Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/6c934580055f134ae3e55325065c18/659_dKM-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/18cfd39e79fbf7a4f3b97df65b9195/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/18cfd39e79fbf7a4f3b97df65b9195/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory