File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/a19fbe1619d3989613918e4a9831d1/.command.log
Size
9.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bTq-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/f692ce582032cc07d2b0adf6941b73/659_bTq-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/a19fbe1619d3989613918e4a9831d1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/a19fbe1619d3989613918e4a9831d1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/9d86f7df0ee971b71de555b4f1f388/659_bTq-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/42 [00:00<?, ?it/s]BIRC6--LINC01320
starfusion
arriba
PTPRK--RSPO3
starfusion
arriba
WASH3P--FOCAD
starfusion
arriba
BCL7C--NBEA
starfusion
arriba
LINC02609--GABBR2
starfusion
arriba
NR6A1--PSMB7
starfusion
AC138409.2--NAIP
starfusion
MIR4713HG--GLDN
starfusion
PMS2P6--CCDC146
starfusion
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PTPRK--AL356534.1
arriba
SAMD13--NFU1P2
arriba
SAMD13--LINC01776
arriba
TVP23C--CDRT4
arriba
CDH13--HS3ST4
arriba
CDH13--AC009158.1
arriba
TTLL11--TTLL11
arriba
MB21D2--TPRG1
arriba
RFC3--FNDC3A
arriba
AL669831.4--SEPTIN14
arriba
TTLL11--AL353742.1
arriba
TTLL11--AL669983.1
arriba
AC015911.9--SLFN12L
arriba
ZMAT3--MECOM
arriba
RFC3--MLNR
arriba
AL137000.1--NBEA
arriba
CDADC1--NBEA
arriba
CRYZL2P--SEC16B
arriba
KLRC4--KLRK1
arriba
DDX55--MIR3908
arriba
DDX55--TMED2-DT
arriba
MECOM--CACNA1B
arriba
MB21D2--TP63
arriba

Processing BIRC6--LINC01320:   0%|          | 0/42 [00:00<?, ?it/s]
Processing BIRC6--LINC01320:   2%|▏         | 1/42 [00:00<00:04,  9.20it/s]
Processing PTPRK--RSPO3:   2%|▏         | 1/42 [00:00<00:04,  9.20it/s]    
Processing PTPRK--RSPO3:   5%|▍         | 2/42 [00:00<00:04,  9.45it/s]
Processing WASH3P--FOCAD:   5%|▍         | 2/42 [00:00<00:04,  9.45it/s]
Processing WASH3P--FOCAD:   7%|▋         | 3/42 [00:00<00:04,  9.54it/s]
Processing BCL7C--NBEA:   7%|▋         | 3/42 [00:00<00:04,  9.54it/s]  
Processing BCL7C--NBEA:  10%|▉         | 4/42 [00:00<00:03,  9.58it/s]
Processing LINC02609--GABBR2:  10%|▉         | 4/42 [00:00<00:03,  9.58it/s]
Processing LINC02609--GABBR2:  12%|█▏        | 5/42 [00:00<00:03,  9.60it/s]
Processing NR6A1--PSMB7:  12%|█▏        | 5/42 [00:00<00:03,  9.60it/s]     
Processing NR6A1--PSMB7:  14%|█▍        | 6/42 [00:00<00:03,  9.61it/s]
Processing AC138409.2--NAIP:  14%|█▍        | 6/42 [00:00<00:03,  9.61it/s]
Processing AC138409.2--NAIP:  17%|█▋        | 7/42 [00:00<00:03,  9.62it/s]
Processing MIR4713HG--GLDN:  17%|█▋        | 7/42 [00:00<00:03,  9.62it/s] 
Processing MIR4713HG--GLDN:  19%|█▉        | 8/42 [00:00<00:03,  9.63it/s]
Processing PMS2P6--CCDC146:  19%|█▉        | 8/42 [00:00<00:03,  9.63it/s]
Processing PMS2P6--CCDC146:  21%|██▏       | 9/42 [00:00<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGC4:  21%|██▏       | 9/42 [00:00<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGC4:  24%|██▍       | 10/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  24%|██▍       | 10/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  26%|██▌       | 11/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  26%|██▌       | 11/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  29%|██▊       | 12/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  29%|██▊       | 12/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  31%|███       | 13/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  31%|███       | 13/42 [00:01<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  33%|███▎      | 14/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  33%|███▎      | 14/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  36%|███▌      | 15/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  36%|███▌      | 15/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 16/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  38%|███▊      | 16/42 [00:01<00:02,  9.64it/s] 
Processing PCDHGB2--PCDHGA9:  40%|████      | 17/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  40%|████      | 17/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  43%|████▎     | 18/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  43%|████▎     | 18/42 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  45%|████▌     | 19/42 [00:01<00:02,  9.64it/s]
Processing PTPRK--AL356534.1:  45%|████▌     | 19/42 [00:01<00:02,  9.64it/s]
Processing PTPRK--AL356534.1:  48%|████▊     | 20/42 [00:02<00:02,  9.64it/s]
Processing SAMD13--NFU1P2:  48%|████▊     | 20/42 [00:02<00:02,  9.64it/s]   
Processing SAMD13--NFU1P2:  50%|█████     | 21/42 [00:02<00:02,  9.64it/s]
Processing SAMD13--LINC01776:  50%|█████     | 21/42 [00:02<00:02,  9.64it/s]
Processing SAMD13--LINC01776:  52%|█████▏    | 22/42 [00:02<00:02,  9.64it/s]
Processing TVP23C--CDRT4:  52%|█████▏    | 22/42 [00:02<00:02,  9.64it/s]    
Processing TVP23C--CDRT4:  55%|█████▍    | 23/42 [00:02<00:01,  9.64it/s]
Processing CDH13--HS3ST4:  55%|█████▍    | 23/42 [00:02<00:01,  9.64it/s]
Processing CDH13--HS3ST4:  57%|█████▋    | 24/42 [00:02<00:01,  9.64it/s]
Processing CDH13--AC009158.1:  57%|█████▋    | 24/42 [00:02<00:01,  9.64it/s]
Processing CDH13--AC009158.1:  60%|█████▉    | 25/42 [00:02<00:01,  9.64it/s]
Processing TTLL11--TTLL11:  60%|█████▉    | 25/42 [00:02<00:01,  9.64it/s]   
Processing TTLL11--TTLL11:  62%|██████▏   | 26/42 [00:02<00:01,  9.64it/s]
Processing MB21D2--TPRG1:  62%|██████▏   | 26/42 [00:02<00:01,  9.64it/s] 
Processing MB21D2--TPRG1:  64%|██████▍   | 27/42 [00:02<00:01,  9.64it/s]
Processing RFC3--FNDC3A:  64%|██████▍   | 27/42 [00:02<00:01,  9.64it/s] 
Processing RFC3--FNDC3A:  67%|██████▋   | 28/42 [00:02<00:01,  9.65it/s]
Processing AL669831.4--SEPTIN14:  67%|██████▋   | 28/42 [00:02<00:01,  9.65it/s]
Processing AL669831.4--SEPTIN14:  69%|██████▉   | 29/42 [00:03<00:01,  9.64it/s]
Processing TTLL11--AL353742.1:  69%|██████▉   | 29/42 [00:03<00:01,  9.64it/s]  
Processing TTLL11--AL353742.1:  71%|███████▏  | 30/42 [00:03<00:01,  9.64it/s]
Processing TTLL11--AL669983.1:  71%|███████▏  | 30/42 [00:03<00:01,  9.64it/s]
Processing TTLL11--AL669983.1:  74%|███████▍  | 31/42 [00:03<00:01,  9.64it/s]
Processing AC015911.9--SLFN12L:  74%|███████▍  | 31/42 [00:03<00:01,  9.64it/s]
Processing AC015911.9--SLFN12L:  76%|███████▌  | 32/42 [00:03<00:01,  9.64it/s]
Processing ZMAT3--MECOM:  76%|███████▌  | 32/42 [00:03<00:01,  9.64it/s]       
Processing ZMAT3--MECOM:  79%|███████▊  | 33/42 [00:03<00:00,  9.64it/s]
Processing RFC3--MLNR:  79%|███████▊  | 33/42 [00:03<00:00,  9.64it/s]  
Processing RFC3--MLNR:  81%|████████  | 34/42 [00:03<00:00,  9.65it/s]
Processing AL137000.1--NBEA:  81%|████████  | 34/42 [00:03<00:00,  9.65it/s]
Processing AL137000.1--NBEA:  83%|████████▎ | 35/42 [00:03<00:00,  9.65it/s]
Processing CDADC1--NBEA:  83%|████████▎ | 35/42 [00:03<00:00,  9.65it/s]    
Processing CDADC1--NBEA:  86%|████████▌ | 36/42 [00:03<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  86%|████████▌ | 36/42 [00:03<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  88%|████████▊ | 37/42 [00:03<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  88%|████████▊ | 37/42 [00:03<00:00,  9.64it/s]   
Processing KLRC4--KLRK1:  90%|█████████ | 38/42 [00:03<00:00,  9.65it/s]
Processing DDX55--MIR3908:  90%|█████████ | 38/42 [00:03<00:00,  9.65it/s]
Processing DDX55--MIR3908:  93%|█████████▎| 39/42 [00:04<00:00,  9.65it/s]
Processing DDX55--TMED2-DT:  93%|█████████▎| 39/42 [00:04<00:00,  9.65it/s]
Processing DDX55--TMED2-DT:  95%|█████████▌| 40/42 [00:04<00:00,  9.65it/s]
Processing MECOM--CACNA1B:  95%|█████████▌| 40/42 [00:04<00:00,  9.65it/s] 
Processing MECOM--CACNA1B:  98%|█████████▊| 41/42 [00:04<00:00,  9.65it/s]
Processing MB21D2--TP63:  98%|█████████▊| 41/42 [00:04<00:00,  9.65it/s]  
Processing MB21D2--TP63: 100%|██████████| 42/42 [00:04<00:00,  9.65it/s]
Processing MB21D2--TP63: 100%|██████████| 42/42 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory