Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/8e9c3b82183a03d8bd8124bc809879/FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/491184eeea973d17a2b962f9fa36cc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/491184eeea973d17a2b962f9fa36cc/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory