Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/7e01f0e6c2c4075dfe2d829aab73b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/6a5b578d6d07d3d016d2b70d2af16e/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/7e01f0e6c2c4075dfe2d829aab73b0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/6a5b578d6d07d3d016d2b70d2af16e/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory