Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/d13ea3c9a2910f28c117732b9937d8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/d13ea3c9a2910f28c117732b9937d8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/4bd32511b20199e49b621aaea9a234/659_dRe-T1-TRNA-1_B23MHV2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/4bd32511b20199e49b621aaea9a234/659_dRe-T1-TRNA-1_B23MHV2LT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory