Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/8fd7106cf7e20f5814371d1d6cdcd1/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ff34ed3def0c567037fe59a6998ba0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ff34ed3def0c567037fe59a6998ba0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/42fc06852d2ba0b299a3767fdc66df/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 376190104
[W::hts_idx_load3] The index file is older than the data file: 659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	376190104
Known Splicing Events:	372373296
Partial Novel Splicing Events:	1539584
Novel Splicing Events:	2154749
Filtered Splicing Events:	122475

Total splicing  Junctions:	689409
Known Splicing Junctions:	291126
Partial Novel Splicing Junctions:	191847
Novel Splicing Junctions:	206436

===================================================================
Create BED file ...
Create Interact file ...