Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/329bda2dd666f97f279ce8cc1bc6e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/8c9ce0edb486b192ed681959994478/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/1d6f9762d21fa2c8891905da4de4a5/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/329bda2dd666f97f279ce8cc1bc6e3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
KIF5B--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
PTPN2--NPIPB12
starfusion
CCDC198--NPIPB12
starfusion
TAF4--AC114498.1
starfusion
arriba
GUSBP13--NAIP
starfusion
STX16--NPEPL1
starfusion
arriba
RPSAP52--HMGA2
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
ABCC4--RNY4P27
arriba
ABCC4--MEMO1P5
arriba
NOLC1--GBF1
arriba
AC015911.9--SLFN12L
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba
GLI3--AF246928.1
arriba
GLI3--AJ009632.2
arriba
RITA1--GLT8D2
arriba
TLK2P1--AC110079.1
arriba
TLK2--FAM157A
arriba
GTF2A1L--STON1-GTF2A1L
arriba

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Processing KIF5B--RET:   0%|          | 0/31 [00:00<?, ?it/s]
Processing KIF5B--RET:   3%|▎         | 1/31 [00:00<00:03,  9.22it/s]
Processing TLK2--AC240565.1:   3%|▎         | 1/31 [00:00<00:03,  9.22it/s]
Processing TLK2--AC240565.1:   6%|▋         | 2/31 [00:00<00:03,  9.46it/s]
Processing PTPN2--NPIPB12:   6%|▋         | 2/31 [00:00<00:03,  9.46it/s]  
Processing PTPN2--NPIPB12:  10%|▉         | 3/31 [00:00<00:02,  9.54it/s]
Processing CCDC198--NPIPB12:  10%|▉         | 3/31 [00:00<00:02,  9.54it/s]
Processing CCDC198--NPIPB12:  13%|█▎        | 4/31 [00:00<00:02,  9.58it/s]
Processing TAF4--AC114498.1:  13%|█▎        | 4/31 [00:00<00:02,  9.58it/s]
Processing TAF4--AC114498.1:  16%|█▌        | 5/31 [00:00<00:02,  9.60it/s]
Processing GUSBP13--NAIP:  16%|█▌        | 5/31 [00:00<00:02,  9.60it/s]   
Processing GUSBP13--NAIP:  19%|█▉        | 6/31 [00:00<00:02,  9.61it/s]
Processing STX16--NPEPL1:  19%|█▉        | 6/31 [00:00<00:02,  9.61it/s]
Processing STX16--NPEPL1:  23%|██▎       | 7/31 [00:00<00:02,  9.62it/s]
Processing RPSAP52--HMGA2:  23%|██▎       | 7/31 [00:00<00:02,  9.62it/s]
Processing RPSAP52--HMGA2:  26%|██▌       | 8/31 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  26%|██▌       | 8/31 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  29%|██▉       | 9/31 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  29%|██▉       | 9/31 [00:00<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  32%|███▏      | 10/31 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  32%|███▏      | 10/31 [00:01<00:02,  9.63it/s] 
Processing PCDHGB2--PCDHGC5:  35%|███▌      | 11/31 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  35%|███▌      | 11/31 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  39%|███▊      | 12/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  39%|███▊      | 12/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 13/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  42%|████▏     | 13/31 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGC4:  45%|████▌     | 14/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  45%|████▌     | 14/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  48%|████▊     | 15/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  48%|████▊     | 15/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  52%|█████▏    | 16/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  52%|█████▏    | 16/31 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGA9:  55%|█████▍    | 17/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  55%|█████▍    | 17/31 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  58%|█████▊    | 18/31 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  58%|█████▊    | 18/31 [00:01<00:01,  9.64it/s]   
Processing TVP23C--CDRT4:  61%|██████▏   | 19/31 [00:01<00:01,  9.64it/s]
Processing ABCC4--RNY4P27:  61%|██████▏   | 19/31 [00:01<00:01,  9.64it/s]
Processing ABCC4--RNY4P27:  65%|██████▍   | 20/31 [00:02<00:01,  9.64it/s]
Processing ABCC4--MEMO1P5:  65%|██████▍   | 20/31 [00:02<00:01,  9.64it/s]
Processing ABCC4--MEMO1P5:  68%|██████▊   | 21/31 [00:02<00:01,  9.64it/s]
Processing NOLC1--GBF1:  68%|██████▊   | 21/31 [00:02<00:01,  9.64it/s]   
Processing NOLC1--GBF1:  71%|███████   | 22/31 [00:02<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  71%|███████   | 22/31 [00:02<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  74%|███████▍  | 23/31 [00:02<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  74%|███████▍  | 23/31 [00:02<00:00,  9.64it/s]  
Processing AC092807.3--DDAH1:  77%|███████▋  | 24/31 [00:02<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  77%|███████▋  | 24/31 [00:02<00:00,  9.64it/s]     
Processing KLRC4--KLRK1:  81%|████████  | 25/31 [00:02<00:00,  9.64it/s]
Processing GLI3--AF246928.1:  81%|████████  | 25/31 [00:02<00:00,  9.64it/s]
Processing GLI3--AF246928.1:  84%|████████▍ | 26/31 [00:02<00:00,  9.64it/s]
Processing GLI3--AJ009632.2:  84%|████████▍ | 26/31 [00:02<00:00,  9.64it/s]
Processing GLI3--AJ009632.2:  87%|████████▋ | 27/31 [00:02<00:00,  9.64it/s]
Processing RITA1--GLT8D2:  87%|████████▋ | 27/31 [00:02<00:00,  9.64it/s]   
Processing RITA1--GLT8D2:  90%|█████████ | 28/31 [00:02<00:00,  9.64it/s]
Processing TLK2P1--AC110079.1:  90%|█████████ | 28/31 [00:02<00:00,  9.64it/s]
Processing TLK2P1--AC110079.1:  94%|█████████▎| 29/31 [00:03<00:00,  9.64it/s]
Processing TLK2--FAM157A:  94%|█████████▎| 29/31 [00:03<00:00,  9.64it/s]     
Processing TLK2--FAM157A:  97%|█████████▋| 30/31 [00:03<00:00,  9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L:  97%|█████████▋| 30/31 [00:03<00:00,  9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 31/31 [00:03<00:00,  9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 31/31 [00:03<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory