Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/77bf0235ff4fc78c05f4c7e0a7bdad/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/c7becfc6f3dbfaf793679593a7ff2f/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/77bf0235ff4fc78c05f4c7e0a7bdad/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/2c4e95e4c628026a246b364178c64b/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1