Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/e6e99f1286b77499fe7dbee291019a/659_eu1-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/bac17a3cdcac1df8964b7c702eb535/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/bac17a3cdcac1df8964b7c702eb535/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory