Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/51d610a9207c11f9afaa52801e9fae/659_buD-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/fe15e25db75890095a95ae79d806d7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/fe15e25db75890095a95ae79d806d7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/c5f2af7ab4a1ff82bd8aa178f95513/659_buD-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory