Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/3e0be0df34b7916fa8fd5096bdb7ca/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f455acc5bf001725c762937724e49c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/8d52a696f2d6eb77e90f5554a244b2/659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f455acc5bf001725c762937724e49c/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bMa-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1