatched pairs. 18478 records in RAM.
INFO 2026-06-04 21:50:01 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,357,771
INFO 2026-06-04 21:50:01 MarkDuplicates Tracking 832880 as yet unmatched pairs. 16506 records in RAM.
INFO 2026-06-04 21:50:03 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,542,882
INFO 2026-06-04 21:50:03 MarkDuplicates Tracking 830797 as yet unmatched pairs. 14411 records in RAM.
INFO 2026-06-04 21:50:04 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:151,117,148
INFO 2026-06-04 21:50:04 MarkDuplicates Tracking 829328 as yet unmatched pairs. 12930 records in RAM.
INFO 2026-06-04 21:50:06 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:160,049,531
INFO 2026-06-04 21:50:06 MarkDuplicates Tracking 827047 as yet unmatched pairs. 10641 records in RAM.
INFO 2026-06-04 21:50:08 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,734
INFO 2026-06-04 21:50:08 MarkDuplicates Tracking 829537 as yet unmatched pairs. 13122 records in RAM.
INFO 2026-06-04 21:50:09 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:173,108,638
INFO 2026-06-04 21:50:09 MarkDuplicates Tracking 823814 as yet unmatched pairs. 7383 records in RAM.
INFO 2026-06-04 21:50:11 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:177,626,475
INFO 2026-06-04 21:50:11 MarkDuplicates Tracking 821620 as yet unmatched pairs. 5177 records in RAM.
INFO 2026-06-04 21:50:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr5:179,798,545
INFO 2026-06-04 21:50:13 MarkDuplicates Tracking 820058 as yet unmatched pairs. 3605 records in RAM.
INFO 2026-06-04 21:50:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:179,893,304
INFO 2026-06-04 21:50:15 MarkDuplicates Tracking 818289 as yet unmatched pairs. 1833 records in RAM.
INFO 2026-06-04 21:50:17 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:3,264,159
INFO 2026-06-04 21:50:17 MarkDuplicates Tracking 815915 as yet unmatched pairs. 53359 records in RAM.
INFO 2026-06-04 21:50:18 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:7,580,326
INFO 2026-06-04 21:50:18 MarkDuplicates Tracking 814498 as yet unmatched pairs. 51925 records in RAM.
INFO 2026-06-04 21:50:20 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:17,771,117
INFO 2026-06-04 21:50:20 MarkDuplicates Tracking 812346 as yet unmatched pairs. 49760 records in RAM.
INFO 2026-06-04 21:50:21 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,943
INFO 2026-06-04 21:50:21 MarkDuplicates Tracking 810270 as yet unmatched pairs. 47669 records in RAM.
INFO 2026-06-04 21:50:23 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:30,491,637
INFO 2026-06-04 21:50:23 MarkDuplicates Tracking 809594 as yet unmatched pairs. 46981 records in RAM.
INFO 2026-06-04 21:50:25 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:30,914,833
INFO 2026-06-04 21:50:25 MarkDuplicates Tracking 806706 as yet unmatched pairs. 44088 records in RAM.
INFO 2026-06-04 21:50:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr6:31,637,066
INFO 2026-06-04 21:50:27 MarkDuplicates Tracking 806021 as yet unmatched pairs. 43399 records in RAM.
INFO 2026-06-04 21:50:29 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:31,860,075
INFO 2026-06-04 21:50:29 MarkDuplicates Tracking 803804 as yet unmatched pairs. 41176 records in RAM.
INFO 2026-06-04 21:50:30 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:32,001,789
INFO 2026-06-04 21:50:30 MarkDuplicates Tracking 806342 as yet unmatched pairs. 43708 records in RAM.
INFO 2026-06-04 21:50:32 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:32,055,860
INFO 2026-06-04 21:50:32 MarkDuplicates Tracking 801217 as yet unmatched pairs. 38583 records in RAM.
INFO 2026-06-04 21:50:33 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:32,976,366
INFO 2026-06-04 21:50:33 MarkDuplicates Tracking 799470 as yet unmatched pairs. 36824 records in RAM.
INFO 2026-06-04 21:50:35 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:33,413,478
INFO 2026-06-04 21:50:35 MarkDuplicates Tracking 799039 as yet unmatched pairs. 36384 records in RAM.
INFO 2026-06-04 21:50:37 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:34,858,306
INFO 2026-06-04 21:50:37 MarkDuplicates Tracking 795074 as yet unmatched pairs. 32406 records in RAM.
INFO 2026-06-04 21:50:38 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:37,022,292
INFO 2026-06-04 21:50:38 MarkDuplicates Tracking 793118 as yet unmatched pairs. 30433 records in RAM.
INFO 2026-06-04 21:50:40 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:43,006,482
INFO 2026-06-04 21:50:40 MarkDuplicates Tracking 791315 as yet unmatched pairs. 28614 records in RAM.
INFO 2026-06-04 21:50:41 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:43,771,140
INFO 2026-06-04 21:50:41 MarkDuplicates Tracking 794311 as yet unmatched pairs. 31594 records in RAM.
INFO 2026-06-04 21:50:43 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:46,863,034
INFO 2026-06-04 21:50:43 MarkDuplicates Tracking 788085 as yet unmatched pairs. 25362 records in RAM.
INFO 2026-06-04 21:50:45 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:63,646,730
INFO 2026-06-04 21:50:45 MarkDuplicates Tracking 785895 as yet unmatched pairs. 23092 records in RAM.
INFO 2026-06-04 21:50:46 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:79,631,328
INFO 2026-06-04 21:50:46 MarkDuplicates Tracking 784856 as yet unmatched pairs. 22041 records in RAM.
INFO 2026-06-04 21:50:49 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr6:89,707,446
INFO 2026-06-04 21:50:49 MarkDuplicates Tracking 782066 as yet unmatched pairs. 19240 records in RAM.
INFO 2026-06-04 21:50:50 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:107,040,201
INFO 2026-06-04 21:50:50 MarkDuplicates Tracking 780290 as yet unmatched pairs. 17449 records in RAM.
INFO 2026-06-04 21:50:52 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:116,253,156
INFO 2026-06-04 21:50:52 MarkDuplicates Tracking 778670 as yet unmatched pairs. 15812 records in RAM.
INFO 2026-06-04 21:50:53 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:129,369,923
INFO 2026-06-04 21:50:53 MarkDuplicates Tracking 776660 as yet unmatched pairs. 13787 records in RAM.
INFO 2026-06-04 21:50:55 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:136,613,220
INFO 2026-06-04 21:50:55 MarkDuplicates Tracking 775064 as yet unmatched pairs. 12164 records in RAM.
INFO 2026-06-04 21:50:57 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:144,482,375
INFO 2026-06-04 21:50:57 MarkDuplicates Tracking 773766 as yet unmatched pairs. 10851 records in RAM.
INFO 2026-06-04 21:50:58 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:150,394,230
INFO 2026-06-04 21:50:58 MarkDuplicates Tracking 774055 as yet unmatched pairs. 11118 records in RAM.
INFO 2026-06-04 21:51:00 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:156,778,093
INFO 2026-06-04 21:51:00 MarkDuplicates Tracking 769552 as yet unmatched pairs. 6604 records in RAM.
INFO 2026-06-04 21:51:02 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr6:158,783,539
INFO 2026-06-04 21:51:02 MarkDuplicates Tracking 771366 as yet unmatched pairs. 8415 records in RAM.
INFO 2026-06-04 21:51:03 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:160,058,101
INFO 2026-06-04 21:51:03 MarkDuplicates Tracking 765641 as yet unmatched pairs. 2679 records in RAM.
INFO 2026-06-04 21:51:05 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:168,653,150
INFO 2026-06-04 21:51:05 MarkDuplicates Tracking 763739 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-04 21:51:07 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:2,542,152
INFO 2026-06-04 21:51:07 MarkDuplicates Tracking 761770 as yet unmatched pairs. 48827 records in RAM.
INFO 2026-06-04 21:51:09 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:5,390,545
INFO 2026-06-04 21:51:09 MarkDuplicates Tracking 760542 as yet unmatched pairs. 47589 records in RAM.
INFO 2026-06-04 21:51:10 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:6,046,069
INFO 2026-06-04 21:51:10 MarkDuplicates Tracking 757781 as yet unmatched pairs. 44818 records in RAM.
INFO 2026-06-04 21:51:12 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:18,240,732
INFO 2026-06-04 21:51:12 MarkDuplicates Tracking 755702 as yet unmatched pairs. 42715 records in RAM.
INFO 2026-06-04 21:51:13 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:29,120,944
INFO 2026-06-04 21:51:13 MarkDuplicates Tracking 754317 as yet unmatched pairs. 41320 records in RAM.
INFO 2026-06-04 21:51:15 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:41,964,592
INFO 2026-06-04 21:51:15 MarkDuplicates Tracking 752075 as yet unmatched pairs. 39061 records in RAM.
INFO 2026-06-04 21:51:18 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 3s. Last read position: chr7:44,760,116
INFO 2026-06-04 21:51:18 MarkDuplicates Tracking 750516 as yet unmatched pairs. 37495 records in RAM.
INFO 2026-06-04 21:51:20 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr7:55,198,742
INFO 2026-06-04 21:51:20 MarkDuplicates Tracking 749863 as yet unmatched pairs. 36825 records in RAM.
INFO 2026-06-04 21:51:22 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:71,335,670
INFO 2026-06-04 21:51:22 MarkDuplicates Tracking 746931 as yet unmatched pairs. 33864 records in RAM.
INFO 2026-06-04 21:51:23 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,774
INFO 2026-06-04 21:51:23 MarkDuplicates Tracking 746355 as yet unmatched pairs. 33283 records in RAM.
INFO 2026-06-04 21:51:25 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:75,196,645
INFO 2026-06-04 21:51:25 MarkDuplicates Tracking 746667 as yet unmatched pairs. 33577 records in RAM.
INFO 2026-06-04 21:51:26 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:76,063,518
INFO 2026-06-04 21:51:26 MarkDuplicates Tracking 742820 as yet unmatched pairs. 29719 records in RAM.
INFO 2026-06-04 21:51:28 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:82,916,457
INFO 2026-06-04 21:51:28 MarkDuplicates Tracking 740866 as yet unmatched pairs. 27759 records in RAM.
INFO 2026-06-04 21:51:30 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr7:92,097,203
INFO 2026-06-04 21:51:30 MarkDuplicates Tracking 739364 as yet unmatched pairs. 26245 records in RAM.
INFO 2026-06-04 21:51:32 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr7:95,225,975
INFO 2026-06-04 21:51:32 MarkDuplicates Tracking 737316 as yet unmatched pairs. 24193 records in RAM.
INFO 2026-06-04 21:51:34 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:99,621,426
INFO 2026-06-04 21:51:34 MarkDuplicates Tracking 735292 as yet unmatched pairs. 22151 records in RAM.
INFO 2026-06-04 21:51:36 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:100,683,336
INFO 2026-06-04 21:51:36 MarkDuplicates Tracking 733426 as yet unmatched pairs. 20270 records in RAM.
INFO 2026-06-04 21:51:37 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:102,503,185
INFO 2026-06-04 21:51:37 MarkDuplicates Tracking 731750 as yet unmatched pairs. 18581 records in RAM.
INFO 2026-06-04 21:51:39 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:107,189,341
INFO 2026-06-04 21:51:39 MarkDuplicates Tracking 730711 as yet unmatched pairs. 17529 records in RAM.
INFO 2026-06-04 21:51:40 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:116,558,987
INFO 2026-06-04 21:51:40 MarkDuplicates Tracking 728883 as yet unmatched pairs. 15683 records in RAM.
INFO 2026-06-04 21:51:42 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:116,771,604
INFO 2026-06-04 21:51:42 MarkDuplicates Tracking 727878 as yet unmatched pairs. 14671 records in RAM.
INFO 2026-06-04 21:51:43 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:127,704,945
INFO 2026-06-04 21:51:43 MarkDuplicates Tracking 726771 as yet unmatched pairs. 13560 records in RAM.
INFO 2026-06-04 21:51:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr7:132,785,646
INFO 2026-06-04 21:51:46 MarkDuplicates Tracking 723173 as yet unmatched pairs. 9952 records in RAM.
INFO 2026-06-04 21:51:47 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:138,554,823
INFO 2026-06-04 21:51:47 MarkDuplicates Tracking 722031 as yet unmatched pairs. 8797 records in RAM.
INFO 2026-06-04 21:51:49 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:140,850,163
INFO 2026-06-04 21:51:49 MarkDuplicates Tracking 719837 as yet unmatched pairs. 6592 records in RAM.
INFO 2026-06-04 21:51:51 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:144,286,027
INFO 2026-06-04 21:51:51 MarkDuplicates Tracking 718286 as yet unmatched pairs. 5032 records in RAM.
INFO 2026-06-04 21:51:52 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:150,627,777
INFO 2026-06-04 21:51:52 MarkDuplicates Tracking 716477 as yet unmatched pairs. 3204 records in RAM.
INFO 2026-06-04 21:51:54 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:152,181,359
INFO 2026-06-04 21:51:54 MarkDuplicates Tracking 714685 as yet unmatched pairs. 1407 records in RAM.
INFO 2026-06-04 21:51:56 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr8:7,977,659
INFO 2026-06-04 21:51:56 MarkDuplicates Tracking 712696 as yet unmatched pairs. 90556 records in RAM.
INFO 2026-06-04 21:51:58 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,664
INFO 2026-06-04 21:51:58 MarkDuplicates Tracking 744381 as yet unmatched pairs. 122231 records in RAM.
INFO 2026-06-04 21:51:59 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:12,430,410
INFO 2026-06-04 21:51:59 MarkDuplicates Tracking 708978 as yet unmatched pairs. 86826 records in RAM.
INFO 2026-06-04 21:52:01 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:18,872,484
INFO 2026-06-04 21:52:01 MarkDuplicates Tracking 707754 as yet unmatched pairs. 85596 records in RAM.
INFO 2026-06-04 21:52:03 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:22,644,665
INFO 2026-06-04 21:52:03 MarkDuplicates Tracking 705030 as yet unmatched pairs. 82860 records in RAM.
INFO 2026-06-04 21:52:05 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr8:27,604,291
INFO 2026-06-04 21:52:05 MarkDuplicates Tracking 708537 as yet unmatched pairs. 86363 records in RAM.
INFO 2026-06-04 21:52:07 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr8:28,731,281
INFO 2026-06-04 21:52:07 MarkDuplicates Tracking 701482 as yet unmatched pairs. 79294 records in RAM.
INFO 2026-06-04 21:52:09 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:38,133,434
INFO 2026-06-04 21:52:09 MarkDuplicates Tracking 699312 as yet unmatched pairs. 77114 records in RAM.
INFO 2026-06-04 21:52:11 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,534
INFO 2026-06-04 21:52:11 MarkDuplicates Tracking 698154 as yet unmatched pairs. 75950 records in RAM.
INFO 2026-06-04 21:52:12 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr8:47,943,869
INFO 2026-06-04 21:52:12 MarkDuplicates Tracking 696000 as yet unmatched pairs. 73789 records in RAM.
INFO 2026-06-04 21:52:14 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr8:67,218,005
INFO 2026-06-04 21:52:14 MarkDuplicates Tracking 694038 as yet unmatched pairs. 71816 records in RAM.
INFO 2026-06-04 21:52:15 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr8:80,643,110
INFO 2026-06-04 21:52:15 MarkDuplicates Tracking 692401 as yet unmatched pairs. 70175 records in RAM.
INFO 2026-06-04 21:52:17 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr8:96,494,204
INFO 2026-06-04 21:52:17 MarkDuplicates Tracking 691591 as yet unmatched pairs. 69357 records in RAM.
INFO 2026-06-04 21:52:19 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,439
INFO 2026-06-04 21:52:19 MarkDuplicates Tracking 690669 as yet unmatched pairs. 68431 records in RAM.
INFO 2026-06-04 21:52:21 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr8:109,454,749
INFO 2026-06-04 21:52:21 MarkDuplicates Tracking 687776 as yet unmatched pairs. 65512 records in RAM.
INFO 2026-06-04 21:52:23 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr8:122,951,776
INFO 2026-06-04 21:52:23 MarkDuplicates Tracking 685290 as yet unmatched pairs. 63015 records in RAM.
INFO 2026-06-04 21:52:24 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr8:132,866,973
INFO 2026-06-04 21:52:24 MarkDuplicates Tracking 706826 as yet unmatched pairs. 84521 records in RAM.
INFO 2026-06-04 21:52:26 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr8:132,869,748
INFO 2026-06-04 21:52:26 MarkDuplicates Tracking 725199 as yet unmatched pairs. 102888 records in RAM.
INFO 2026-06-04 21:52:27 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr8:132,873,085
INFO 2026-06-04 21:52:27 MarkDuplicates Tracking 694977 as yet unmatched pairs. 72658 records in RAM.
INFO 2026-06-04 21:52:29 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:132,882,513
INFO 2026-06-04 21:52:29 MarkDuplicates Tracking 697328 as yet unmatched pairs. 75007 records in RAM.
INFO 2026-06-04 21:52:31 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr8:132,882,962
INFO 2026-06-04 21:52:31 MarkDuplicates Tracking 730625 as yet unmatched pairs. 108299 records in RAM.
INFO 2026-06-04 21:52:32 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr8:132,886,651
INFO 2026-06-04 21:52:32 MarkDuplicates Tracking 692756 as yet unmatched pairs. 70419 records in RAM.
INFO 2026-06-04 21:52:34 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr8:132,886,983
INFO 2026-06-04 21:52:34 MarkDuplicates Tracking 701173 as yet unmatched pairs. 78833 records in RAM.
INFO 2026-06-04 21:52:35 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr8:132,887,400
INFO 2026-06-04 21:52:35 MarkDuplicates Tracking 732985 as yet unmatched pairs. 110635 records in RAM.
INFO 2026-06-04 21:52:37 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:132,888,101
INFO 2026-06-04 21:52:37 MarkDuplicates Tracking 716890 as yet unmatched pairs. 94534 records in RAM.
INFO 2026-06-04 21:52:39 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:132,888,333
INFO 2026-06-04 21:52:39 MarkDuplicates Tracking 682270 as yet unmatched pairs. 59909 records in RAM.
INFO 2026-06-04 21:52:40 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:132,893,790
INFO 2026-06-04 21:52:40 MarkDuplicates Tracking 719150 as yet unmatched pairs. 96783 records in RAM.
INFO 2026-06-04 21:52:43 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr8:132,897,747
INFO 2026-06-04 21:52:43 MarkDuplicates Tracking 706959 as yet unmatched pairs. 84583 records in RAM.
INFO 2026-06-04 21:52:44 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr8:132,898,893
INFO 2026-06-04 21:52:44 MarkDuplicates Tracking 706496 as yet unmatched pairs. 84113 records in RAM.
INFO 2026-06-04 21:52:46 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:132,901,440
INFO 2026-06-04 21:52:46 MarkDuplicates Tracking 692626 as yet unmatched pairs. 70228 records in RAM.
INFO 2026-06-04 21:52:48 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:132,906,768
INFO 2026-06-04 21:52:48 MarkDuplicates Tracking 748267 as yet unmatched pairs. 125864 records in RAM.
INFO 2026-06-04 21:52:49 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:132,911,444
INFO 2026-06-04 21:52:49 MarkDuplicates Tracking 676343 as yet unmatched pairs. 53932 records in RAM.
INFO 2026-06-04 21:52:51 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:132,923,365
INFO 2026-06-04 21:52:51 MarkDuplicates Tracking 674957 as yet unmatched pairs. 52542 records in RAM.
INFO 2026-06-04 21:52:53 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:132,935,754
INFO 2026-06-04 21:52:53 MarkDuplicates Tracking 668871 as yet unmatched pairs. 46449 records in RAM.
INFO 2026-06-04 21:52:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:132,948,867
INFO 2026-06-04 21:52:54 MarkDuplicates Tracking 682723 as yet unmatched pairs. 60294 records in RAM.
INFO 2026-06-04 21:52:57 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr8:132,967,827
INFO 2026-06-04 21:52:57 MarkDuplicates Tracking 679489 as yet unmatched pairs. 57055 records in RAM.
INFO 2026-06-04 21:52:59 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr8:132,972,644
INFO 2026-06-04 21:52:59 MarkDuplicates Tracking 676621 as yet unmatched pairs. 54176 records in RAM.
INFO 2026-06-04 21:53:00 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:133,012,023
INFO 2026-06-04 21:53:00 MarkDuplicates Tracking 694450 as yet unmatched pairs. 71991 records in RAM.
INFO 2026-06-04 21:53:02 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr8:133,017,972
INFO 2026-06-04 21:53:02 MarkDuplicates Tracking 659341 as yet unmatched pairs. 36874 records in RAM.
INFO 2026-06-04 21:53:04 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:133,029,852
INFO 2026-06-04 21:53:04 MarkDuplicates Tracking 690337 as yet unmatched pairs. 67865 records in RAM.
INFO 2026-06-04 21:53:05 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:133,095,057
INFO 2026-06-04 21:53:05 MarkDuplicates Tracking 651636 as yet unmatched pairs. 29158 records in RAM.
INFO 2026-06-04 21:53:07 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:133,113,487
INFO 2026-06-04 21:53:07 MarkDuplicates Tracking 656887 as yet unmatched pairs. 34407 records in RAM.
INFO 2026-06-04 21:53:09 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr8:133,133,498
INFO 2026-06-04 21:53:09 MarkDuplicates Tracking 652844 as yet unmatched pairs. 30361 records in RAM.
INFO 2026-06-04 21:53:11 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:133,238,966
INFO 2026-06-04 21:53:11 MarkDuplicates Tracking 631552 as yet unmatched pairs. 9065 records in RAM.
INFO 2026-06-04 21:53:13 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,581,067
INFO 2026-06-04 21:53:13 MarkDuplicates Tracking 632975 as yet unmatched pairs. 10466 records in RAM.
INFO 2026-06-04 21:53:14 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,338
INFO 2026-06-04 21:53:14 MarkDuplicates Tracking 628399 as yet unmatched pairs. 5886 records in RAM.
INFO 2026-06-04 21:53:16 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:144,084,504
INFO 2026-06-04 21:53:16 MarkDuplicates Tracking 626009 as yet unmatched pairs. 3491 records in RAM.
INFO 2026-06-04 21:53:17 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:144,523,151
INFO 2026-06-04 21:53:17 MarkDuplicates Tracking 623304 as yet unmatched pairs. 764 records in RAM.
INFO 2026-06-04 21:53:19 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr9:5,763,209
INFO 2026-06-04 21:53:19 MarkDuplicates Tracking 621448 as yet unmatched pairs. 43724 records in RAM.
INFO 2026-06-04 21:53:20 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:19,290,789
INFO 2026-06-04 21:53:20 MarkDuplicates Tracking 620159 as yet unmatched pairs. 42406 records in RAM.
INFO 2026-06-04 21:53:22 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:33,948,553
INFO 2026-06-04 21:53:22 MarkDuplicates Tracking 617920 as yet unmatched pairs. 40155 records in RAM.
INFO 2026-06-04 21:53:24 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:35,717,686
INFO 2026-06-04 21:53:24 MarkDuplicates Tracking 616354 as yet unmatched pairs. 38586 records in RAM.
INFO 2026-06-04 21:53:26 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr9:69,046,385
INFO 2026-06-04 21:53:26 MarkDuplicates Tracking 614375 as yet unmatched pairs. 36589 records in RAM.
INFO 2026-06-04 21:53:28 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:77,177,723
INFO 2026-06-04 21:53:28 MarkDuplicates Tracking 612579 as yet unmatched pairs. 34784 records in RAM.
INFO 2026-06-04 21:53:29 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:84,670,893
INFO 2026-06-04 21:53:29 MarkDuplicates Tracking 617629 as yet unmatched pairs. 39820 records in RAM.
INFO 2026-06-04 21:53:31 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:84,811,993
INFO 2026-06-04 21:53:31 MarkDuplicates Tracking 613920 as yet unmatched pairs. 36108 records in RAM.
INFO 2026-06-04 21:53:32 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:85,633,254
INFO 2026-06-04 21:53:32 MarkDuplicates Tracking 606856 as yet unmatched pairs. 29038 records in RAM.
INFO 2026-06-04 21:53:34 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:93,676,671
INFO 2026-06-04 21:53:34 MarkDuplicates Tracking 605558 as yet unmatched pairs. 27739 records in RAM.
INFO 2026-06-04 21:53:36 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr9:99,149,182
INFO 2026-06-04 21:53:36 MarkDuplicates Tracking 603149 as yet unmatched pairs. 25318 records in RAM.
INFO 2026-06-04 21:53:37 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:108,943,998
INFO 2026-06-04 21:53:37 MarkDuplicates Tracking 602150 as yet unmatched pairs. 24316 records in RAM.
INFO 2026-06-04 21:53:40 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr9:114,169,052
INFO 2026-06-04 21:53:40 MarkDuplicates Tracking 599403 as yet unmatched pairs. 21564 records in RAM.
INFO 2026-06-04 21:53:43 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr9:121,312,346
INFO 2026-06-04 21:53:43 MarkDuplicates Tracking 598108 as yet unmatched pairs. 20262 records in RAM.
INFO 2026-06-04 21:53:45 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr9:124,881,255
INFO 2026-06-04 21:53:45 MarkDuplicates Tracking 595459 as yet unmatched pairs. 17605 records in RAM.
INFO 2026-06-04 21:53:46 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:127,786,741
INFO 2026-06-04 21:53:46 MarkDuplicates Tracking 593656 as yet unmatched pairs. 15795 records in RAM.
INFO 2026-06-04 21:53:48 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:128,322,849
INFO 2026-06-04 21:53:48 MarkDuplicates Tracking 591492 as yet unmatched pairs. 13629 records in RAM.
INFO 2026-06-04 21:53:49 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:129,022,353
INFO 2026-06-04 21:53:49 MarkDuplicates Tracking 590019 as yet unmatched pairs. 12155 records in RAM.
INFO 2026-06-04 21:53:51 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:130,885,239
INFO 2026-06-04 21:53:51 MarkDuplicates Tracking 588504 as yet unmatched pairs. 10628 records in RAM.
INFO 2026-06-04 21:53:53 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:132,648,194
INFO 2026-06-04 21:53:53 MarkDuplicates Tracking 585854 as yet unmatched pairs. 7972 records in RAM.
INFO 2026-06-04 21:53:56 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr9:134,728,732
INFO 2026-06-04 21:53:56 MarkDuplicates Tracking 584093 as yet unmatched pairs. 6190 records in RAM.
INFO 2026-06-04 21:53:57 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:136,519,543
INFO 2026-06-04 21:53:57 MarkDuplicates Tracking 582112 as yet unmatched pairs. 4201 records in RAM.
INFO 2026-06-04 21:53:59 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:137,039,974
INFO 2026-06-04 21:53:59 MarkDuplicates Tracking 581248 as yet unmatched pairs. 3332 records in RAM.
INFO 2026-06-04 21:54:01 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:349,434
INFO 2026-06-04 21:54:01 MarkDuplicates Tracking 577829 as yet unmatched pairs. 34920 records in RAM.
INFO 2026-06-04 21:54:02 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:12,028,874
INFO 2026-06-04 21:54:02 MarkDuplicates Tracking 576070 as yet unmatched pairs. 33157 records in RAM.
INFO 2026-06-04 21:54:04 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:17,235,844
INFO 2026-06-04 21:54:04 MarkDuplicates Tracking 577524 as yet unmatched pairs. 34600 records in RAM.
INFO 2026-06-04 21:54:05 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr10:26,021,636
INFO 2026-06-04 21:54:05 MarkDuplicates Tracking 572067 as yet unmatched pairs. 29126 records in RAM.
INFO 2026-06-04 21:54:07 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:32,018,140
INFO 2026-06-04 21:54:07 MarkDuplicates Tracking 572469 as yet unmatched pairs. 29515 records in RAM.
INFO 2026-06-04 21:54:08 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr10:38,369,957
INFO 2026-06-04 21:54:08 MarkDuplicates Tracking 568667 as yet unmatched pairs. 25698 records in RAM.
INFO 2026-06-04 21:54:10 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:47,523,439
INFO 2026-06-04 21:54:10 MarkDuplicates Tracking 567342 as yet unmatched pairs. 24360 records in RAM.
INFO 2026-06-04 21:54:11 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:60,181,276
INFO 2026-06-04 21:54:11 MarkDuplicates Tracking 566082 as yet unmatched pairs. 23078 records in RAM.
INFO 2026-06-04 21:54:13 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:70,209,644
INFO 2026-06-04 21:54:13 MarkDuplicates Tracking 564410 as yet unmatched pairs. 21392 records in RAM.
INFO 2026-06-04 21:54:15 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr10:73,773,267
INFO 2026-06-04 21:54:15 MarkDuplicates Tracking 562532 as yet unmatched pairs. 19503 records in RAM.
INFO 2026-06-04 21:54:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:77,843,514
INFO 2026-06-04 21:54:17 MarkDuplicates Tracking 560697 as yet unmatched pairs. 17655 records in RAM.
INFO 2026-06-04 21:54:18 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:86,936,779
INFO 2026-06-04 21:54:18 MarkDuplicates Tracking 559007 as yet unmatched pairs. 15957 records in RAM.
INFO 2026-06-04 21:54:20 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:92,690,224
INFO 2026-06-04 21:54:20 MarkDuplicates Tracking 557999 as yet unmatched pairs. 14941 records in RAM.
INFO 2026-06-04 21:54:22 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:95,866,175
INFO 2026-06-04 21:54:22 MarkDuplicates Tracking 555866 as yet unmatched pairs. 12798 records in RAM.
INFO 2026-06-04 21:54:23 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:97,381,757
INFO 2026-06-04 21:54:23 MarkDuplicates Tracking 553579 as yet unmatched pairs. 10496 records in RAM.
INFO 2026-06-04 21:54:25 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:101,803,871
INFO 2026-06-04 21:54:25 MarkDuplicates Tracking 552432 as yet unmatched pairs. 9344 records in RAM.
INFO 2026-06-04 21:54:26 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:103,603,060
INFO 2026-06-04 21:54:26 MarkDuplicates Tracking 549746 as yet unmatched pairs. 6641 records in RAM.
INFO 2026-06-04 21:54:28 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:114,300,575
INFO 2026-06-04 21:54:28 MarkDuplicates Tracking 548147 as yet unmatched pairs. 5031 records in RAM.
INFO 2026-06-04 21:54:29 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:121,479,727
INFO 2026-06-04 21:54:29 MarkDuplicates Tracking 546794 as yet unmatched pairs. 3672 records in RAM.
INFO 2026-06-04 21:54:31 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:127,339,021
INFO 2026-06-04 21:54:31 MarkDuplicates Tracking 544768 as yet unmatched pairs. 1639 records in RAM.
INFO 2026-06-04 21:54:34 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr11:319,970
INFO 2026-06-04 21:54:34 MarkDuplicates Tracking 545034 as yet unmatched pairs. 64503 records in RAM.
INFO 2026-06-04 21:54:36 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr11:842,434
INFO 2026-06-04 21:54:36 MarkDuplicates Tracking 540353 as yet unmatched pairs. 59813 records in RAM.
INFO 2026-06-04 21:54:37 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:2,945,594
INFO 2026-06-04 21:54:37 MarkDuplicates Tracking 538248 as yet unmatched pairs. 57706 records in RAM.
INFO 2026-06-04 21:54:39 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:6,619,195
INFO 2026-06-04 21:54:39 MarkDuplicates Tracking 536241 as yet unmatched pairs. 55691 records in RAM.
INFO 2026-06-04 21:54:41 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:9,858,248
INFO 2026-06-04 21:54:41 MarkDuplicates Tracking 534393 as yet unmatched pairs. 53836 records in RAM.
INFO 2026-06-04 21:54:42 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:16,754,942
INFO 2026-06-04 21:54:42 MarkDuplicates Tracking 533466 as yet unmatched pairs. 52903 records in RAM.
INFO 2026-06-04 21:54:44 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:27,498,662
INFO 2026-06-04 21:54:44 MarkDuplicates Tracking 531183 as yet unmatched pairs. 50607 records in RAM.
INFO 2026-06-04 21:54:45 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:35,208,113
INFO 2026-06-04 21:54:45 MarkDuplicates Tracking 530552 as yet unmatched pairs. 49961 records in RAM.
INFO 2026-06-04 21:54:47 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:46,649,167
INFO 2026-06-04 21:54:47 MarkDuplicates Tracking 527407 as yet unmatched pairs. 46810 records in RAM.
INFO 2026-06-04 21:54:49 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:47,724,634
INFO 2026-06-04 21:54:49 MarkDuplicates Tracking 525690 as yet unmatched pairs. 45092 records in RAM.
INFO 2026-06-04 21:54:50 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:57,801,909
INFO 2026-06-04 21:54:50 MarkDuplicates Tracking 524807 as yet unmatched pairs. 44200 records in RAM.
INFO 2026-06-04 21:54:52 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:61,419,955
INFO 2026-06-04 21:54:52 MarkDuplicates Tracking 522598 as yet unmatched pairs. 41973 records in RAM.
INFO 2026-06-04 21:54:54 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr11:62,526,773
INFO 2026-06-04 21:54:54 MarkDuplicates Tracking 521561 as yet unmatched pairs. 40935 records in RAM.
INFO 2026-06-04 21:54:56 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:62,626,876
INFO 2026-06-04 21:54:56 MarkDuplicates Tracking 518992 as yet unmatched pairs. 38363 records in RAM.
INFO 2026-06-04 21:54:57 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:63,974,666
INFO 2026-06-04 21:54:57 MarkDuplicates Tracking 517265 as yet unmatched pairs. 36630 records in RAM.
INFO 2026-06-04 21:54:59 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:64,832,891
INFO 2026-06-04 21:54:59 MarkDuplicates Tracking 514660 as yet unmatched pairs. 34022 records in RAM.
INFO 2026-06-04 21:55:01 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:65,539,218
INFO 2026-06-04 21:55:01 MarkDuplicates Tracking 513121 as yet unmatched pairs. 32409 records in RAM.
INFO 2026-06-04 21:55:02 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,626,986
INFO 2026-06-04 21:55:02 MarkDuplicates Tracking 510674 as yet unmatched pairs. 29951 records in RAM.
INFO 2026-06-04 21:55:04 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,629
INFO 2026-06-04 21:55:04 MarkDuplicates Tracking 508212 as yet unmatched pairs. 27487 records in RAM.
INFO 2026-06-04 21:55:05 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:67,311,743
INFO 2026-06-04 21:55:05 MarkDuplicates Tracking 506339 as yet unmatched pairs. 25599 records in RAM.
INFO 2026-06-04 21:55:07 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:68,436,908
INFO 2026-06-04 21:55:07 MarkDuplicates Tracking 504027 as yet unmatched pairs. 23269 records in RAM.
INFO 2026-06-04 21:55:08 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:70,338,375
INFO 2026-06-04 21:55:08 MarkDuplicates Tracking 502026 as yet unmatched pairs. 21263 records in RAM.
INFO 2026-06-04 21:55:11 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr11:72,098,366
INFO 2026-06-04 21:55:11 MarkDuplicates Tracking 501264 as yet unmatched pairs. 20492 records in RAM.
INFO 2026-06-04 21:55:12 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:74,033,760
INFO 2026-06-04 21:55:12 MarkDuplicates Tracking 498272 as yet unmatched pairs. 17493 records in RAM.
INFO 2026-06-04 21:55:14 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:78,250,158
INFO 2026-06-04 21:55:14 MarkDuplicates Tracking 496414 as yet unmatched pairs. 15633 records in RAM.
INFO 2026-06-04 21:55:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:94,620,911
INFO 2026-06-04 21:55:16 MarkDuplicates Tracking 494491 as yet unmatched pairs. 13696 records in RAM.
INFO 2026-06-04 21:55:17 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:102,448,849
INFO 2026-06-04 21:55:17 MarkDuplicates Tracking 494869 as yet unmatched pairs. 14071 records in RAM.
INFO 2026-06-04 21:55:19 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:114,063,487
INFO 2026-06-04 21:55:19 MarkDuplicates Tracking 492071 as yet unmatched pairs. 11263 records in RAM.
INFO 2026-06-04 21:55:20 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:118,260,077
INFO 2026-06-04 21:55:20 MarkDuplicates Tracking 490494 as yet unmatched pairs. 9682 records in RAM.
INFO 2026-06-04 21:55:22 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,355
INFO 2026-06-04 21:55:22 MarkDuplicates Tracking 487408 as yet unmatched pairs. 6592 records in RAM.
INFO 2026-06-04 21:55:23 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,312
INFO 2026-06-04 21:55:23 MarkDuplicates Tracking 485956 as yet unmatched pairs. 5133 records in RAM.
INFO 2026-06-04 21:55:25 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:128,970,863
INFO 2026-06-04 21:55:25 MarkDuplicates Tracking 483690 as yet unmatched pairs. 2850 records in RAM.
INFO 2026-06-04 21:55:27 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:130,189,829
INFO 2026-06-04 21:55:27 MarkDuplicates Tracking 482582 as yet unmatched pairs. 1733 records in RAM.
INFO 2026-06-04 21:55:29 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr12:1,946,254
INFO 2026-06-04 21:55:29 MarkDuplicates Tracking 480006 as yet unmatched pairs. 57528 records in RAM.
INFO 2026-06-04 21:55:31 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr12:6,384,612
INFO 2026-06-04 21:55:31 MarkDuplicates Tracking 478329 as yet unmatched pairs. 55850 records in RAM.
INFO 2026-06-04 21:55:33 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,428
INFO 2026-06-04 21:55:33 MarkDuplicates Tracking 477285 as yet unmatched pairs. 54796 records in RAM.
INFO 2026-06-04 21:55:35 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr12:7,931,467
INFO 2026-06-04 21:55:35 MarkDuplicates Tracking 474396 as yet unmatched pairs. 51901 records in RAM.
INFO 2026-06-04 21:55:37 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:12,718,099
INFO 2026-06-04 21:55:37 MarkDuplicates Tracking 472828 as yet unmatched pairs. 50325 records in RAM.
INFO 2026-06-04 21:55:39 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr12:16,600,750
INFO 2026-06-04 21:55:39 MarkDuplicates Tracking 473757 as yet unmatched pairs. 51248 records in RAM.
INFO 2026-06-04 21:55:41 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:30,715,049
INFO 2026-06-04 21:55:41 MarkDuplicates Tracking 469012 as yet unmatched pairs. 46500 records in RAM.
INFO 2026-06-04 21:55:43 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr12:40,348,430
INFO 2026-06-04 21:55:43 MarkDuplicates Tracking 468992 as yet unmatched pairs. 46478 records in RAM.
INFO 2026-06-04 21:55:45 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr12:47,078,789
INFO 2026-06-04 21:55:45 MarkDuplicates Tracking 465503 as yet unmatched pairs. 42986 records in RAM.
INFO 2026-06-04 21:55:48 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 3s. Last read position: chr12:49,033,450
INFO 2026-06-04 21:55:48 MarkDuplicates Tracking 463602 as yet unmatched pairs. 41082 records in RAM.
INFO 2026-06-04 21:55:51 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr12:49,642,884
INFO 2026-06-04 21:55:51 MarkDuplicates Tracking 461807 as yet unmatched pairs. 39284 records in RAM.
INFO 2026-06-04 21:55:53 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr12:51,919,078
INFO 2026-06-04 21:55:53 MarkDuplicates Tracking 459872 as yet unmatched pairs. 37343 records in RAM.
INFO 2026-06-04 21:55:55 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr12:52,904,929
INFO 2026-06-04 21:55:55 MarkDuplicates Tracking 457771 as yet unmatched pairs. 35236 records in RAM.
INFO 2026-06-04 21:55:58 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr12:53,298,074
INFO 2026-06-04 21:55:58 MarkDuplicates Tracking 460050 as yet unmatched pairs. 37514 records in RAM.
INFO 2026-06-04 21:56:01 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr12:54,281,859
INFO 2026-06-04 21:56:01 MarkDuplicates Tracking 457066 as yet unmatched pairs. 34523 records in RAM.
INFO 2026-06-04 21:56:04 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 3s. Last read position: chr12:56,042,449
INFO 2026-06-04 21:56:04 MarkDuplicates Tracking 453042 as yet unmatched pairs. 30497 records in RAM.
INFO 2026-06-04 21:56:06 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr12:56,356,132
INFO 2026-06-04 21:56:06 MarkDuplicates Tracking 450820 as yet unmatched pairs. 28272 records in RAM.
INFO 2026-06-04 21:56:09 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr12:57,094,624
INFO 2026-06-04 21:56:09 MarkDuplicates Tracking 453579 as yet unmatched pairs. 31026 records in RAM.
INFO 2026-06-04 21:56:12 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr12:57,196,130
INFO 2026-06-04 21:56:12 MarkDuplicates Tracking 447361 as yet unmatched pairs. 24807 records in RAM.
INFO 2026-06-04 21:56:16 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 4s. Last read position: chr12:57,746,188
INFO 2026-06-04 21:56:16 MarkDuplicates Tracking 445600 as yet unmatched pairs. 23041 records in RAM.
INFO 2026-06-04 21:56:18 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr12:67,657,389
INFO 2026-06-04 21:56:18 MarkDuplicates Tracking 443227 as yet unmatched pairs. 20662 records in RAM.
INFO 2026-06-04 21:56:21 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr12:76,060,186
INFO 2026-06-04 21:56:21 MarkDuplicates Tracking 443624 as yet unmatched pairs. 21056 records in RAM.
INFO 2026-06-04 21:56:23 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr12:94,582,475
INFO 2026-06-04 21:56:23 MarkDuplicates Tracking 439818 as yet unmatched pairs. 17247 records in RAM.
INFO 2026-06-04 21:56:26 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr12:103,937,792
INFO 2026-06-04 21:56:26 MarkDuplicates Tracking 438124 as yet unmatched pairs. 15543 records in RAM.
INFO 2026-06-04 21:56:28 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr12:109,258,358
INFO 2026-06-04 21:56:28 MarkDuplicates Tracking 436234 as yet unmatched pairs. 13652 records in RAM.
INFO 2026-06-04 21:56:31 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr12:112,184,515
INFO 2026-06-04 21:56:31 MarkDuplicates Tracking 434647 as yet unmatched pairs. 12055 records in RAM.
INFO 2026-06-04 21:56:33 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:114,674,374
INFO 2026-06-04 21:56:33 MarkDuplicates Tracking 433407 as yet unmatched pairs. 10803 records in RAM.
INFO 2026-06-04 21:56:37 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 4s. Last read position: chr12:120,163,070
INFO 2026-06-04 21:56:37 MarkDuplicates Tracking 430658 as yet unmatched pairs. 8044 records in RAM.
INFO 2026-06-04 21:56:40 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr12:122,079,201
INFO 2026-06-04 21:56:40 MarkDuplicates Tracking 428541 as yet unmatched pairs. 5919 records in RAM.
INFO 2026-06-04 21:56:42 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr12:123,686,971
INFO 2026-06-04 21:56:42 MarkDuplicates Tracking 426606 as yet unmatched pairs. 3967 records in RAM.
INFO 2026-06-04 21:56:45 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr12:131,911,956
INFO 2026-06-04 21:56:45 MarkDuplicates Tracking 424985 as yet unmatched pairs. 2344 records in RAM.
INFO 2026-06-04 21:56:48 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 3s. Last read position: chr13:19,824,483
INFO 2026-06-04 21:56:48 MarkDuplicates Tracking 422581 as yet unmatched pairs. 17353 records in RAM.
INFO 2026-06-04 21:56:50 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr13:26,050,881
INFO 2026-06-04 21:56:50 MarkDuplicates Tracking 421066 as yet unmatched pairs. 15824 records in RAM.
INFO 2026-06-04 21:56:52 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr13:36,853,453
INFO 2026-06-04 21:56:52 MarkDuplicates Tracking 419412 as yet unmatched pairs. 14164 records in RAM.
INFO 2026-06-04 21:56:55 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr13:44,434,707
INFO 2026-06-04 21:56:55 MarkDuplicates Tracking 421871 as yet unmatched pairs. 16613 records in RAM.
INFO 2026-06-04 21:56:58 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 3s. Last read position: chr13:49,186,031
INFO 2026-06-04 21:56:58 MarkDuplicates Tracking 415582 as yet unmatched pairs. 10315 records in RAM.
INFO 2026-06-04 21:57:02 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 3s. Last read position: chr13:75,856,581
INFO 2026-06-04 21:57:02 MarkDuplicates Tracking 414561 as yet unmatched pairs. 9284 records in RAM.
INFO 2026-06-04 21:57:05 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 3s. Last read position: chr13:98,466,543
INFO 2026-06-04 21:57:05 MarkDuplicates Tracking 412064 as yet unmatched pairs. 6787 records in RAM.
INFO 2026-06-04 21:57:07 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr13:109,784,963
INFO 2026-06-04 21:57:07 MarkDuplicates Tracking 409921 as yet unmatched pairs. 4636 records in RAM.
INFO 2026-06-04 21:57:10 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 3s. Last read position: chr13:110,506,587
INFO 2026-06-04 21:57:10 MarkDuplicates Tracking 408786 as yet unmatched pairs. 3501 records in RAM.
INFO 2026-06-04 21:57:13 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr13:113,832,449
INFO 2026-06-04 21:57:13 MarkDuplicates Tracking 406236 as yet unmatched pairs. 948 records in RAM.
INFO 2026-06-04 21:57:17 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 4s. Last read position: chr14:21,427,966
INFO 2026-06-04 21:57:17 MarkDuplicates Tracking 403911 as yet unmatched pairs. 33036 records in RAM.
INFO 2026-06-04 21:57:20 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr14:23,321,721
INFO 2026-06-04 21:57:20 MarkDuplicates Tracking 403105 as yet unmatched pairs. 32224 records in RAM.
INFO 2026-06-04 21:57:23 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 3s. Last read position: chr14:24,337,148
INFO 2026-06-04 21:57:23 MarkDuplicates Tracking 399951 as yet unmatched pairs. 29065 records in RAM.
INFO 2026-06-04 21:57:25 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr14:34,775,990
INFO 2026-06-04 21:57:25 MarkDuplicates Tracking 398283 as yet unmatched pairs. 27393 records in RAM.
INFO 2026-06-04 21:57:28 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 3s. Last read position: chr14:44,964,418
INFO 2026-06-04 21:57:28 MarkDuplicates Tracking 396076 as yet unmatched pairs. 25182 records in RAM.
INFO 2026-06-04 21:57:31 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr14:52,919,257
INFO 2026-06-04 21:57:31 MarkDuplicates Tracking 394523 as yet unmatched pairs. 23609 records in RAM.
INFO 2026-06-04 21:57:34 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 3s. Last read position: chr14:61,280,601
INFO 2026-06-04 21:57:34 MarkDuplicates Tracking 392869 as yet unmatched pairs. 21944 records in RAM.
INFO 2026-06-04 21:57:37 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr14:64,731,713
INFO 2026-06-04 21:57:37 MarkDuplicates Tracking 390891 as yet unmatched pairs. 19959 records in RAM.
INFO 2026-06-04 21:57:41 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 4s. Last read position: chr14:68,877,222
INFO 2026-06-04 21:57:41 MarkDuplicates Tracking 389526 as yet unmatched pairs. 18586 records in RAM.
INFO 2026-06-04 21:57:43 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr14:73,256,386
INFO 2026-06-04 21:57:43 MarkDuplicates Tracking 387212 as yet unmatched pairs. 16266 records in RAM.
INFO 2026-06-04 21:57:46 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr14:74,507,199
INFO 2026-06-04 21:57:46 MarkDuplicates Tracking 386540 as yet unmatched pairs. 15591 records in RAM.
INFO 2026-06-04 21:57:48 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr14:75,279,071
INFO 2026-06-04 21:57:48 MarkDuplicates Tracking 388812 as yet unmatched pairs. 17858 records in RAM.
INFO 2026-06-04 21:57:51 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 3s. Last read position: chr14:77,616,512
INFO 2026-06-04 21:57:51 MarkDuplicates Tracking 381418 as yet unmatched pairs. 10462 records in RAM.
INFO 2026-06-04 21:57:54 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr14:90,676,579
INFO 2026-06-04 21:57:54 MarkDuplicates Tracking 379554 as yet unmatched pairs. 8568 records in RAM.
INFO 2026-06-04 21:57:57 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 3s. Last read position: chr14:95,436,859
INFO 2026-06-04 21:57:57 MarkDuplicates Tracking 377916 as yet unmatched pairs. 6929 records in RAM.
INFO 2026-06-04 21:58:00 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr14:102,012,451
INFO 2026-06-04 21:58:00 MarkDuplicates Tracking 376265 as yet unmatched pairs. 5270 records in RAM.
INFO 2026-06-04 21:58:03 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr14:103,685,682
INFO 2026-06-04 21:58:03 MarkDuplicates Tracking 374790 as yet unmatched pairs. 3785 records in RAM.
INFO 2026-06-04 21:58:05 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr14:104,955,506
INFO 2026-06-04 21:58:05 MarkDuplicates Tracking 371916 as yet unmatched pairs. 906 records in RAM.
INFO 2026-06-04 21:58:08 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 3s. Last read position: chr15:25,371,456
INFO 2026-06-04 21:58:08 MarkDuplicates Tracking 370277 as yet unmatched pairs. 35780 records in RAM.
INFO 2026-06-04 21:58:11 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr15:30,553,896
INFO 2026-06-04 21:58:11 MarkDuplicates Tracking 368576 as yet unmatched pairs. 34070 records in RAM.
INFO 2026-06-04 21:58:14 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 3s. Last read position: chr15:34,381,803
INFO 2026-06-04 21:58:14 MarkDuplicates Tracking 369471 as yet unmatched pairs. 34956 records in RAM.
INFO 2026-06-04 21:58:16 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr15:34,530,239
INFO 2026-06-04 21:58:16 MarkDuplicates Tracking 366514 as yet unmatched pairs. 31999 records in RAM.
INFO 2026-06-04 21:58:19 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr15:40,853,130
INFO 2026-06-04 21:58:19 MarkDuplicates Tracking 365215 as yet unmatched pairs. 30690 records in RAM.
INFO 2026-06-04 21:58:21 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr15:42,409,798
INFO 2026-06-04 21:58:21 MarkDuplicates Tracking 363414 as yet unmatched pairs. 28886 records in RAM.
INFO 2026-06-04 21:58:24 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr15:43,792,982
INFO 2026-06-04 21:58:24 MarkDuplicates Tracking 365134 as yet unmatched pairs. 30605 records in RAM.
INFO 2026-06-04 21:58:26 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr15:45,101,965
INFO 2026-06-04 21:58:26 MarkDuplicates Tracking 360490 as yet unmatched pairs. 25959 records in RAM.
INFO 2026-06-04 21:58:30 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 4s. Last read position: chr15:45,163,881
INFO 2026-06-04 21:58:30 MarkDuplicates Tracking 358681 as yet unmatched pairs. 24150 records in RAM.
INFO 2026-06-04 21:58:33 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr15:50,726,287
INFO 2026-06-04 21:58:33 MarkDuplicates Tracking 355640 as yet unmatched pairs. 21109 records in RAM.
INFO 2026-06-04 21:58:36 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr15:57,438,824
INFO 2026-06-04 21:58:36 MarkDuplicates Tracking 353984 as yet unmatched pairs. 19448 records in RAM.
INFO 2026-06-04 21:58:38 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr15:63,609,119
INFO 2026-06-04 21:58:38 MarkDuplicates Tracking 352053 as yet unmatched pairs. 17513 records in RAM.
INFO 2026-06-04 21:58:41 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr15:64,674,764
INFO 2026-06-04 21:58:41 MarkDuplicates Tracking 349930 as yet unmatched pairs. 15387 records in RAM.
INFO 2026-06-04 21:58:43 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr15:68,181,180
INFO 2026-06-04 21:58:43 MarkDuplicates Tracking 348003 as yet unmatched pairs. 13449 records in RAM.
INFO 2026-06-04 21:58:47 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 3s. Last read position: chr15:72,250,944
INFO 2026-06-04 21:58:47 MarkDuplicates Tracking 346610 as yet unmatched pairs. 12050 records in RAM.
INFO 2026-06-04 21:58:49 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr15:74,848,624
INFO 2026-06-04 21:58:49 MarkDuplicates Tracking 344403 as yet unmatched pairs. 9841 records in RAM.
INFO 2026-06-04 21:58:52 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr15:77,179,103
INFO 2026-06-04 21:58:52 MarkDuplicates Tracking 342554 as yet unmatched pairs. 7982 records in RAM.
INFO 2026-06-04 21:58:55 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr15:84,021,523
INFO 2026-06-04 21:58:55 MarkDuplicates Tracking 340890 as yet unmatched pairs. 6312 records in RAM.
INFO 2026-06-04 21:58:57 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr15:85,741,251
INFO 2026-06-04 21:58:57 MarkDuplicates Tracking 339264 as yet unmatched pairs. 4675 records in RAM.
INFO 2026-06-04 21:58:59 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr15:90,484,338
INFO 2026-06-04 21:58:59 MarkDuplicates Tracking 337486 as yet unmatched pairs. 2891 records in RAM.
INFO 2026-06-04 21:59:04 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 4s. Last read position: chr15:98,916,071
INFO 2026-06-04 21:59:04 MarkDuplicates Tracking 335660 as yet unmatched pairs. 1048 records in RAM.
INFO 2026-06-04 21:59:07 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr16:576,211
INFO 2026-06-04 21:59:07 MarkDuplicates Tracking 334307 as yet unmatched pairs. 52107 records in RAM.
INFO 2026-06-04 21:59:09 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr16:1,534,499
INFO 2026-06-04 21:59:09 MarkDuplicates Tracking 332320 as yet unmatched pairs. 50119 records in RAM.
INFO 2026-06-04 21:59:12 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr16:2,111,637
INFO 2026-06-04 21:59:12 MarkDuplicates Tracking 329095 as yet unmatched pairs. 46893 records in RAM.
INFO 2026-06-04 21:59:14 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr16:2,763,065
INFO 2026-06-04 21:59:14 MarkDuplicates Tracking 328413 as yet unmatched pairs. 46206 records in RAM.
INFO 2026-06-04 21:59:17 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr16:3,065,800
INFO 2026-06-04 21:59:17 MarkDuplicates Tracking 325514 as yet unmatched pairs. 43303 records in RAM.
INFO 2026-06-04 21:59:19 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr16:4,609,859
INFO 2026-06-04 21:59:19 MarkDuplicates Tracking 324005 as yet unmatched pairs. 41786 records in RAM.
INFO 2026-06-04 21:59:23 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 3s. Last read position: chr16:10,743,982
INFO 2026-06-04 21:59:23 MarkDuplicates Tracking 321542 as yet unmatched pairs. 39318 records in RAM.
INFO 2026-06-04 21:59:25 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:14,864,680
INFO 2026-06-04 21:59:25 MarkDuplicates Tracking 320176 as yet unmatched pairs. 37948 records in RAM.
INFO 2026-06-04 21:59:28 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr16:15,366,685
INFO 2026-06-04 21:59:28 MarkDuplicates Tracking 319036 as yet unmatched pairs. 36808 records in RAM.
INFO 2026-06-04 21:59:30 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr16:16,331,424
INFO 2026-06-04 21:59:30 MarkDuplicates Tracking 318379 as yet unmatched pairs. 36150 records in RAM.
INFO 2026-06-04 21:59:33 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr16:18,349,091
INFO 2026-06-04 21:59:33 MarkDuplicates Tracking 318544 as yet unmatched pairs. 36309 records in RAM.
INFO 2026-06-04 21:59:35 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr16:18,571,278
INFO 2026-06-04 21:59:35 MarkDuplicates Tracking 316700 as yet unmatched pairs. 34462 records in RAM.
INFO 2026-06-04 21:59:38 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 3s. Last read position: chr16:21,403,898
INFO 2026-06-04 21:59:38 MarkDuplicates Tracking 316482 as yet unmatched pairs. 34240 records in RAM.
INFO 2026-06-04 21:59:41 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr16:21,836,328
INFO 2026-06-04 21:59:41 MarkDuplicates Tracking 314253 as yet unmatched pairs. 32011 records in RAM.
INFO 2026-06-04 21:59:43 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr16:22,533,639
INFO 2026-06-04 21:59:43 MarkDuplicates Tracking 313433 as yet unmatched pairs. 31190 records in RAM.
INFO 2026-06-04 21:59:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr16:24,180,918
INFO 2026-06-04 21:59:45 MarkDuplicates Tracking 312537 as yet unmatched pairs. 30294 records in RAM.
INFO 2026-06-04 21:59:48 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr16:28,593,287
INFO 2026-06-04 21:59:48 MarkDuplicates Tracking 310923 as yet unmatched pairs. 28678 records in RAM.
INFO 2026-06-04 21:59:50 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr16:29,383,869
INFO 2026-06-04 21:59:50 MarkDuplicates Tracking 310041 as yet unmatched pairs. 27796 records in RAM.
INFO 2026-06-04 21:59:52 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr16:29,859,282
INFO 2026-06-04 21:59:52 MarkDuplicates Tracking 309213 as yet unmatched pairs. 26965 records in RAM.
INFO 2026-06-04 21:59:55 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 3s. Last read position: chr16:30,276,050
INFO 2026-06-04 21:59:55 MarkDuplicates Tracking 307327 as yet unmatched pairs. 25078 records in RAM.
INFO 2026-06-04 21:59:59 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 3s. Last read position: chr16:30,768,403
INFO 2026-06-04 21:59:59 MarkDuplicates Tracking 305530 as yet unmatched pairs. 23270 records in RAM.
INFO 2026-06-04 22:00:03 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 4s. Last read position: chr16:31,191,409
INFO 2026-06-04 22:00:03 MarkDuplicates Tracking 306687 as yet unmatched pairs. 24427 records in RAM.
INFO 2026-06-04 22:00:05 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr16:51,140,561
INFO 2026-06-04 22:00:05 MarkDuplicates Tracking 302479 as yet unmatched pairs. 20216 records in RAM.
INFO 2026-06-04 22:00:08 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr16:56,682,554
INFO 2026-06-04 22:00:08 MarkDuplicates Tracking 304047 as yet unmatched pairs. 21784 records in RAM.
INFO 2026-06-04 22:00:11 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr16:58,002,481
INFO 2026-06-04 22:00:11 MarkDuplicates Tracking 297997 as yet unmatched pairs. 15733 records in RAM.
INFO 2026-06-04 22:00:14 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr16:67,201,738
INFO 2026-06-04 22:00:14 MarkDuplicates Tracking 295684 as yet unmatched pairs. 13413 records in RAM.
INFO 2026-06-04 22:00:16 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr16:68,324,810
INFO 2026-06-04 22:00:16 MarkDuplicates Tracking 293790 as yet unmatched pairs. 11517 records in RAM.
INFO 2026-06-04 22:00:19 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 3s. Last read position: chr16:70,144,431
INFO 2026-06-04 22:00:19 MarkDuplicates Tracking 291705 as yet unmatched pairs. 9431 records in RAM.
INFO 2026-06-04 22:00:22 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr16:72,795,417
INFO 2026-06-04 22:00:22 MarkDuplicates Tracking 290320 as yet unmatched pairs. 8041 records in RAM.
INFO 2026-06-04 22:00:24 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chr16:75,696,017
INFO 2026-06-04 22:00:24 MarkDuplicates Tracking 288066 as yet unmatched pairs. 5786 records in RAM.
INFO 2026-06-04 22:00:27 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr16:85,805,734
INFO 2026-06-04 22:00:27 MarkDuplicates Tracking 287057 as yet unmatched pairs. 4763 records in RAM.
INFO 2026-06-04 22:00:30 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 3s. Last read position: chr16:89,281,540
INFO 2026-06-04 22:00:30 MarkDuplicates Tracking 284351 as yet unmatched pairs. 2056 records in RAM.
INFO 2026-06-04 22:00:33 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 3s. Last read position: chr17:733,172
INFO 2026-06-04 22:00:33 MarkDuplicates Tracking 282111 as yet unmatched pairs. 76242 records in RAM.
INFO 2026-06-04 22:00:36 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr17:1,658,259
INFO 2026-06-04 22:00:36 MarkDuplicates Tracking 280381 as yet unmatched pairs. 74509 records in RAM.
INFO 2026-06-04 22:00:39 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr17:3,937,615
INFO 2026-06-04 22:00:39 MarkDuplicates Tracking 278293 as yet unmatched pairs. 72418 records in RAM.
INFO 2026-06-04 22:00:42 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 3s. Last read position: chr17:5,023,875
INFO 2026-06-04 22:00:42 MarkDuplicates Tracking 277374 as yet unmatched pairs. 71494 records in RAM.
INFO 2026-06-04 22:00:46 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 3s. Last read position: chr17:7,311,838
INFO 2026-06-04 22:00:46 MarkDuplicates Tracking 274888 as yet unmatched pairs. 69007 records in RAM.
INFO 2026-06-04 22:00:51 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 4s. Last read position: chr17:7,513,331
INFO 2026-06-04 22:00:51 MarkDuplicates Tracking 275017 as yet unmatched pairs. 69136 records in RAM.
INFO 2026-06-04 22:00:53 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr17:7,911,645
INFO 2026-06-04 22:00:53 MarkDuplicates Tracking 270922 as yet unmatched pairs. 65041 records in RAM.
INFO 2026-06-04 22:00:57 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 3s. Last read position: chr17:8,545,450
INFO 2026-06-04 22:00:57 MarkDuplicates Tracking 269326 as yet unmatched pairs. 63444 records in RAM.
INFO 2026-06-04 22:00:59 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr17:16,382,521
INFO 2026-06-04 22:00:59 MarkDuplicates Tracking 267987 as yet unmatched pairs. 62101 records in RAM.
INFO 2026-06-04 22:01:02 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 3s. Last read position: chr17:18,184,484
INFO 2026-06-04 22:01:02 MarkDuplicates Tracking 265465 as yet unmatched pairs. 59569 records in RAM.
INFO 2026-06-04 22:04:04 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 181s. Last read position: chr17:27,304,893
INFO 2026-06-04 22:04:04 MarkDuplicates Tracking 264515 as yet unmatched pairs. 58617 records in RAM.
INFO 2026-06-04 22:04:08 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 4s. Last read position: chr17:28,913,213
INFO 2026-06-04 22:04:08 MarkDuplicates Tracking 261749 as yet unmatched pairs. 55837 records in RAM.
INFO 2026-06-04 22:04:10 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr17:31,336,815
INFO 2026-06-04 22:04:10 MarkDuplicates Tracking 259933 as yet unmatched pairs. 54016 records in RAM.
INFO 2026-06-04 22:04:14 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 3s. Last read position: chr17:35,844,121
INFO 2026-06-04 22:04:14 MarkDuplicates Tracking 259106 as yet unmatched pairs. 53188 records in RAM.
INFO 2026-06-04 22:04:16 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr17:38,712,756
INFO 2026-06-04 22:04:16 MarkDuplicates Tracking 256742 as yet unmatched pairs. 50822 records in RAM.
INFO 2026-06-04 22:04:18 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr17:39,530,831
INFO 2026-06-04 22:04:18 MarkDuplicates Tracking 254644 as yet unmatched pairs. 48722 records in RAM.
INFO 2026-06-04 22:04:22 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 3s. Last read position: chr17:39,723,910
INFO 2026-06-04 22:04:22 MarkDuplicates Tracking 253959 as yet unmatched pairs. 48036 records in RAM.
INFO 2026-06-04 22:04:25 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr17:40,443,815
INFO 2026-06-04 22:04:25 MarkDuplicates Tracking 252085 as yet unmatched pairs. 46158 records in RAM.
INFO 2026-06-04 22:04:28 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 3s. Last read position: chr17:42,324,741
INFO 2026-06-04 22:04:28 MarkDuplicates Tracking 249059 as yet unmatched pairs. 43127 records in RAM.
INFO 2026-06-04 22:04:31 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr17:43,513,457
INFO 2026-06-04 22:04:31 MarkDuplicates Tracking 246825 as yet unmatched pairs. 40890 records in RAM.
INFO 2026-06-04 22:04:34 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 3s. Last read position: chr17:45,112,574
INFO 2026-06-04 22:04:34 MarkDuplicates Tracking 244898 as yet unmatched pairs. 38960 records in RAM.
INFO 2026-06-04 22:04:36 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr17:47,049,610
INFO 2026-06-04 22:04:36 MarkDuplicates Tracking 243780 as yet unmatched pairs. 37838 records in RAM.
INFO 2026-06-04 22:04:39 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr17:49,404,959
INFO 2026-06-04 22:04:39 MarkDuplicates Tracking 242304 as yet unmatched pairs. 36362 records in RAM.
INFO 2026-06-04 22:04:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,767
INFO 2026-06-04 22:04:41 MarkDuplicates Tracking 245832 as yet unmatched pairs. 39887 records in RAM.
INFO 2026-06-04 22:04:44 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 3s. Last read position: chr17:50,189,419
INFO 2026-06-04 22:04:44 MarkDuplicates Tracking 245110 as yet unmatched pairs. 39165 records in RAM.
INFO 2026-06-04 22:04:47 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,796
INFO 2026-06-04 22:04:47 MarkDuplicates Tracking 249374 as yet unmatched pairs. 43424 records in RAM.
INFO 2026-06-04 22:04:50 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,605
INFO 2026-06-04 22:04:50 MarkDuplicates Tracking 255568 as yet unmatched pairs. 49618 records in RAM.
INFO 2026-06-04 22:04:52 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,434
INFO 2026-06-04 22:04:52 MarkDuplicates Tracking 236367 as yet unmatched pairs. 30415 records in RAM.
INFO 2026-06-04 22:04:55 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr17:55,267,923
INFO 2026-06-04 22:04:55 MarkDuplicates Tracking 229958 as yet unmatched pairs. 24006 records in RAM.
INFO 2026-06-04 22:04:57 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr17:59,666,903
INFO 2026-06-04 22:04:57 MarkDuplicates Tracking 230010 as yet unmatched pairs. 24057 records in RAM.
INFO 2026-06-04 22:05:00 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr17:62,627,780
INFO 2026-06-04 22:05:00 MarkDuplicates Tracking 226333 as yet unmatched pairs. 20374 records in RAM.
INFO 2026-06-04 22:05:02 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr17:64,502,547
INFO 2026-06-04 22:05:02 MarkDuplicates Tracking 225052 as yet unmatched pairs. 19089 records in RAM.
INFO 2026-06-04 22:05:05 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr17:68,515,399
INFO 2026-06-04 22:05:05 MarkDuplicates Tracking 227372 as yet unmatched pairs. 21407 records in RAM.
INFO 2026-06-04 22:05:07 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr17:70,132,971
INFO 2026-06-04 22:05:07 MarkDuplicates Tracking 223186 as yet unmatched pairs. 17220 records in RAM.
INFO 2026-06-04 22:05:10 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 3s. Last read position: chr17:75,501,918
INFO 2026-06-04 22:05:10 MarkDuplicates Tracking 218766 as yet unmatched pairs. 12797 records in RAM.
INFO 2026-06-04 22:05:12 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr17:76,009,125
INFO 2026-06-04 22:05:12 MarkDuplicates Tracking 216766 as yet unmatched pairs. 10797 records in RAM.
INFO 2026-06-04 22:05:15 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr17:77,482,323
INFO 2026-06-04 22:05:15 MarkDuplicates Tracking 214784 as yet unmatched pairs. 8814 records in RAM.
INFO 2026-06-04 22:05:17 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr17:80,138,216
INFO 2026-06-04 22:05:17 MarkDuplicates Tracking 212518 as yet unmatched pairs. 6546 records in RAM.
INFO 2026-06-04 22:05:20 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr17:81,447,694
INFO 2026-06-04 22:05:20 MarkDuplicates Tracking 210553 as yet unmatched pairs. 4571 records in RAM.
INFO 2026-06-04 22:05:22 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr17:81,889,293
INFO 2026-06-04 22:05:22 MarkDuplicates Tracking 208385 as yet unmatched pairs. 2397 records in RAM.
INFO 2026-06-04 22:05:25 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: chr17:83,084,983
INFO 2026-06-04 22:05:25 MarkDuplicates Tracking 206371 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-04 22:05:27 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chr18:8,253,330
INFO 2026-06-04 22:05:27 MarkDuplicates Tracking 205838 as yet unmatched pairs. 11219 records in RAM.
INFO 2026-06-04 22:05:30 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 3s. Last read position: chr18:21,508,388
INFO 2026-06-04 22:05:30 MarkDuplicates Tracking 202605 as yet unmatched pairs. 7984 records in RAM.
INFO 2026-06-04 22:05:33 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr18:35,663,629
INFO 2026-06-04 22:05:33 MarkDuplicates Tracking 200975 as yet unmatched pairs. 6343 records in RAM.
INFO 2026-06-04 22:05:36 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 3s. Last read position: chr18:49,575,370
INFO 2026-06-04 22:05:36 MarkDuplicates Tracking 200744 as yet unmatched pairs. 6111 records in RAM.
INFO 2026-06-04 22:05:38 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr18:58,920,036
INFO 2026-06-04 22:05:38 MarkDuplicates Tracking 197728 as yet unmatched pairs. 3095 records in RAM.
INFO 2026-06-04 22:05:42 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 3s. Last read position: chr18:79,069,494
INFO 2026-06-04 22:05:42 MarkDuplicates Tracking 195354 as yet unmatched pairs. 721 records in RAM.
INFO 2026-06-04 22:05:45 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 3s. Last read position: chr19:1,011,365
INFO 2026-06-04 22:05:45 MarkDuplicates Tracking 194312 as yet unmatched pairs. 84183 records in RAM.
INFO 2026-06-04 22:05:48 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 3s. Last read position: chr19:1,272,427
INFO 2026-06-04 22:05:48 MarkDuplicates Tracking 194460 as yet unmatched pairs. 84328 records in RAM.
INFO 2026-06-04 22:05:50 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 2s. Last read position: chr19:2,109,908
INFO 2026-06-04 22:05:50 MarkDuplicates Tracking 189734 as yet unmatched pairs. 79602 records in RAM.
INFO 2026-06-04 22:05:53 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr19:3,381,819
INFO 2026-06-04 22:05:53 MarkDuplicates Tracking 187620 as yet unmatched pairs. 77488 records in RAM.
INFO 2026-06-04 22:05:55 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr19:4,475,557
INFO 2026-06-04 22:05:55 MarkDuplicates Tracking 184787 as yet unmatched pairs. 74654 records in RAM.
INFO 2026-06-04 22:05:58 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr19:5,696,285
INFO 2026-06-04 22:05:58 MarkDuplicates Tracking 182833 as yet unmatched pairs. 72698 records in RAM.
INFO 2026-06-04 22:06:00 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr19:7,184,481
INFO 2026-06-04 22:06:00 MarkDuplicates Tracking 181459 as yet unmatched pairs. 71323 records in RAM.
INFO 2026-06-04 22:06:03 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr19:8,365,915
INFO 2026-06-04 22:06:03 MarkDuplicates Tracking 178649 as yet unmatched pairs. 68513 records in RAM.
INFO 2026-06-04 22:06:06 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr19:10,315,475
INFO 2026-06-04 22:06:06 MarkDuplicates Tracking 176542 as yet unmatched pairs. 66405 records in RAM.
INFO 2026-06-04 22:06:08 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr19:11,041,313
INFO 2026-06-04 22:06:08 MarkDuplicates Tracking 174783 as yet unmatched pairs. 64642 records in RAM.
INFO 2026-06-04 22:06:11 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr19:11,448,581
INFO 2026-06-04 22:06:11 MarkDuplicates Tracking 172716 as yet unmatched pairs. 62573 records in RAM.
INFO 2026-06-04 22:06:14 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 3s. Last read position: chr19:12,938,694
INFO 2026-06-04 22:06:14 MarkDuplicates Tracking 172091 as yet unmatched pairs. 61947 records in RAM.
INFO 2026-06-04 22:06:16 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr19:14,150,493
INFO 2026-06-04 22:06:16 MarkDuplicates Tracking 168396 as yet unmatched pairs. 58252 records in RAM.
INFO 2026-06-04 22:06:19 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 3s. Last read position: chr19:15,179,487
INFO 2026-06-04 22:06:19 MarkDuplicates Tracking 167808 as yet unmatched pairs. 57664 records in RAM.
INFO 2026-06-04 22:06:22 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr19:15,403,512
INFO 2026-06-04 22:06:22 MarkDuplicates Tracking 164899 as yet unmatched pairs. 54755 records in RAM.
INFO 2026-06-04 22:06:25 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 3s. Last read position: chr19:17,365,292
INFO 2026-06-04 22:06:25 MarkDuplicates Tracking 163028 as yet unmatched pairs. 52884 records in RAM.
INFO 2026-06-04 22:06:27 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:18,340,613
INFO 2026-06-04 22:06:27 MarkDuplicates Tracking 160388 as yet unmatched pairs. 50242 records in RAM.
INFO 2026-06-04 22:06:30 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 3s. Last read position: chr19:18,899,902
INFO 2026-06-04 22:06:30 MarkDuplicates Tracking 159103 as yet unmatched pairs. 48954 records in RAM.
INFO 2026-06-04 22:06:32 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr19:23,744,332
INFO 2026-06-04 22:06:32 MarkDuplicates Tracking 156213 as yet unmatched pairs. 46060 records in RAM.
INFO 2026-06-04 22:06:35 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 2s. Last read position: chr19:35,157,419
INFO 2026-06-04 22:06:35 MarkDuplicates Tracking 155276 as yet unmatched pairs. 45118 records in RAM.
INFO 2026-06-04 22:06:38 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 2s. Last read position: chr19:36,121,691
INFO 2026-06-04 22:06:38 MarkDuplicates Tracking 152071 as yet unmatched pairs. 41913 records in RAM.
INFO 2026-06-04 22:06:40 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:38,700,600
INFO 2026-06-04 22:06:40 MarkDuplicates Tracking 150724 as yet unmatched pairs. 40564 records in RAM.
INFO 2026-06-04 22:06:42 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr19:39,407,946
INFO 2026-06-04 22:06:42 MarkDuplicates Tracking 149922 as yet unmatched pairs. 39762 records in RAM.
INFO 2026-06-04 22:06:45 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 2s. Last read position: chr19:39,872,377
INFO 2026-06-04 22:06:45 MarkDuplicates Tracking 147821 as yet unmatched pairs. 37660 records in RAM.
INFO 2026-06-04 22:06:47 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr19:39,889,686
INFO 2026-06-04 22:06:47 MarkDuplicates Tracking 147435 as yet unmatched pairs. 37269 records in RAM.
INFO 2026-06-04 22:06:50 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 2s. Last read position: chr19:39,902,010
INFO 2026-06-04 22:06:50 MarkDuplicates Tracking 145833 as yet unmatched pairs. 35666 records in RAM.
INFO 2026-06-04 22:06:52 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr19:40,371,711
INFO 2026-06-04 22:06:52 MarkDuplicates Tracking 141984 as yet unmatched pairs. 31817 records in RAM.
INFO 2026-06-04 22:06:56 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 3s. Last read position: chr19:40,627,755
INFO 2026-06-04 22:06:56 MarkDuplicates Tracking 143983 as yet unmatched pairs. 33816 records in RAM.
INFO 2026-06-04 22:06:58 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr19:42,079,763
INFO 2026-06-04 22:06:58 MarkDuplicates Tracking 137304 as yet unmatched pairs. 27135 records in RAM.
INFO 2026-06-04 22:07:02 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 3s. Last read position: chr19:42,292,800
INFO 2026-06-04 22:07:02 MarkDuplicates Tracking 136483 as yet unmatched pairs. 26314 records in RAM.
INFO 2026-06-04 22:07:04 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chr19:44,813,575
INFO 2026-06-04 22:07:04 MarkDuplicates Tracking 134242 as yet unmatched pairs. 24069 records in RAM.
INFO 2026-06-04 22:07:07 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 3s. Last read position: chr19:45,421,367
INFO 2026-06-04 22:07:07 MarkDuplicates Tracking 131632 as yet unmatched pairs. 21459 records in RAM.
INFO 2026-06-04 22:07:10 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chr19:45,804,554
INFO 2026-06-04 22:07:10 MarkDuplicates Tracking 128922 as yet unmatched pairs. 18748 records in RAM.
INFO 2026-06-04 22:07:12 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 2s. Last read position: chr19:47,414,801
INFO 2026-06-04 22:07:12 MarkDuplicates Tracking 126728 as yet unmatched pairs. 16554 records in RAM.
INFO 2026-06-04 22:07:15 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr19:48,635,589
INFO 2026-06-04 22:07:15 MarkDuplicates Tracking 125627 as yet unmatched pairs. 15452 records in RAM.
INFO 2026-06-04 22:07:17 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 2s. Last read position: chr19:49,490,260
INFO 2026-06-04 22:07:17 MarkDuplicates Tracking 128481 as yet unmatched pairs. 18304 records in RAM.
INFO 2026-06-04 22:07:20 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chr19:49,803,113
INFO 2026-06-04 22:07:20 MarkDuplicates Tracking 120879 as yet unmatched pairs. 10702 records in RAM.
INFO 2026-06-04 22:07:22 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 2s. Last read position: chr19:50,480,679
INFO 2026-06-04 22:07:22 MarkDuplicates Tracking 120765 as yet unmatched pairs. 10587 records in RAM.
INFO 2026-06-04 22:07:24 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr19:54,131,312
INFO 2026-06-04 22:07:24 MarkDuplicates Tracking 116757 as yet unmatched pairs. 6576 records in RAM.
INFO 2026-06-04 22:07:27 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 2s. Last read position: chr19:55,095,316
INFO 2026-06-04 22:07:27 MarkDuplicates Tracking 115022 as yet unmatched pairs. 4841 records in RAM.
INFO 2026-06-04 22:07:29 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr19:57,280,755
INFO 2026-06-04 22:07:29 MarkDuplicates Tracking 113186 as yet unmatched pairs. 3002 records in RAM.
INFO 2026-06-04 22:07:34 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 4s. Last read position: chr19:58,516,413
INFO 2026-06-04 22:07:34 MarkDuplicates Tracking 111013 as yet unmatched pairs. 826 records in RAM.
INFO 2026-06-04 22:07:36 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr20:3,035,830
INFO 2026-06-04 22:07:36 MarkDuplicates Tracking 108932 as yet unmatched pairs. 29175 records in RAM.
INFO 2026-06-04 22:07:39 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 3s. Last read position: chr20:9,459,688
INFO 2026-06-04 22:07:39 MarkDuplicates Tracking 106935 as yet unmatched pairs. 27177 records in RAM.
INFO 2026-06-04 22:07:41 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 2s. Last read position: chr20:17,481,987
INFO 2026-06-04 22:07:41 MarkDuplicates Tracking 111069 as yet unmatched pairs. 31309 records in RAM.
INFO 2026-06-04 22:07:44 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chr20:20,050,621
INFO 2026-06-04 22:07:44 MarkDuplicates Tracking 103133 as yet unmatched pairs. 23369 records in RAM.
INFO 2026-06-04 22:07:46 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 2s. Last read position: chr20:31,665,893
INFO 2026-06-04 22:07:46 MarkDuplicates Tracking 101316 as yet unmatched pairs. 21548 records in RAM.
INFO 2026-06-04 22:07:49 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 2s. Last read position: chr20:34,757,699
INFO 2026-06-04 22:07:49 MarkDuplicates Tracking 99595 as yet unmatched pairs. 19824 records in RAM.
INFO 2026-06-04 22:07:52 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 2s. Last read position: chr20:36,549,084
INFO 2026-06-04 22:07:52 MarkDuplicates Tracking 98442 as yet unmatched pairs. 18671 records in RAM.
INFO 2026-06-04 22:07:54 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chr20:41,420,842
INFO 2026-06-04 22:07:54 MarkDuplicates Tracking 95577 as yet unmatched pairs. 15806 records in RAM.
INFO 2026-06-04 22:07:57 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chr20:45,335,782
INFO 2026-06-04 22:07:57 MarkDuplicates Tracking 102373 as yet unmatched pairs. 22600 records in RAM.
INFO 2026-06-04 22:07:59 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 2s. Last read position: chr20:48,952,730
INFO 2026-06-04 22:07:59 MarkDuplicates Tracking 91892 as yet unmatched pairs. 12119 records in RAM.
INFO 2026-06-04 22:08:02 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 2s. Last read position: chr20:53,253,608
INFO 2026-06-04 22:08:02 MarkDuplicates Tracking 89878 as yet unmatched pairs. 10105 records in RAM.
INFO 2026-06-04 22:08:04 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 2s. Last read position: chr20:58,895,614
INFO 2026-06-04 22:08:04 MarkDuplicates Tracking 105022 as yet unmatched pairs. 25249 records in RAM.
INFO 2026-06-04 22:08:07 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 3s. Last read position: chr20:58,910,332
INFO 2026-06-04 22:08:07 MarkDuplicates Tracking 92986 as yet unmatched pairs. 13212 records in RAM.
INFO 2026-06-04 22:08:10 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 2s. Last read position: chr20:62,324,445
INFO 2026-06-04 22:08:10 MarkDuplicates Tracking 84946 as yet unmatched pairs. 5172 records in RAM.
INFO 2026-06-04 22:08:13 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 3s. Last read position: chr20:63,521,302
INFO 2026-06-04 22:08:13 MarkDuplicates Tracking 82855 as yet unmatched pairs. 3073 records in RAM.
INFO 2026-06-04 22:08:15 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 2s. Last read position: chr21:6,486,352
INFO 2026-06-04 22:08:15 MarkDuplicates Tracking 79992 as yet unmatched pairs. 12918 records in RAM.
INFO 2026-06-04 22:08:18 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 2s. Last read position: chr21:8,258,913
INFO 2026-06-04 22:08:18 MarkDuplicates Tracking 78694 as yet unmatched pairs. 11616 records in RAM.
INFO 2026-06-04 22:08:19 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,418
INFO 2026-06-04 22:08:19 MarkDuplicates Tracking 79019 as yet unmatched pairs. 11939 records in RAM.
INFO 2026-06-04 22:08:21 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 2s. Last read position: chr21:16,544,743
INFO 2026-06-04 22:08:21 MarkDuplicates Tracking 76810 as yet unmatched pairs. 9729 records in RAM.
INFO 2026-06-04 22:08:24 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr21:32,378,476
INFO 2026-06-04 22:08:24 MarkDuplicates Tracking 75017 as yet unmatched pairs. 7932 records in RAM.
INFO 2026-06-04 22:08:26 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr21:36,156,920
INFO 2026-06-04 22:08:26 MarkDuplicates Tracking 73225 as yet unmatched pairs. 6140 records in RAM.
INFO 2026-06-04 22:08:29 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 2s. Last read position: chr21:41,993,212
INFO 2026-06-04 22:08:29 MarkDuplicates Tracking 71504 as yet unmatched pairs. 4416 records in RAM.
INFO 2026-06-04 22:08:31 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 2s. Last read position: chr21:45,481,971
INFO 2026-06-04 22:08:31 MarkDuplicates Tracking 69909 as yet unmatched pairs. 2818 records in RAM.
INFO 2026-06-04 22:08:34 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 2s. Last read position: chr21:46,555,905
INFO 2026-06-04 22:08:34 MarkDuplicates Tracking 67284 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-04 22:08:36 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 2s. Last read position: chr22:19,431,521
INFO 2026-06-04 22:08:36 MarkDuplicates Tracking 65538 as yet unmatched pairs. 28858 records in RAM.
INFO 2026-06-04 22:08:39 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 3s. Last read position: chr22:21,299,777
INFO 2026-06-04 22:08:39 MarkDuplicates Tracking 63539 as yet unmatched pairs. 26858 records in RAM.
INFO 2026-06-04 22:08:42 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 2s. Last read position: chr22:23,767,564
INFO 2026-06-04 22:08:42 MarkDuplicates Tracking 61788 as yet unmatched pairs. 25107 records in RAM.
INFO 2026-06-04 22:08:46 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:24:01s. Time for last 1,000,000: 3s. Last read position: chr22:25,354,607
INFO 2026-06-04 22:08:46 MarkDuplicates Tracking 59700 as yet unmatched pairs. 23019 records in RAM.
INFO 2026-06-04 22:08:48 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 2s. Last read position: chr22:29,299,250
INFO 2026-06-04 22:08:48 MarkDuplicates Tracking 61166 as yet unmatched pairs. 24485 records in RAM.
INFO 2026-06-04 22:08:51 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chr22:31,124,938
INFO 2026-06-04 22:08:51 MarkDuplicates Tracking 58230 as yet unmatched pairs. 21548 records in RAM.
INFO 2026-06-04 22:08:53 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chr22:32,396,237
INFO 2026-06-04 22:08:53 MarkDuplicates Tracking 54014 as yet unmatched pairs. 17332 records in RAM.
INFO 2026-06-04 22:08:56 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 2s. Last read position: chr22:36,319,560
INFO 2026-06-04 22:08:56 MarkDuplicates Tracking 52863 as yet unmatched pairs. 16179 records in RAM.
INFO 2026-06-04 22:08:58 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 2s. Last read position: chr22:38,089,061
INFO 2026-06-04 22:08:58 MarkDuplicates Tracking 49893 as yet unmatched pairs. 13209 records in RAM.
INFO 2026-06-04 22:09:01 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chr22:39,317,486
INFO 2026-06-04 22:09:01 MarkDuplicates Tracking 51921 as yet unmatched pairs. 15237 records in RAM.
INFO 2026-06-04 22:09:03 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 2s. Last read position: chr22:41,150,085
INFO 2026-06-04 22:09:03 MarkDuplicates Tracking 46677 as yet unmatched pairs. 9991 records in RAM.
INFO 2026-06-04 22:09:06 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 3s. Last read position: chr22:42,086,212
INFO 2026-06-04 22:09:06 MarkDuplicates Tracking 44400 as yet unmatched pairs. 7714 records in RAM.
INFO 2026-06-04 22:09:08 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chr22:46,439,274
INFO 2026-06-04 22:09:08 MarkDuplicates Tracking 42977 as yet unmatched pairs. 6291 records in RAM.
INFO 2026-06-04 22:09:11 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 2s. Last read position: chr22:50,283,062
INFO 2026-06-04 22:09:11 MarkDuplicates Tracking 41131 as yet unmatched pairs. 4439 records in RAM.
INFO 2026-06-04 22:09:14 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 2s. Last read position: chr22:50,504,817
INFO 2026-06-04 22:09:14 MarkDuplicates Tracking 38309 as yet unmatched pairs. 1617 records in RAM.
INFO 2026-06-04 22:09:17 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 3s. Last read position: chrX:3,317,488
INFO 2026-06-04 22:09:17 MarkDuplicates Tracking 36015 as yet unmatched pairs. 30515 records in RAM.
INFO 2026-06-04 22:09:19 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 2s. Last read position: chrX:18,943,781
INFO 2026-06-04 22:09:19 MarkDuplicates Tracking 34174 as yet unmatched pairs. 28668 records in RAM.
INFO 2026-06-04 22:09:23 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 3s. Last read position: chrX:40,054,287
INFO 2026-06-04 22:09:23 MarkDuplicates Tracking 32984 as yet unmatched pairs. 27478 records in RAM.
INFO 2026-06-04 22:09:25 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chrX:43,728,242
INFO 2026-06-04 22:09:25 MarkDuplicates Tracking 31082 as yet unmatched pairs. 25576 records in RAM.
INFO 2026-06-04 22:09:28 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 2s. Last read position: chrX:47,244,847
INFO 2026-06-04 22:09:28 MarkDuplicates Tracking 28959 as yet unmatched pairs. 23453 records in RAM.
INFO 2026-06-04 22:09:31 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 2s. Last read position: chrX:49,039,124
INFO 2026-06-04 22:09:31 MarkDuplicates Tracking 28785 as yet unmatched pairs. 23278 records in RAM.
INFO 2026-06-04 22:09:34 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 2s. Last read position: chrX:53,409,193
INFO 2026-06-04 22:09:34 MarkDuplicates Tracking 24902 as yet unmatched pairs. 19395 records in RAM.
INFO 2026-06-04 22:09:36 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 2s. Last read position: chrX:56,565,082
INFO 2026-06-04 22:09:36 MarkDuplicates Tracking 23336 as yet unmatched pairs. 17829 records in RAM.
INFO 2026-06-04 22:09:38 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chrX:71,240,973
INFO 2026-06-04 22:09:38 MarkDuplicates Tracking 21628 as yet unmatched pairs. 16121 records in RAM.
INFO 2026-06-04 22:09:41 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chrX:72,568,868
INFO 2026-06-04 22:09:41 MarkDuplicates Tracking 19474 as yet unmatched pairs. 13967 records in RAM.
INFO 2026-06-04 22:09:43 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 2s. Last read position: chrX:100,911,094
INFO 2026-06-04 22:09:43 MarkDuplicates Tracking 17682 as yet unmatched pairs. 12175 records in RAM.
INFO 2026-06-04 22:09:46 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:25:01s. Time for last 1,000,000: 2s. Last read position: chrX:107,917,536
INFO 2026-06-04 22:09:46 MarkDuplicates Tracking 15975 as yet unmatched pairs. 10468 records in RAM.
INFO 2026-06-04 22:09:49 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:25:04s. Time for last 1,000,000: 2s. Last read position: chrX:118,826,304
INFO 2026-06-04 22:09:49 MarkDuplicates Tracking 17940 as yet unmatched pairs. 12433 records in RAM.
INFO 2026-06-04 22:09:51 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:25:06s. Time for last 1,000,000: 2s. Last read position: chrX:129,488,950
INFO 2026-06-04 22:09:51 MarkDuplicates Tracking 12520 as yet unmatched pairs. 7013 records in RAM.
INFO 2026-06-04 22:09:55 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:25:10s. Time for last 1,000,000: 3s. Last read position: chrX:137,012,288
INFO 2026-06-04 22:09:55 MarkDuplicates Tracking 10597 as yet unmatched pairs. 5090 records in RAM.
INFO 2026-06-04 22:09:57 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 2s. Last read position: chrX:153,956,351
INFO 2026-06-04 22:09:57 MarkDuplicates Tracking 9255 as yet unmatched pairs. 3748 records in RAM.
INFO 2026-06-04 22:10:00 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:25:15s. Time for last 1,000,000: 2s. Last read position: chrX:154,399,343
INFO 2026-06-04 22:10:00 MarkDuplicates Tracking 11864 as yet unmatched pairs. 6357 records in RAM.
INFO 2026-06-04 22:10:02 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:25:17s. Time for last 1,000,000: 2s. Last read position: GL000220.1:114,089
INFO 2026-06-04 22:10:02 MarkDuplicates Tracking 5330 as yet unmatched pairs. 2511 records in RAM.
INFO 2026-06-04 22:10:04 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:25:19s. Time for last 1,000,000: 2s. Last read position: GL000220.1:158,135
INFO 2026-06-04 22:10:04 MarkDuplicates Tracking 3011 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-04 22:10:06 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:25:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,039
INFO 2026-06-04 22:10:06 MarkDuplicates Tracking 1877 as yet unmatched pairs. 1830 records in RAM.
INFO 2026-06-04 22:10:08 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:25:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,488
INFO 2026-06-04 22:10:08 MarkDuplicates Tracking 63 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-04 22:10:08 MarkDuplicates Read 629369170 records. 0 pairs never matched.
INFO 2026-06-04 22:11:10 MarkDuplicates After buildSortedReadEndLists freeMemory: 58251446800; totalMemory: 83214991360; maxMemory: 127137742848
INFO 2026-06-04 22:11:10 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-04 22:11:19 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-04 22:12:09 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-04 22:12:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,099
INFO 2026-06-04 22:12:09 OpticalDuplicateFinder Large duplicate set. size = 1342
INFO 2026-06-04 22:12:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,103
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,718
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,279
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,015
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder Large duplicate set. size = 1587
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,647
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-04 22:12:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,432
INFO 2026-06-04 22:12:12 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-04 22:12:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,976
INFO 2026-06-04 22:12:12 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-04 22:12:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,747
INFO 2026-06-04 22:12:13 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-04 22:12:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,032
INFO 2026-06-04 22:12:13 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-04 22:12:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,200
INFO 2026-06-04 22:12:25 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-04 22:12:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,283
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,975
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1283
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,363
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,778
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1558
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,308
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1799
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,479
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1609
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,018
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1674
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,302
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,376
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,256
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,950
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,592
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,608
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1693
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,299
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1927
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,217
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 3344
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,419
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,509
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,371
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 3840
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,297
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,276
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,993
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1503
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,159
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-04 22:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,323
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1534
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,155
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,306
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,579
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1508
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,492
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1437
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,239
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1392
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,076
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,670
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,645
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1382
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,519
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,867
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,141
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,758
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,173
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,919
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-04 22:12:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,377
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,050
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,588
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,525
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,475
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,397
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-04 22:12:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,743
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,356
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,351
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,005
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,731
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1341
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,018
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,126
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,121
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 2935
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,052
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,018
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-04 22:12:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,215
INFO 2026-06-04 22:12:32 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-04 22:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315
INFO 2026-06-04 22:12:32 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-04 22:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,993
INFO 2026-06-04 22:12:32 OpticalDuplicateFinder Large duplicate set. size = 1223
INFO 2026-06-04 22:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,414
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,230
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,182
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,776
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder Large duplicate set. size = 1836
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,027
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder Large duplicate set. size = 1450
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,027
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-04 22:12:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,478
INFO 2026-06-04 22:12:34 OpticalDuplicateFinder Large duplicate set. size = 1389
INFO 2026-06-04 22:12:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,355
INFO 2026-06-04 22:12:34 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-04 22:12:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,249
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1223
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,031
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,414
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1399
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,687
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,113
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1823
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,323
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,807
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-04 22:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,484
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,389
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,142
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,592
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder Large duplicate set. size = 1229
INFO 2026-06-04 22:12:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,736
INFO 2026-06-04 22:12:37 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-04 22:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,511
INFO 2026-06-04 22:12:37 OpticalDuplicateFinder Large duplicate set. size = 1526
INFO 2026-06-04 22:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,035
INFO 2026-06-04 22:12:37 OpticalDuplicateFinder Large duplicate set. size = 1423
INFO 2026-06-04 22:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,815
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,178
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder Large duplicate set. size = 2740
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,238
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,395
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,010
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder Large duplicate set. size = 1444
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,322
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-04 22:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,289
INFO 2026-06-04 22:13:37 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-04 22:13:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,331
INFO 2026-06-04 22:13:41 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-04 22:13:42 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-04 22:15:21 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-04 22:15:25 MarkDuplicates After generateDuplicateIndexes freeMemory: 203908712; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-04 22:15:25 MarkDuplicates Marking 317268645 records as duplicates.
INFO 2026-06-04 22:15:25 MarkDuplicates Found 14828436 optical duplicate clusters.
INFO 2026-06-04 22:15:25 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-04 22:16:08 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:42s. Time for last 10,000,000: 42s. Last read position: chr1:21,887,260
INFO 2026-06-04 22:16:47 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 39s. Last read position: chr1:45,005,862
INFO 2026-06-04 22:17:25 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 37s. Last read position: chr1:119,915,797
INFO 2026-06-04 22:18:03 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 38s. Last read position: chr1:155,169,461
INFO 2026-06-04 22:18:42 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 38s. Last read position: chr1:203,851,096
INFO 2026-06-04 22:19:22 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 39s. Last read position: chr2:20,204,102
INFO 2026-06-04 22:19:59 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 37s. Last read position: chr2:61,348,401
INFO 2026-06-04 22:20:37 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 37s. Last read position: chr2:113,217,456
INFO 2026-06-04 22:21:13 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:05:48s. Time for last 10,000,000: 36s. Last read position: chr2:179,955,032
INFO 2026-06-04 22:21:49 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 36s. Last read position: chr2:215,386,774
INFO 2026-06-04 22:22:27 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 37s. Last read position: chr2:229,815,175
INFO 2026-06-04 22:23:04 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 37s. Last read position: chr3:46,860,711
INFO 2026-06-04 22:23:42 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 37s. Last read position: chr3:107,791,290
INFO 2026-06-04 22:24:22 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 40s. Last read position: chr3:186,785,074
INFO 2026-06-04 22:25:03 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 41s. Last read position: chr4:57,025,444
INFO 2026-06-04 22:25:41 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 38s. Last read position: chr4:182,914,943
INFO 2026-06-04 22:26:25 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:10:59s. Time for last 10,000,000: 43s. Last read position: chr5:103,028,975
INFO 2026-06-04 22:27:07 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:11:42s. Time for last 10,000,000: 42s. Last read position: chr5:151,117,148
INFO 2026-06-04 22:27:45 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 37s. Last read position: chr6:26,156,943
INFO 2026-06-04 22:28:18 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:12:53s. Time for last 10,000,000: 32s. Last read position: chr6:37,022,292
INFO 2026-06-04 22:28:53 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:13:28s. Time for last 10,000,000: 35s. Last read position: chr6:136,613,220
INFO 2026-06-04 22:29:29 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 35s. Last read position: chr7:18,240,732
INFO 2026-06-04 22:30:07 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 38s. Last read position: chr7:92,097,203
INFO 2026-06-04 22:30:45 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:15:20s. Time for last 10,000,000: 38s. Last read position: chr7:138,554,823
INFO 2026-06-04 22:31:24 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 38s. Last read position: chr8:27,604,291
INFO 2026-06-04 22:32:04 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 40s. Last read position: chr8:122,951,776
INFO 2026-06-04 22:32:40 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:17:15s. Time for last 10,000,000: 35s. Last read position: chr8:132,888,333
INFO 2026-06-04 22:33:12 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:17:47s. Time for last 10,000,000: 31s. Last read position: chr8:132,967,827
INFO 2026-06-04 22:33:44 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:18:18s. Time for last 10,000,000: 31s. Last read position: chr8:143,916,338
INFO 2026-06-04 22:34:14 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:18:49s. Time for last 10,000,000: 30s. Last read position: chr9:84,811,993
INFO 2026-06-04 22:34:37 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:19:11s. Time for last 10,000,000: 22s. Last read position: chr9:129,022,353
INFO 2026-06-04 22:35:01 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:19:36s. Time for last 10,000,000: 24s. Last read position: chr10:32,018,140
INFO 2026-06-04 22:35:22 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:19:56s. Time for last 10,000,000: 20s. Last read position: chr10:97,381,757
INFO 2026-06-04 22:35:40 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:20:15s. Time for last 10,000,000: 18s. Last read position: chr11:9,858,248
INFO 2026-06-04 22:35:57 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:20:32s. Time for last 10,000,000: 17s. Last read position: chr11:63,974,666
INFO 2026-06-04 22:36:15 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:20:50s. Time for last 10,000,000: 17s. Last read position: chr11:78,250,158
INFO 2026-06-04 22:36:33 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:21:08s. Time for last 10,000,000: 18s. Last read position: chr12:6,384,612
INFO 2026-06-04 22:36:51 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:21:26s. Time for last 10,000,000: 17s. Last read position: chr12:51,919,078
INFO 2026-06-04 22:37:08 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:21:43s. Time for last 10,000,000: 17s. Last read position: chr12:76,060,186
INFO 2026-06-04 22:37:26 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:22:01s. Time for last 10,000,000: 17s. Last read position: chr13:19,824,483
INFO 2026-06-04 22:37:44 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:22:19s. Time for last 10,000,000: 17s. Last read position: chr14:21,427,966
INFO 2026-06-04 22:38:02 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:22:36s. Time for last 10,000,000: 17s. Last read position: chr14:74,507,199
INFO 2026-06-04 22:38:19 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:22:54s. Time for last 10,000,000: 17s. Last read position: chr15:34,381,803
INFO 2026-06-04 22:38:37 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:23:12s. Time for last 10,000,000: 17s. Last read position: chr15:64,674,764
INFO 2026-06-04 22:38:55 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:23:30s. Time for last 10,000,000: 17s. Last read position: chr16:1,534,499
INFO 2026-06-04 22:39:13 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:23:47s. Time for last 10,000,000: 17s. Last read position: chr16:18,571,278
INFO 2026-06-04 22:39:31 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:24:05s. Time for last 10,000,000: 17s. Last read position: chr16:31,191,409
INFO 2026-06-04 22:39:48 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:24:23s. Time for last 10,000,000: 17s. Last read position: chr16:89,281,540
INFO 2026-06-04 22:40:06 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:24:41s. Time for last 10,000,000: 17s. Last read position: chr17:18,184,484
INFO 2026-06-04 22:40:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:24:58s. Time for last 10,000,000: 17s. Last read position: chr17:43,513,457
INFO 2026-06-04 22:40:42 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:25:16s. Time for last 10,000,000: 17s. Last read position: chr17:59,666,903
INFO 2026-06-04 22:41:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:25:40s. Time for last 10,000,000: 23s. Last read position: chr17:81,889,293
INFO 2026-06-04 22:41:24 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:25:59s. Time for last 10,000,000: 19s. Last read position: chr19:2,109,908
INFO 2026-06-04 22:41:42 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:26:16s. Time for last 10,000,000: 17s. Last read position: chr19:14,150,493
INFO 2026-06-04 22:41:59 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:26:34s. Time for last 10,000,000: 17s. Last read position: chr19:39,407,946
INFO 2026-06-04 22:42:17 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:26:52s. Time for last 10,000,000: 17s. Last read position: chr19:45,804,554
INFO 2026-06-04 22:42:35 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:27:09s. Time for last 10,000,000: 17s. Last read position: chr20:3,035,830
INFO 2026-06-04 22:42:52 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:27:27s. Time for last 10,000,000: 17s. Last read position: chr20:53,253,608
INFO 2026-06-04 22:43:09 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:27:44s. Time for last 10,000,000: 16s. Last read position: chr21:36,156,920
INFO 2026-06-04 22:43:27 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:28:01s. Time for last 10,000,000: 17s. Last read position: chr22:32,396,237
INFO 2026-06-04 22:43:45 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:28:19s. Time for last 10,000,000: 17s. Last read position: chrX:18,943,781
INFO 2026-06-04 22:44:02 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:28:37s. Time for last 10,000,000: 17s. Last read position: chrX:107,917,536
INFO 2026-06-04 22:44:20 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:28:54s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-04 22:44:26 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-04 22:44:26 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-04 22:44:26 MarkDuplicates Getting Memory Stats.
INFO 2026-06-04 22:44:26 MarkDuplicates Before output close freeMemory: 203844400; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-04 22:44:26 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-04 22:44:26 MarkDuplicates After output close freeMemory: 104104552; totalMemory: 134217728; maxMemory: 127137742848
[Thu Jun 04 22:44:26 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 59.74 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory