Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bUW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bUW-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bUW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
21:39:11.457 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Thu Jun 04 21:39:11 GMT 2026] MarkDuplicates --INPUT 659_bUW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bUW-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bUW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Jun 04 21:39:11 GMT 2026] Executing as ?@nf-760bb367da7518aa7331b8d051a014f5-ef02e-2shdm on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-04 21:39:11 MarkDuplicates Start of doWork freeMemory: 105132880; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-04 21:39:11 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-04 21:39:11 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-04 21:39:16 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,477,338
INFO 2026-06-04 21:39:16 MarkDuplicates Tracking 3403 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-04 21:39:19 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,186,665
INFO 2026-06-04 21:39:19 MarkDuplicates Tracking 7649 as yet unmatched pairs. 1513 records in RAM.
INFO 2026-06-04 21:39:21 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:8,874,858
INFO 2026-06-04 21:39:21 MarkDuplicates Tracking 9767 as yet unmatched pairs. 951 records in RAM.
INFO 2026-06-04 21:39:23 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:11,748,591
INFO 2026-06-04 21:39:23 MarkDuplicates Tracking 11833 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-04 21:39:25 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,934,685
INFO 2026-06-04 21:39:25 MarkDuplicates Tracking 14476 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-04 21:39:27 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:19,160,217
INFO 2026-06-04 21:39:27 MarkDuplicates Tracking 17252 as yet unmatched pairs. 441 records in RAM.
INFO 2026-06-04 21:39:30 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 3s. Last read position: chr1:20,661,219
INFO 2026-06-04 21:39:30 MarkDuplicates Tracking 20294 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-04 21:39:32 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,885,333
INFO 2026-06-04 21:39:32 MarkDuplicates Tracking 23217 as yet unmatched pairs. 793 records in RAM.
INFO 2026-06-04 21:39:34 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:23,695,825
INFO 2026-06-04 21:39:34 MarkDuplicates Tracking 25756 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-04 21:39:36 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:26,280,188
INFO 2026-06-04 21:39:36 MarkDuplicates Tracking 33197 as yet unmatched pairs. 5610 records in RAM.
INFO 2026-06-04 21:39:39 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 3s. Last read position: chr1:27,355,365
INFO 2026-06-04 21:39:39 MarkDuplicates Tracking 30571 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-04 21:39:41 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:31,005,998
INFO 2026-06-04 21:39:41 MarkDuplicates Tracking 33482 as yet unmatched pairs. 582 records in RAM.
INFO 2026-06-04 21:39:43 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,749
INFO 2026-06-04 21:39:43 MarkDuplicates Tracking 37014 as yet unmatched pairs. 1342 records in RAM.
INFO 2026-06-04 21:39:45 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:35,189,060
INFO 2026-06-04 21:39:45 MarkDuplicates Tracking 40184 as yet unmatched pairs. 1625 records in RAM.
INFO 2026-06-04 21:39:47 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:37,808,574
INFO 2026-06-04 21:39:47 MarkDuplicates Tracking 41322 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-04 21:39:49 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:40,260,959
INFO 2026-06-04 21:39:49 MarkDuplicates Tracking 44098 as yet unmatched pairs. 432 records in RAM.
INFO 2026-06-04 21:39:52 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:43,588,944
INFO 2026-06-04 21:39:52 MarkDuplicates Tracking 47589 as yet unmatched pairs. 1139 records in RAM.
INFO 2026-06-04 21:39:53 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:45,340,214
INFO 2026-06-04 21:39:53 MarkDuplicates Tracking 49565 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-04 21:39:56 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:46,678,569
INFO 2026-06-04 21:39:56 MarkDuplicates Tracking 52296 as yet unmatched pairs. 385 records in RAM.
INFO 2026-06-04 21:39:57 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:53,197,010
INFO 2026-06-04 21:39:57 MarkDuplicates Tracking 54882 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-04 21:39:59 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:61,088,616
INFO 2026-06-04 21:39:59 MarkDuplicates Tracking 58178 as yet unmatched pairs. 943 records in RAM.
INFO 2026-06-04 21:40:02 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:70,173,495
INFO 2026-06-04 21:40:02 MarkDuplicates Tracking 59999 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-04 21:40:04 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:87,339,535
INFO 2026-06-04 21:40:04 MarkDuplicates Tracking 63571 as yet unmatched pairs. 1535 records in RAM.
INFO 2026-06-04 21:40:05 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:94,498,962
INFO 2026-06-04 21:40:05 MarkDuplicates Tracking 65523 as yet unmatched pairs. 998 records in RAM.
INFO 2026-06-04 21:40:07 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:108,992,313
INFO 2026-06-04 21:40:07 MarkDuplicates Tracking 67316 as yet unmatched pairs. 510 records in RAM.
INFO 2026-06-04 21:40:09 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:111,444,053
INFO 2026-06-04 21:40:09 MarkDuplicates Tracking 70572 as yet unmatched pairs. 1130 records in RAM.
INFO 2026-06-04 21:40:12 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:113,957,256
INFO 2026-06-04 21:40:12 MarkDuplicates Tracking 72492 as yet unmatched pairs. 587 records in RAM.
INFO 2026-06-04 21:40:14 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:116,396,725
INFO 2026-06-04 21:40:14 MarkDuplicates Tracking 77438 as yet unmatched pairs. 3057 records in RAM.
INFO 2026-06-04 21:40:16 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:119,798,504
INFO 2026-06-04 21:40:16 MarkDuplicates Tracking 98247 as yet unmatched pairs. 21237 records in RAM.
INFO 2026-06-04 21:40:19 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:120,069,342
INFO 2026-06-04 21:40:19 MarkDuplicates Tracking 79769 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-04 21:40:20 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,728
INFO 2026-06-04 21:40:20 MarkDuplicates Tracking 81592 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-04 21:40:22 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,487,355
INFO 2026-06-04 21:40:22 MarkDuplicates Tracking 82508 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-04 21:40:23 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:149,929,165
INFO 2026-06-04 21:40:23 MarkDuplicates Tracking 84346 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-04 21:40:26 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:151,048,258
INFO 2026-06-04 21:40:26 MarkDuplicates Tracking 86812 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-04 21:40:28 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:153,534,817
INFO 2026-06-04 21:40:28 MarkDuplicates Tracking 94354 as yet unmatched pairs. 5161 records in RAM.
INFO 2026-06-04 21:40:31 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,677
INFO 2026-06-04 21:40:31 MarkDuplicates Tracking 103502 as yet unmatched pairs. 11765 records in RAM.
INFO 2026-06-04 21:40:33 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,990,528
INFO 2026-06-04 21:40:33 MarkDuplicates Tracking 94532 as yet unmatched pairs. 469 records in RAM.
INFO 2026-06-04 21:40:34 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:155,257,542
INFO 2026-06-04 21:40:34 MarkDuplicates Tracking 96918 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-04 21:40:36 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,209
INFO 2026-06-04 21:40:36 MarkDuplicates Tracking 102071 as yet unmatched pairs. 2962 records in RAM.
INFO 2026-06-04 21:40:40 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 4s. Last read position: chr1:156,311,174
INFO 2026-06-04 21:40:40 MarkDuplicates Tracking 102700 as yet unmatched pairs. 617 records in RAM.
INFO 2026-06-04 21:40:42 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:160,305,695
INFO 2026-06-04 21:40:42 MarkDuplicates Tracking 105986 as yet unmatched pairs. 1365 records in RAM.
INFO 2026-06-04 21:40:44 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:165,743,274
INFO 2026-06-04 21:40:44 MarkDuplicates Tracking 108554 as yet unmatched pairs. 1344 records in RAM.
INFO 2026-06-04 21:40:45 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:169,106,895
INFO 2026-06-04 21:40:45 MarkDuplicates Tracking 131865 as yet unmatched pairs. 21745 records in RAM.
INFO 2026-06-04 21:40:47 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,345
INFO 2026-06-04 21:40:47 MarkDuplicates Tracking 124906 as yet unmatched pairs. 12048 records in RAM.
INFO 2026-06-04 21:40:49 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:171,523,479
INFO 2026-06-04 21:40:49 MarkDuplicates Tracking 115828 as yet unmatched pairs. 682 records in RAM.
INFO 2026-06-04 21:40:52 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:179,851,306
INFO 2026-06-04 21:40:52 MarkDuplicates Tracking 117933 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-04 21:40:53 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:183,633,110
INFO 2026-06-04 21:40:53 MarkDuplicates Tracking 121140 as yet unmatched pairs. 850 records in RAM.
INFO 2026-06-04 21:40:55 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:186,932,811
INFO 2026-06-04 21:40:55 MarkDuplicates Tracking 122636 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-04 21:40:57 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:202,004,444
INFO 2026-06-04 21:40:57 MarkDuplicates Tracking 125585 as yet unmatched pairs. 504 records in RAM.
INFO 2026-06-04 21:40:59 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:204,257,722
INFO 2026-06-04 21:40:59 MarkDuplicates Tracking 128283 as yet unmatched pairs. 617 records in RAM.
INFO 2026-06-04 21:41:01 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:206,930,224
INFO 2026-06-04 21:41:01 MarkDuplicates Tracking 146910 as yet unmatched pairs. 16557 records in RAM.
INFO 2026-06-04 21:41:03 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:206,933,004
INFO 2026-06-04 21:41:03 MarkDuplicates Tracking 157268 as yet unmatched pairs. 24485 records in RAM.
INFO 2026-06-04 21:41:05 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:206,935,509
INFO 2026-06-04 21:41:05 MarkDuplicates Tracking 176937 as yet unmatched pairs. 41260 records in RAM.
INFO 2026-06-04 21:41:07 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:206,937,367
INFO 2026-06-04 21:41:07 MarkDuplicates Tracking 160081 as yet unmatched pairs. 21651 records in RAM.
INFO 2026-06-04 21:41:09 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,388
INFO 2026-06-04 21:41:09 MarkDuplicates Tracking 167002 as yet unmatched pairs. 25851 records in RAM.
INFO 2026-06-04 21:41:10 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:209,792,339
INFO 2026-06-04 21:41:10 MarkDuplicates Tracking 144661 as yet unmatched pairs. 835 records in RAM.
INFO 2026-06-04 21:41:12 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:222,654,427
INFO 2026-06-04 21:41:12 MarkDuplicates Tracking 146746 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-04 21:41:16 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 3s. Last read position: chr1:225,867,111
INFO 2026-06-04 21:41:16 MarkDuplicates Tracking 149922 as yet unmatched pairs. 1243 records in RAM.
INFO 2026-06-04 21:41:17 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:228,148,689
INFO 2026-06-04 21:41:17 MarkDuplicates Tracking 153742 as yet unmatched pairs. 2237 records in RAM.
INFO 2026-06-04 21:41:19 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr1:235,113,892
INFO 2026-06-04 21:41:19 MarkDuplicates Tracking 155378 as yet unmatched pairs. 838 records in RAM.
INFO 2026-06-04 21:41:21 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:244,864,050
INFO 2026-06-04 21:41:21 MarkDuplicates Tracking 158273 as yet unmatched pairs. 1255 records in RAM.
INFO 2026-06-04 21:41:24 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 3s. Last read position: chr2:9,490,184
INFO 2026-06-04 21:41:24 MarkDuplicates Tracking 159880 as yet unmatched pairs. 155863 records in RAM.
INFO 2026-06-04 21:41:26 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:17,731,081
INFO 2026-06-04 21:41:26 MarkDuplicates Tracking 162992 as yet unmatched pairs. 158881 records in RAM.
INFO 2026-06-04 21:41:28 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:24,872,639
INFO 2026-06-04 21:41:28 MarkDuplicates Tracking 165176 as yet unmatched pairs. 161002 records in RAM.
INFO 2026-06-04 21:41:30 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:27,384,883
INFO 2026-06-04 21:41:30 MarkDuplicates Tracking 168066 as yet unmatched pairs. 163809 records in RAM.
INFO 2026-06-04 21:41:32 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:32,448,843
INFO 2026-06-04 21:41:32 MarkDuplicates Tracking 171176 as yet unmatched pairs. 166851 records in RAM.
INFO 2026-06-04 21:41:36 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 4s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:41:36 MarkDuplicates Tracking 337331 as yet unmatched pairs. 154077 records in RAM.
INFO 2026-06-04 21:41:38 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:41:38 MarkDuplicates Tracking 970625 as yet unmatched pairs. 107802 records in RAM.
INFO 2026-06-04 21:41:40 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-04 21:41:40 MarkDuplicates Tracking 1323942 as yet unmatched pairs. 82770 records in RAM.
INFO 2026-06-04 21:41:41 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-04 21:41:41 MarkDuplicates Tracking 1332549 as yet unmatched pairs. 82101 records in RAM.
INFO 2026-06-04 21:41:42 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:37,120,062
INFO 2026-06-04 21:41:42 MarkDuplicates Tracking 1391926 as yet unmatched pairs. 77663 records in RAM.
INFO 2026-06-04 21:41:44 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:42,609,517
INFO 2026-06-04 21:41:44 MarkDuplicates Tracking 1389098 as yet unmatched pairs. 74774 records in RAM.
INFO 2026-06-04 21:41:46 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,747
INFO 2026-06-04 21:41:46 MarkDuplicates Tracking 1390423 as yet unmatched pairs. 76001 records in RAM.
INFO 2026-06-04 21:41:47 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:54,616,214
INFO 2026-06-04 21:41:47 MarkDuplicates Tracking 1385968 as yet unmatched pairs. 71496 records in RAM.
INFO 2026-06-04 21:41:50 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:55,049,860
INFO 2026-06-04 21:41:50 MarkDuplicates Tracking 1381985 as yet unmatched pairs. 67447 records in RAM.
INFO 2026-06-04 21:41:52 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:62,147,178
INFO 2026-06-04 21:41:52 MarkDuplicates Tracking 1378724 as yet unmatched pairs. 64110 records in RAM.
INFO 2026-06-04 21:41:54 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:69,514,592
INFO 2026-06-04 21:41:54 MarkDuplicates Tracking 1376566 as yet unmatched pairs. 61884 records in RAM.
INFO 2026-06-04 21:41:56 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:73,386,179
INFO 2026-06-04 21:41:56 MarkDuplicates Tracking 1374141 as yet unmatched pairs. 59392 records in RAM.
INFO 2026-06-04 21:41:58 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:77,519,755
INFO 2026-06-04 21:41:58 MarkDuplicates Tracking 1371315 as yet unmatched pairs. 56508 records in RAM.
INFO 2026-06-04 21:42:00 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:86,207,247
INFO 2026-06-04 21:42:00 MarkDuplicates Tracking 1369372 as yet unmatched pairs. 54497 records in RAM.
INFO 2026-06-04 21:42:01 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:95,889,972
INFO 2026-06-04 21:42:01 MarkDuplicates Tracking 1367921 as yet unmatched pairs. 52989 records in RAM.
INFO 2026-06-04 21:42:03 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:97,760,835
INFO 2026-06-04 21:42:03 MarkDuplicates Tracking 1364927 as yet unmatched pairs. 49940 records in RAM.
INFO 2026-06-04 21:42:05 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:105,361,134
INFO 2026-06-04 21:42:05 MarkDuplicates Tracking 1362793 as yet unmatched pairs. 47728 records in RAM.
INFO 2026-06-04 21:42:08 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:108,766,683
INFO 2026-06-04 21:42:08 MarkDuplicates Tracking 1360862 as yet unmatched pairs. 45724 records in RAM.
INFO 2026-06-04 21:42:10 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:110,667,676
INFO 2026-06-04 21:42:10 MarkDuplicates Tracking 1359131 as yet unmatched pairs. 43955 records in RAM.
INFO 2026-06-04 21:42:11 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:119,247,848
INFO 2026-06-04 21:42:11 MarkDuplicates Tracking 1357184 as yet unmatched pairs. 41951 records in RAM.
INFO 2026-06-04 21:42:13 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:130,140,245
INFO 2026-06-04 21:42:13 MarkDuplicates Tracking 1354606 as yet unmatched pairs. 39301 records in RAM.
INFO 2026-06-04 21:42:15 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:149,570,009
INFO 2026-06-04 21:42:15 MarkDuplicates Tracking 1353388 as yet unmatched pairs. 37963 records in RAM.
INFO 2026-06-04 21:42:17 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:161,231,540
INFO 2026-06-04 21:42:17 MarkDuplicates Tracking 1350441 as yet unmatched pairs. 34935 records in RAM.
INFO 2026-06-04 21:42:19 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:171,707,337
INFO 2026-06-04 21:42:19 MarkDuplicates Tracking 1348832 as yet unmatched pairs. 33243 records in RAM.
INFO 2026-06-04 21:42:21 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:175,929,972
INFO 2026-06-04 21:42:21 MarkDuplicates Tracking 1345570 as yet unmatched pairs. 29912 records in RAM.
INFO 2026-06-04 21:42:23 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:183,001,980
INFO 2026-06-04 21:42:23 MarkDuplicates Tracking 1343710 as yet unmatched pairs. 27988 records in RAM.
INFO 2026-06-04 21:42:25 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:190,683,758
INFO 2026-06-04 21:42:25 MarkDuplicates Tracking 1340879 as yet unmatched pairs. 25086 records in RAM.
INFO 2026-06-04 21:42:26 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:200,440,755
INFO 2026-06-04 21:42:26 MarkDuplicates Tracking 1338738 as yet unmatched pairs. 22890 records in RAM.
INFO 2026-06-04 21:42:28 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:206,004,528
INFO 2026-06-04 21:42:28 MarkDuplicates Tracking 1336315 as yet unmatched pairs. 20356 records in RAM.
INFO 2026-06-04 21:42:30 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,262
INFO 2026-06-04 21:42:30 MarkDuplicates Tracking 1335228 as yet unmatched pairs. 19219 records in RAM.
INFO 2026-06-04 21:42:32 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:218,266,451
INFO 2026-06-04 21:42:32 MarkDuplicates Tracking 1331933 as yet unmatched pairs. 15869 records in RAM.
INFO 2026-06-04 21:42:33 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:219,386,300
INFO 2026-06-04 21:42:33 MarkDuplicates Tracking 1329344 as yet unmatched pairs. 13224 records in RAM.
INFO 2026-06-04 21:42:35 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:229,830,778
INFO 2026-06-04 21:42:35 MarkDuplicates Tracking 1326696 as yet unmatched pairs. 10478 records in RAM.
INFO 2026-06-04 21:42:37 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:231,461,916
INFO 2026-06-04 21:42:37 MarkDuplicates Tracking 1325381 as yet unmatched pairs. 9105 records in RAM.
INFO 2026-06-04 21:42:38 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:237,353,340
INFO 2026-06-04 21:42:38 MarkDuplicates Tracking 1321275 as yet unmatched pairs. 4869 records in RAM.
INFO 2026-06-04 21:42:41 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr2:241,160,435
INFO 2026-06-04 21:42:41 MarkDuplicates Tracking 1318866 as yet unmatched pairs. 2363 records in RAM.
INFO 2026-06-04 21:42:43 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr3:9,371,452
INFO 2026-06-04 21:42:43 MarkDuplicates Tracking 1316241 as yet unmatched pairs. 73887 records in RAM.
INFO 2026-06-04 21:42:45 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:12,604,259
INFO 2026-06-04 21:42:45 MarkDuplicates Tracking 1314807 as yet unmatched pairs. 72378 records in RAM.
INFO 2026-06-04 21:42:47 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:25,628,854
INFO 2026-06-04 21:42:47 MarkDuplicates Tracking 1311756 as yet unmatched pairs. 69232 records in RAM.
INFO 2026-06-04 21:42:49 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:37,053,882
INFO 2026-06-04 21:42:49 MarkDuplicates Tracking 1308887 as yet unmatched pairs. 66291 records in RAM.
INFO 2026-06-04 21:42:50 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:40,458,721
INFO 2026-06-04 21:42:50 MarkDuplicates Tracking 1312859 as yet unmatched pairs. 70189 records in RAM.
INFO 2026-06-04 21:42:52 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:43,702,361
INFO 2026-06-04 21:42:52 MarkDuplicates Tracking 1304027 as yet unmatched pairs. 61311 records in RAM.
INFO 2026-06-04 21:42:54 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:47,121,527
INFO 2026-06-04 21:42:54 MarkDuplicates Tracking 1301768 as yet unmatched pairs. 58989 records in RAM.
INFO 2026-06-04 21:42:55 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:48,467,534
INFO 2026-06-04 21:42:55 MarkDuplicates Tracking 1298866 as yet unmatched pairs. 56017 records in RAM.
INFO 2026-06-04 21:42:57 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:49,102,428
INFO 2026-06-04 21:42:57 MarkDuplicates Tracking 1297929 as yet unmatched pairs. 55037 records in RAM.
INFO 2026-06-04 21:42:59 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:49,897,603
INFO 2026-06-04 21:42:59 MarkDuplicates Tracking 1293849 as yet unmatched pairs. 50878 records in RAM.
INFO 2026-06-04 21:43:00 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:51,993,785
INFO 2026-06-04 21:43:00 MarkDuplicates Tracking 1294633 as yet unmatched pairs. 51589 records in RAM.
INFO 2026-06-04 21:43:02 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:53,123,815
INFO 2026-06-04 21:43:02 MarkDuplicates Tracking 1288698 as yet unmatched pairs. 45606 records in RAM.
INFO 2026-06-04 21:43:04 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:58,109,677
INFO 2026-06-04 21:43:04 MarkDuplicates Tracking 1287464 as yet unmatched pairs. 44307 records in RAM.
INFO 2026-06-04 21:43:05 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:64,018,874
INFO 2026-06-04 21:43:05 MarkDuplicates Tracking 1283797 as yet unmatched pairs. 40574 records in RAM.
INFO 2026-06-04 21:43:08 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr3:97,967,451
INFO 2026-06-04 21:43:08 MarkDuplicates Tracking 1281543 as yet unmatched pairs. 38239 records in RAM.
INFO 2026-06-04 21:43:10 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:108,051,939
INFO 2026-06-04 21:43:10 MarkDuplicates Tracking 1280824 as yet unmatched pairs. 37463 records in RAM.
INFO 2026-06-04 21:43:12 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:121,693,885
INFO 2026-06-04 21:43:12 MarkDuplicates Tracking 1277456 as yet unmatched pairs. 33988 records in RAM.
INFO 2026-06-04 21:43:13 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:124,923,535
INFO 2026-06-04 21:43:13 MarkDuplicates Tracking 1277861 as yet unmatched pairs. 34347 records in RAM.
INFO 2026-06-04 21:43:15 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:128,726,225
INFO 2026-06-04 21:43:15 MarkDuplicates Tracking 1272103 as yet unmatched pairs. 28520 records in RAM.
INFO 2026-06-04 21:43:16 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:132,684,727
INFO 2026-06-04 21:43:16 MarkDuplicates Tracking 1269310 as yet unmatched pairs. 25664 records in RAM.
INFO 2026-06-04 21:43:18 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:142,187,709
INFO 2026-06-04 21:43:18 MarkDuplicates Tracking 1267291 as yet unmatched pairs. 23572 records in RAM.
INFO 2026-06-04 21:43:20 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:150,742,626
INFO 2026-06-04 21:43:20 MarkDuplicates Tracking 1264857 as yet unmatched pairs. 21072 records in RAM.
INFO 2026-06-04 21:43:22 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:169,102,095
INFO 2026-06-04 21:43:22 MarkDuplicates Tracking 1262998 as yet unmatched pairs. 19134 records in RAM.
INFO 2026-06-04 21:43:23 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:179,351,947
INFO 2026-06-04 21:43:23 MarkDuplicates Tracking 1260366 as yet unmatched pairs. 16396 records in RAM.
INFO 2026-06-04 21:43:25 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:184,317,406
INFO 2026-06-04 21:43:25 MarkDuplicates Tracking 1258766 as yet unmatched pairs. 14754 records in RAM.
INFO 2026-06-04 21:43:26 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:187,725,619
INFO 2026-06-04 21:43:26 MarkDuplicates Tracking 1255270 as yet unmatched pairs. 11169 records in RAM.
INFO 2026-06-04 21:43:28 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,618,967
INFO 2026-06-04 21:43:28 MarkDuplicates Tracking 1254940 as yet unmatched pairs. 10754 records in RAM.
INFO 2026-06-04 21:43:29 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:195,778,921
INFO 2026-06-04 21:43:29 MarkDuplicates Tracking 1254445 as yet unmatched pairs. 10233 records in RAM.
INFO 2026-06-04 21:43:31 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,578
INFO 2026-06-04 21:43:31 MarkDuplicates Tracking 1263148 as yet unmatched pairs. 18915 records in RAM.
INFO 2026-06-04 21:43:32 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,025
INFO 2026-06-04 21:43:32 MarkDuplicates Tracking 1260629 as yet unmatched pairs. 16371 records in RAM.
INFO 2026-06-04 21:43:34 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,170
INFO 2026-06-04 21:43:34 MarkDuplicates Tracking 1249299 as yet unmatched pairs. 5013 records in RAM.
INFO 2026-06-04 21:43:35 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:196,948,090
INFO 2026-06-04 21:43:35 MarkDuplicates Tracking 1245287 as yet unmatched pairs. 955 records in RAM.
INFO 2026-06-04 21:43:39 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 3s. Last read position: chr4:1,728,466
INFO 2026-06-04 21:43:39 MarkDuplicates Tracking 1242681 as yet unmatched pairs. 40420 records in RAM.
INFO 2026-06-04 21:43:41 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:4,274,687
INFO 2026-06-04 21:43:41 MarkDuplicates Tracking 1239756 as yet unmatched pairs. 37443 records in RAM.
INFO 2026-06-04 21:43:42 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:13,604,578
INFO 2026-06-04 21:43:42 MarkDuplicates Tracking 1237160 as yet unmatched pairs. 34780 records in RAM.
INFO 2026-06-04 21:43:44 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:37,830,036
INFO 2026-06-04 21:43:44 MarkDuplicates Tracking 1234651 as yet unmatched pairs. 32184 records in RAM.
INFO 2026-06-04 21:43:46 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:42,569,095
INFO 2026-06-04 21:43:46 MarkDuplicates Tracking 1232674 as yet unmatched pairs. 30128 records in RAM.
INFO 2026-06-04 21:43:47 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:55,892,707
INFO 2026-06-04 21:43:47 MarkDuplicates Tracking 1230171 as yet unmatched pairs. 27532 records in RAM.
INFO 2026-06-04 21:43:49 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:70,958,981
INFO 2026-06-04 21:43:49 MarkDuplicates Tracking 1227381 as yet unmatched pairs. 24679 records in RAM.
INFO 2026-06-04 21:43:51 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:76,144,447
INFO 2026-06-04 21:43:51 MarkDuplicates Tracking 1224805 as yet unmatched pairs. 22061 records in RAM.
INFO 2026-06-04 21:43:52 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:82,426,054
INFO 2026-06-04 21:43:52 MarkDuplicates Tracking 1223375 as yet unmatched pairs. 20553 records in RAM.
INFO 2026-06-04 21:43:54 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:88,747,776
INFO 2026-06-04 21:43:54 MarkDuplicates Tracking 1220126 as yet unmatched pairs. 17225 records in RAM.
INFO 2026-06-04 21:43:56 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:105,369,743
INFO 2026-06-04 21:43:56 MarkDuplicates Tracking 1219497 as yet unmatched pairs. 16507 records in RAM.
INFO 2026-06-04 21:43:58 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:119,030,257
INFO 2026-06-04 21:43:58 MarkDuplicates Tracking 1215656 as yet unmatched pairs. 12598 records in RAM.
INFO 2026-06-04 21:43:59 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:139,060,332
INFO 2026-06-04 21:43:59 MarkDuplicates Tracking 1213590 as yet unmatched pairs. 10473 records in RAM.
INFO 2026-06-04 21:44:01 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:150,683,566
INFO 2026-06-04 21:44:01 MarkDuplicates Tracking 1211482 as yet unmatched pairs. 8260 records in RAM.
INFO 2026-06-04 21:44:02 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:153,328,614
INFO 2026-06-04 21:44:02 MarkDuplicates Tracking 1209627 as yet unmatched pairs. 6341 records in RAM.
INFO 2026-06-04 21:44:04 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:182,891,419
INFO 2026-06-04 21:44:04 MarkDuplicates Tracking 1207051 as yet unmatched pairs. 3666 records in RAM.
INFO 2026-06-04 21:44:05 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:186,639,748
INFO 2026-06-04 21:44:05 MarkDuplicates Tracking 1205426 as yet unmatched pairs. 1988 records in RAM.
INFO 2026-06-04 21:44:08 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr5:6,605,216
INFO 2026-06-04 21:44:08 MarkDuplicates Tracking 1201913 as yet unmatched pairs. 61209 records in RAM.
INFO 2026-06-04 21:44:10 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:14,485,109
INFO 2026-06-04 21:44:10 MarkDuplicates Tracking 1199697 as yet unmatched pairs. 58942 records in RAM.
INFO 2026-06-04 21:44:13 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr5:36,181,752
INFO 2026-06-04 21:44:13 MarkDuplicates Tracking 1196912 as yet unmatched pairs. 56065 records in RAM.
INFO 2026-06-04 21:44:14 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:43,509,200
INFO 2026-06-04 21:44:14 MarkDuplicates Tracking 1194432 as yet unmatched pairs. 53540 records in RAM.
INFO 2026-06-04 21:44:16 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:65,018,258
INFO 2026-06-04 21:44:16 MarkDuplicates Tracking 1192141 as yet unmatched pairs. 51164 records in RAM.
INFO 2026-06-04 21:44:17 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:71,510,053
INFO 2026-06-04 21:44:17 MarkDuplicates Tracking 1190521 as yet unmatched pairs. 49482 records in RAM.
INFO 2026-06-04 21:44:19 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:75,399,367
INFO 2026-06-04 21:44:19 MarkDuplicates Tracking 1188236 as yet unmatched pairs. 47144 records in RAM.
INFO 2026-06-04 21:44:21 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,466
INFO 2026-06-04 21:44:21 MarkDuplicates Tracking 1192130 as yet unmatched pairs. 50981 records in RAM.
INFO 2026-06-04 21:44:22 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:96,750,587
INFO 2026-06-04 21:44:22 MarkDuplicates Tracking 1184781 as yet unmatched pairs. 43571 records in RAM.
INFO 2026-06-04 21:44:24 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:112,902,470
INFO 2026-06-04 21:44:24 MarkDuplicates Tracking 1181748 as yet unmatched pairs. 40470 records in RAM.
INFO 2026-06-04 21:44:26 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:128,112,886
INFO 2026-06-04 21:44:26 MarkDuplicates Tracking 1182573 as yet unmatched pairs. 41211 records in RAM.
INFO 2026-06-04 21:44:28 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:132,896,425
INFO 2026-06-04 21:44:28 MarkDuplicates Tracking 1176544 as yet unmatched pairs. 35118 records in RAM.
INFO 2026-06-04 21:44:29 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:136,044,067
INFO 2026-06-04 21:44:29 MarkDuplicates Tracking 1175206 as yet unmatched pairs. 33737 records in RAM.
INFO 2026-06-04 21:44:32 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:138,924,568
INFO 2026-06-04 21:44:32 MarkDuplicates Tracking 1173029 as yet unmatched pairs. 31488 records in RAM.
INFO 2026-06-04 21:44:34 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:140,677,667
INFO 2026-06-04 21:44:34 MarkDuplicates Tracking 1169193 as yet unmatched pairs. 27593 records in RAM.
INFO 2026-06-04 21:44:36 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:142,885,330
INFO 2026-06-04 21:44:36 MarkDuplicates Tracking 1167439 as yet unmatched pairs. 25799 records in RAM.
INFO 2026-06-04 21:44:37 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:150,205,431
INFO 2026-06-04 21:44:37 MarkDuplicates Tracking 1163959 as yet unmatched pairs. 22254 records in RAM.
INFO 2026-06-04 21:44:39 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,198
INFO 2026-06-04 21:44:39 MarkDuplicates Tracking 1168243 as yet unmatched pairs. 26501 records in RAM.
INFO 2026-06-04 21:44:41 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:154,799,890
INFO 2026-06-04 21:44:41 MarkDuplicates Tracking 1158756 as yet unmatched pairs. 16975 records in RAM.
INFO 2026-06-04 21:44:42 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:163,460,681
INFO 2026-06-04 21:44:42 MarkDuplicates Tracking 1156496 as yet unmatched pairs. 14653 records in RAM.
INFO 2026-06-04 21:44:44 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,789
INFO 2026-06-04 21:44:44 MarkDuplicates Tracking 1179281 as yet unmatched pairs. 37394 records in RAM.
INFO 2026-06-04 21:44:46 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:174,729,410
INFO 2026-06-04 21:44:46 MarkDuplicates Tracking 1151995 as yet unmatched pairs. 10072 records in RAM.
INFO 2026-06-04 21:44:47 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:177,511,759
INFO 2026-06-04 21:44:47 MarkDuplicates Tracking 1149519 as yet unmatched pairs. 7548 records in RAM.
INFO 2026-06-04 21:44:49 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:179,765,353
INFO 2026-06-04 21:44:49 MarkDuplicates Tracking 1147182 as yet unmatched pairs. 5160 records in RAM.
INFO 2026-06-04 21:44:50 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:180,569,308
INFO 2026-06-04 21:44:50 MarkDuplicates Tracking 1144335 as yet unmatched pairs. 2254 records in RAM.
INFO 2026-06-04 21:44:53 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr6:2,766,362
INFO 2026-06-04 21:44:53 MarkDuplicates Tracking 1141663 as yet unmatched pairs. 74126 records in RAM.
INFO 2026-06-04 21:44:54 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,622
INFO 2026-06-04 21:44:54 MarkDuplicates Tracking 1139890 as yet unmatched pairs. 72294 records in RAM.
INFO 2026-06-04 21:44:56 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:10,725,993
INFO 2026-06-04 21:44:56 MarkDuplicates Tracking 1137491 as yet unmatched pairs. 69854 records in RAM.
INFO 2026-06-04 21:44:58 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:21,595,335
INFO 2026-06-04 21:44:58 MarkDuplicates Tracking 1134484 as yet unmatched pairs. 66785 records in RAM.
INFO 2026-06-04 21:45:01 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:26,188,740
INFO 2026-06-04 21:45:01 MarkDuplicates Tracking 1131683 as yet unmatched pairs. 63939 records in RAM.
INFO 2026-06-04 21:45:02 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:27,147,258
INFO 2026-06-04 21:45:02 MarkDuplicates Tracking 1130353 as yet unmatched pairs. 62554 records in RAM.
INFO 2026-06-04 21:45:04 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:29,623,377
INFO 2026-06-04 21:45:04 MarkDuplicates Tracking 1126388 as yet unmatched pairs. 58557 records in RAM.
INFO 2026-06-04 21:45:05 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:30,603,811
INFO 2026-06-04 21:45:05 MarkDuplicates Tracking 1124124 as yet unmatched pairs. 56247 records in RAM.
INFO 2026-06-04 21:45:07 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,827
INFO 2026-06-04 21:45:07 MarkDuplicates Tracking 1123762 as yet unmatched pairs. 55844 records in RAM.
INFO 2026-06-04 21:45:09 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,666,148
INFO 2026-06-04 21:45:09 MarkDuplicates Tracking 1120531 as yet unmatched pairs. 52570 records in RAM.
INFO 2026-06-04 21:45:10 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,864,836
INFO 2026-06-04 21:45:10 MarkDuplicates Tracking 1121066 as yet unmatched pairs. 53064 records in RAM.
INFO 2026-06-04 21:45:12 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:32,439,921
INFO 2026-06-04 21:45:12 MarkDuplicates Tracking 1115285 as yet unmatched pairs. 47236 records in RAM.
INFO 2026-06-04 21:45:14 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:33,290,418
INFO 2026-06-04 21:45:14 MarkDuplicates Tracking 1111751 as yet unmatched pairs. 43669 records in RAM.
INFO 2026-06-04 21:45:15 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:34,417,464
INFO 2026-06-04 21:45:15 MarkDuplicates Tracking 1109155 as yet unmatched pairs. 41011 records in RAM.
INFO 2026-06-04 21:45:17 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:36,978,117
INFO 2026-06-04 21:45:17 MarkDuplicates Tracking 1107467 as yet unmatched pairs. 39259 records in RAM.
INFO 2026-06-04 21:45:18 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:43,066,477
INFO 2026-06-04 21:45:18 MarkDuplicates Tracking 1104355 as yet unmatched pairs. 36084 records in RAM.
INFO 2026-06-04 21:45:20 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,535
INFO 2026-06-04 21:45:20 MarkDuplicates Tracking 1103300 as yet unmatched pairs. 34976 records in RAM.
INFO 2026-06-04 21:45:21 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:56,497,437
INFO 2026-06-04 21:45:21 MarkDuplicates Tracking 1099073 as yet unmatched pairs. 30565 records in RAM.
INFO 2026-06-04 21:45:23 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:75,090,245
INFO 2026-06-04 21:45:23 MarkDuplicates Tracking 1097058 as yet unmatched pairs. 28450 records in RAM.
INFO 2026-06-04 21:45:25 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:84,089,776
INFO 2026-06-04 21:45:25 MarkDuplicates Tracking 1094367 as yet unmatched pairs. 25677 records in RAM.
INFO 2026-06-04 21:45:26 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:99,400,235
INFO 2026-06-04 21:45:26 MarkDuplicates Tracking 1092062 as yet unmatched pairs. 23306 records in RAM.
INFO 2026-06-04 21:45:28 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:108,212,154
INFO 2026-06-04 21:45:28 MarkDuplicates Tracking 1090289 as yet unmatched pairs. 21491 records in RAM.
INFO 2026-06-04 21:45:30 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:116,120,782
INFO 2026-06-04 21:45:30 MarkDuplicates Tracking 1087124 as yet unmatched pairs. 18262 records in RAM.
INFO 2026-06-04 21:45:31 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:130,858,208
INFO 2026-06-04 21:45:31 MarkDuplicates Tracking 1085841 as yet unmatched pairs. 16914 records in RAM.
INFO 2026-06-04 21:45:33 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:136,279,832
INFO 2026-06-04 21:45:33 MarkDuplicates Tracking 1082835 as yet unmatched pairs. 13875 records in RAM.
INFO 2026-06-04 21:45:35 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:142,405,691
INFO 2026-06-04 21:45:35 MarkDuplicates Tracking 1079826 as yet unmatched pairs. 10822 records in RAM.
INFO 2026-06-04 21:45:36 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:152,975,131
INFO 2026-06-04 21:45:36 MarkDuplicates Tracking 1077214 as yet unmatched pairs. 8148 records in RAM.
INFO 2026-06-04 21:45:38 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,813
INFO 2026-06-04 21:45:38 MarkDuplicates Tracking 1077354 as yet unmatched pairs. 8227 records in RAM.
INFO 2026-06-04 21:45:39 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:159,787,775
INFO 2026-06-04 21:45:39 MarkDuplicates Tracking 1073389 as yet unmatched pairs. 4238 records in RAM.
INFO 2026-06-04 21:45:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr6:170,535,386
INFO 2026-06-04 21:45:41 MarkDuplicates Tracking 1070291 as yet unmatched pairs. 1063 records in RAM.
INFO 2026-06-04 21:45:44 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr7:4,759,384
INFO 2026-06-04 21:45:44 MarkDuplicates Tracking 1066505 as yet unmatched pairs. 114809 records in RAM.
INFO 2026-06-04 21:45:46 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,088
INFO 2026-06-04 21:45:46 MarkDuplicates Tracking 1082031 as yet unmatched pairs. 130297 records in RAM.
INFO 2026-06-04 21:45:48 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:5,592,870
INFO 2026-06-04 21:45:48 MarkDuplicates Tracking 1060845 as yet unmatched pairs. 109051 records in RAM.
INFO 2026-06-04 21:45:50 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:16,689,841
INFO 2026-06-04 21:45:50 MarkDuplicates Tracking 1058890 as yet unmatched pairs. 107032 records in RAM.
INFO 2026-06-04 21:45:51 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:20,827,662
INFO 2026-06-04 21:45:51 MarkDuplicates Tracking 1056086 as yet unmatched pairs. 104192 records in RAM.
INFO 2026-06-04 21:45:53 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:30,654,686
INFO 2026-06-04 21:45:53 MarkDuplicates Tracking 1053626 as yet unmatched pairs. 101674 records in RAM.
INFO 2026-06-04 21:45:55 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:44,115,783
INFO 2026-06-04 21:45:55 MarkDuplicates Tracking 1051918 as yet unmatched pairs. 99883 records in RAM.
INFO 2026-06-04 21:45:56 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:55,160,154
INFO 2026-06-04 21:45:56 MarkDuplicates Tracking 1050025 as yet unmatched pairs. 97948 records in RAM.
INFO 2026-06-04 21:45:58 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:70,790,036
INFO 2026-06-04 21:45:58 MarkDuplicates Tracking 1046303 as yet unmatched pairs. 94176 records in RAM.
INFO 2026-06-04 21:45:59 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,752
INFO 2026-06-04 21:45:59 MarkDuplicates Tracking 1044513 as yet unmatched pairs. 92335 records in RAM.
INFO 2026-06-04 21:46:01 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:75,984,888
INFO 2026-06-04 21:46:01 MarkDuplicates Tracking 1042715 as yet unmatched pairs. 90503 records in RAM.
INFO 2026-06-04 21:46:03 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:87,349,158
INFO 2026-06-04 21:46:03 MarkDuplicates Tracking 1039955 as yet unmatched pairs. 87686 records in RAM.
INFO 2026-06-04 21:46:04 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:93,134,429
INFO 2026-06-04 21:46:04 MarkDuplicates Tracking 1037508 as yet unmatched pairs. 85214 records in RAM.
INFO 2026-06-04 21:46:06 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:99,185,078
INFO 2026-06-04 21:46:06 MarkDuplicates Tracking 1034894 as yet unmatched pairs. 82544 records in RAM.
INFO 2026-06-04 21:46:07 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,352,832
INFO 2026-06-04 21:46:07 MarkDuplicates Tracking 1032622 as yet unmatched pairs. 80231 records in RAM.
INFO 2026-06-04 21:46:09 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:100,957,492
INFO 2026-06-04 21:46:09 MarkDuplicates Tracking 1030254 as yet unmatched pairs. 77824 records in RAM.
INFO 2026-06-04 21:46:11 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,735
INFO 2026-06-04 21:46:11 MarkDuplicates Tracking 1036865 as yet unmatched pairs. 84401 records in RAM.
INFO 2026-06-04 21:46:12 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,376
INFO 2026-06-04 21:46:12 MarkDuplicates Tracking 1037704 as yet unmatched pairs. 85221 records in RAM.
INFO 2026-06-04 21:46:14 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,715
INFO 2026-06-04 21:46:14 MarkDuplicates Tracking 1035580 as yet unmatched pairs. 83076 records in RAM.
INFO 2026-06-04 21:46:15 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,944
INFO 2026-06-04 21:46:15 MarkDuplicates Tracking 1039515 as yet unmatched pairs. 87002 records in RAM.
INFO 2026-06-04 21:46:16 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,173
INFO 2026-06-04 21:46:16 MarkDuplicates Tracking 1032966 as yet unmatched pairs. 80452 records in RAM.
INFO 2026-06-04 21:46:17 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,598
INFO 2026-06-04 21:46:17 MarkDuplicates Tracking 1041436 as yet unmatched pairs. 88915 records in RAM.
INFO 2026-06-04 21:46:19 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,726
INFO 2026-06-04 21:46:19 MarkDuplicates Tracking 1040510 as yet unmatched pairs. 87986 records in RAM.
INFO 2026-06-04 21:46:20 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,907
INFO 2026-06-04 21:46:20 MarkDuplicates Tracking 1036265 as yet unmatched pairs. 83733 records in RAM.
INFO 2026-06-04 21:46:22 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,186
INFO 2026-06-04 21:46:22 MarkDuplicates Tracking 1031842 as yet unmatched pairs. 79309 records in RAM.
INFO 2026-06-04 21:46:23 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,656
INFO 2026-06-04 21:46:23 MarkDuplicates Tracking 1039706 as yet unmatched pairs. 87170 records in RAM.
INFO 2026-06-04 21:46:24 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,846
INFO 2026-06-04 21:46:24 MarkDuplicates Tracking 1038295 as yet unmatched pairs. 85759 records in RAM.
INFO 2026-06-04 21:46:26 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,008
INFO 2026-06-04 21:46:26 MarkDuplicates Tracking 1038263 as yet unmatched pairs. 85727 records in RAM.
INFO 2026-06-04 21:46:27 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,213
INFO 2026-06-04 21:46:27 MarkDuplicates Tracking 1040306 as yet unmatched pairs. 87770 records in RAM.
INFO 2026-06-04 21:46:28 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,557
INFO 2026-06-04 21:46:28 MarkDuplicates Tracking 1040699 as yet unmatched pairs. 88161 records in RAM.
INFO 2026-06-04 21:46:29 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,809
INFO 2026-06-04 21:46:29 MarkDuplicates Tracking 1037567 as yet unmatched pairs. 85024 records in RAM.
INFO 2026-06-04 21:46:30 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,138
INFO 2026-06-04 21:46:30 MarkDuplicates Tracking 1040087 as yet unmatched pairs. 87542 records in RAM.
INFO 2026-06-04 21:46:31 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,293
INFO 2026-06-04 21:46:31 MarkDuplicates Tracking 1046171 as yet unmatched pairs. 93626 records in RAM.
INFO 2026-06-04 21:46:32 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,388
INFO 2026-06-04 21:46:32 MarkDuplicates Tracking 1086840 as yet unmatched pairs. 134288 records in RAM.
INFO 2026-06-04 21:46:34 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,513
INFO 2026-06-04 21:46:34 MarkDuplicates Tracking 1038982 as yet unmatched pairs. 86401 records in RAM.
INFO 2026-06-04 21:46:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,785
INFO 2026-06-04 21:46:35 MarkDuplicates Tracking 1044303 as yet unmatched pairs. 91708 records in RAM.
INFO 2026-06-04 21:46:36 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,890
INFO 2026-06-04 21:46:36 MarkDuplicates Tracking 1116177 as yet unmatched pairs. 163576 records in RAM.
INFO 2026-06-04 21:46:38 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,020
INFO 2026-06-04 21:46:38 MarkDuplicates Tracking 1052332 as yet unmatched pairs. 99717 records in RAM.
INFO 2026-06-04 21:46:39 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,170
INFO 2026-06-04 21:46:39 MarkDuplicates Tracking 1064463 as yet unmatched pairs. 111834 records in RAM.
INFO 2026-06-04 21:46:42 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,399
INFO 2026-06-04 21:46:42 MarkDuplicates Tracking 1062553 as yet unmatched pairs. 109921 records in RAM.
INFO 2026-06-04 21:46:43 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,526
INFO 2026-06-04 21:46:43 MarkDuplicates Tracking 1073716 as yet unmatched pairs. 121055 records in RAM.
INFO 2026-06-04 21:46:45 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,702
INFO 2026-06-04 21:46:45 MarkDuplicates Tracking 1026840 as yet unmatched pairs. 74165 records in RAM.
INFO 2026-06-04 21:46:46 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,924
INFO 2026-06-04 21:46:46 MarkDuplicates Tracking 1081963 as yet unmatched pairs. 129287 records in RAM.
INFO 2026-06-04 21:46:47 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,080
INFO 2026-06-04 21:46:47 MarkDuplicates Tracking 1046025 as yet unmatched pairs. 93333 records in RAM.
INFO 2026-06-04 21:46:49 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,274
INFO 2026-06-04 21:46:49 MarkDuplicates Tracking 1028723 as yet unmatched pairs. 76020 records in RAM.
INFO 2026-06-04 21:46:50 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,407
INFO 2026-06-04 21:46:50 MarkDuplicates Tracking 1026671 as yet unmatched pairs. 73968 records in RAM.
INFO 2026-06-04 21:46:51 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,560
INFO 2026-06-04 21:46:51 MarkDuplicates Tracking 1041829 as yet unmatched pairs. 89126 records in RAM.
INFO 2026-06-04 21:46:52 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,677
INFO 2026-06-04 21:46:52 MarkDuplicates Tracking 1069032 as yet unmatched pairs. 116318 records in RAM.
INFO 2026-06-04 21:46:53 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,814
INFO 2026-06-04 21:46:53 MarkDuplicates Tracking 1030314 as yet unmatched pairs. 77587 records in RAM.
INFO 2026-06-04 21:46:54 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,943
INFO 2026-06-04 21:46:54 MarkDuplicates Tracking 1026484 as yet unmatched pairs. 73757 records in RAM.
INFO 2026-06-04 21:46:55 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,105
INFO 2026-06-04 21:46:55 MarkDuplicates Tracking 1041248 as yet unmatched pairs. 88521 records in RAM.
INFO 2026-06-04 21:46:57 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,449
INFO 2026-06-04 21:46:57 MarkDuplicates Tracking 1060316 as yet unmatched pairs. 107579 records in RAM.
INFO 2026-06-04 21:46:58 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,621
INFO 2026-06-04 21:46:58 MarkDuplicates Tracking 1081254 as yet unmatched pairs. 128489 records in RAM.
INFO 2026-06-04 21:46:59 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,817
INFO 2026-06-04 21:46:59 MarkDuplicates Tracking 1067716 as yet unmatched pairs. 114947 records in RAM.
INFO 2026-06-04 21:47:02 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr7:100,999,982
INFO 2026-06-04 21:47:02 MarkDuplicates Tracking 1055889 as yet unmatched pairs. 103096 records in RAM.
INFO 2026-06-04 21:47:03 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,179
INFO 2026-06-04 21:47:03 MarkDuplicates Tracking 1069711 as yet unmatched pairs. 116899 records in RAM.
INFO 2026-06-04 21:47:05 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,385
INFO 2026-06-04 21:47:05 MarkDuplicates Tracking 1069265 as yet unmatched pairs. 116439 records in RAM.
INFO 2026-06-04 21:47:06 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,517
INFO 2026-06-04 21:47:06 MarkDuplicates Tracking 1040714 as yet unmatched pairs. 87878 records in RAM.
INFO 2026-06-04 21:47:08 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,694
INFO 2026-06-04 21:47:08 MarkDuplicates Tracking 1067261 as yet unmatched pairs. 114411 records in RAM.
INFO 2026-06-04 21:47:09 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,851
INFO 2026-06-04 21:47:09 MarkDuplicates Tracking 1059487 as yet unmatched pairs. 106628 records in RAM.
INFO 2026-06-04 21:47:10 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,992
INFO 2026-06-04 21:47:10 MarkDuplicates Tracking 1048964 as yet unmatched pairs. 96093 records in RAM.
INFO 2026-06-04 21:47:12 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,227
INFO 2026-06-04 21:47:12 MarkDuplicates Tracking 1050317 as yet unmatched pairs. 97427 records in RAM.
INFO 2026-06-04 21:47:13 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,368
INFO 2026-06-04 21:47:13 MarkDuplicates Tracking 1037364 as yet unmatched pairs. 84459 records in RAM.
INFO 2026-06-04 21:47:14 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,512
INFO 2026-06-04 21:47:14 MarkDuplicates Tracking 1016092 as yet unmatched pairs. 63187 records in RAM.
INFO 2026-06-04 21:47:15 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,639
INFO 2026-06-04 21:47:15 MarkDuplicates Tracking 1014598 as yet unmatched pairs. 61693 records in RAM.
INFO 2026-06-04 21:47:17 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,803
INFO 2026-06-04 21:47:17 MarkDuplicates Tracking 1016949 as yet unmatched pairs. 64044 records in RAM.
INFO 2026-06-04 21:47:18 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,056
INFO 2026-06-04 21:47:18 MarkDuplicates Tracking 1014938 as yet unmatched pairs. 62031 records in RAM.
INFO 2026-06-04 21:47:20 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr7:101,002,330
INFO 2026-06-04 21:47:20 MarkDuplicates Tracking 1037834 as yet unmatched pairs. 84909 records in RAM.
INFO 2026-06-04 21:47:22 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,532
INFO 2026-06-04 21:47:22 MarkDuplicates Tracking 1043483 as yet unmatched pairs. 90549 records in RAM.
INFO 2026-06-04 21:47:23 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,898
INFO 2026-06-04 21:47:23 MarkDuplicates Tracking 1044978 as yet unmatched pairs. 92036 records in RAM.
INFO 2026-06-04 21:47:25 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,267
INFO 2026-06-04 21:47:25 MarkDuplicates Tracking 1003814 as yet unmatched pairs. 50849 records in RAM.
INFO 2026-06-04 21:47:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,725
INFO 2026-06-04 21:47:26 MarkDuplicates Tracking 991057 as yet unmatched pairs. 38066 records in RAM.
INFO 2026-06-04 21:47:27 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,969
INFO 2026-06-04 21:47:27 MarkDuplicates Tracking 980854 as yet unmatched pairs. 27861 records in RAM.
INFO 2026-06-04 21:47:28 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,275
INFO 2026-06-04 21:47:28 MarkDuplicates Tracking 981467 as yet unmatched pairs. 28470 records in RAM.
INFO 2026-06-04 21:47:30 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:101,034,566
INFO 2026-06-04 21:47:30 MarkDuplicates Tracking 979513 as yet unmatched pairs. 26485 records in RAM.
INFO 2026-06-04 21:47:31 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:102,468,867
INFO 2026-06-04 21:47:31 MarkDuplicates Tracking 975414 as yet unmatched pairs. 22333 records in RAM.
INFO 2026-06-04 21:47:33 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr7:107,917,310
INFO 2026-06-04 21:47:33 MarkDuplicates Tracking 974122 as yet unmatched pairs. 20996 records in RAM.
INFO 2026-06-04 21:47:36 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr7:116,795,659
INFO 2026-06-04 21:47:36 MarkDuplicates Tracking 972178 as yet unmatched pairs. 18993 records in RAM.
INFO 2026-06-04 21:47:39 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr7:127,702,464
INFO 2026-06-04 21:47:39 MarkDuplicates Tracking 970945 as yet unmatched pairs. 17699 records in RAM.
INFO 2026-06-04 21:47:40 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:129,857,511
INFO 2026-06-04 21:47:40 MarkDuplicates Tracking 967251 as yet unmatched pairs. 13938 records in RAM.
INFO 2026-06-04 21:47:42 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:138,898,957
INFO 2026-06-04 21:47:42 MarkDuplicates Tracking 964304 as yet unmatched pairs. 10937 records in RAM.
INFO 2026-06-04 21:47:43 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:142,791,838
INFO 2026-06-04 21:47:43 MarkDuplicates Tracking 961223 as yet unmatched pairs. 7791 records in RAM.
INFO 2026-06-04 21:47:45 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:149,008,281
INFO 2026-06-04 21:47:45 MarkDuplicates Tracking 959819 as yet unmatched pairs. 6355 records in RAM.
INFO 2026-06-04 21:47:47 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:151,214,963
INFO 2026-06-04 21:47:47 MarkDuplicates Tracking 956254 as yet unmatched pairs. 2719 records in RAM.
INFO 2026-06-04 21:47:49 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr8:463,018
INFO 2026-06-04 21:47:49 MarkDuplicates Tracking 953711 as yet unmatched pairs. 59867 records in RAM.
INFO 2026-06-04 21:47:51 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:19,851,665
INFO 2026-06-04 21:47:51 MarkDuplicates Tracking 951186 as yet unmatched pairs. 57280 records in RAM.
INFO 2026-06-04 21:47:52 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:29,070,586
INFO 2026-06-04 21:47:52 MarkDuplicates Tracking 948818 as yet unmatched pairs. 54858 records in RAM.
INFO 2026-06-04 21:47:55 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr8:37,899,387
INFO 2026-06-04 21:47:55 MarkDuplicates Tracking 945659 as yet unmatched pairs. 51648 records in RAM.
INFO 2026-06-04 21:47:57 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,150
INFO 2026-06-04 21:47:57 MarkDuplicates Tracking 943459 as yet unmatched pairs. 49398 records in RAM.
INFO 2026-06-04 21:47:58 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:54,047,996
INFO 2026-06-04 21:47:58 MarkDuplicates Tracking 941846 as yet unmatched pairs. 47722 records in RAM.
INFO 2026-06-04 21:48:00 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:61,642,912
INFO 2026-06-04 21:48:00 MarkDuplicates Tracking 941790 as yet unmatched pairs. 47625 records in RAM.
INFO 2026-06-04 21:48:02 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:70,596,306
INFO 2026-06-04 21:48:02 MarkDuplicates Tracking 939222 as yet unmatched pairs. 45017 records in RAM.
INFO 2026-06-04 21:48:03 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:85,177,365
INFO 2026-06-04 21:48:03 MarkDuplicates Tracking 934179 as yet unmatched pairs. 39910 records in RAM.
INFO 2026-06-04 21:48:05 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:94,177,672
INFO 2026-06-04 21:48:05 MarkDuplicates Tracking 934436 as yet unmatched pairs. 40122 records in RAM.
INFO 2026-06-04 21:48:06 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:99,135,689
INFO 2026-06-04 21:48:06 MarkDuplicates Tracking 929673 as yet unmatched pairs. 35305 records in RAM.
INFO 2026-06-04 21:48:09 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr8:100,717,778
INFO 2026-06-04 21:48:09 MarkDuplicates Tracking 932979 as yet unmatched pairs. 38565 records in RAM.
INFO 2026-06-04 21:48:11 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:102,836,365
INFO 2026-06-04 21:48:11 MarkDuplicates Tracking 925172 as yet unmatched pairs. 30699 records in RAM.
INFO 2026-06-04 21:48:13 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr8:119,221,702
INFO 2026-06-04 21:48:13 MarkDuplicates Tracking 925859 as yet unmatched pairs. 31300 records in RAM.
INFO 2026-06-04 21:48:15 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,614
INFO 2026-06-04 21:48:15 MarkDuplicates Tracking 923463 as yet unmatched pairs. 28863 records in RAM.
INFO 2026-06-04 21:48:16 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:140,511,570
INFO 2026-06-04 21:48:16 MarkDuplicates Tracking 917036 as yet unmatched pairs. 22371 records in RAM.
INFO 2026-06-04 21:48:18 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,032
INFO 2026-06-04 21:48:18 MarkDuplicates Tracking 914167 as yet unmatched pairs. 19452 records in RAM.
INFO 2026-06-04 21:48:20 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,511
INFO 2026-06-04 21:48:20 MarkDuplicates Tracking 912153 as yet unmatched pairs. 17418 records in RAM.
INFO 2026-06-04 21:48:21 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,315
INFO 2026-06-04 21:48:21 MarkDuplicates Tracking 913905 as yet unmatched pairs. 19162 records in RAM.
INFO 2026-06-04 21:48:22 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,680
INFO 2026-06-04 21:48:22 MarkDuplicates Tracking 911776 as yet unmatched pairs. 17032 records in RAM.
INFO 2026-06-04 21:48:23 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,116
INFO 2026-06-04 21:48:23 MarkDuplicates Tracking 919251 as yet unmatched pairs. 24495 records in RAM.
INFO 2026-06-04 21:48:25 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,779
INFO 2026-06-04 21:48:25 MarkDuplicates Tracking 909388 as yet unmatched pairs. 14623 records in RAM.
INFO 2026-06-04 21:48:27 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,315
INFO 2026-06-04 21:48:27 MarkDuplicates Tracking 907265 as yet unmatched pairs. 12499 records in RAM.
INFO 2026-06-04 21:48:28 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,160
INFO 2026-06-04 21:48:28 MarkDuplicates Tracking 905927 as yet unmatched pairs. 11135 records in RAM.
INFO 2026-06-04 21:48:30 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,942
INFO 2026-06-04 21:48:30 MarkDuplicates Tracking 902517 as yet unmatched pairs. 7687 records in RAM.
INFO 2026-06-04 21:48:32 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,810
INFO 2026-06-04 21:48:32 MarkDuplicates Tracking 898595 as yet unmatched pairs. 3716 records in RAM.
INFO 2026-06-04 21:48:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:144,842,749
INFO 2026-06-04 21:48:33 MarkDuplicates Tracking 895431 as yet unmatched pairs. 502 records in RAM.
INFO 2026-06-04 21:48:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,096
INFO 2026-06-04 21:48:35 MarkDuplicates Tracking 893073 as yet unmatched pairs. 52182 records in RAM.
INFO 2026-06-04 21:48:37 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:25,677,911
INFO 2026-06-04 21:48:37 MarkDuplicates Tracking 890505 as yet unmatched pairs. 49547 records in RAM.
INFO 2026-06-04 21:48:39 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:34,647,152
INFO 2026-06-04 21:48:39 MarkDuplicates Tracking 888102 as yet unmatched pairs. 47081 records in RAM.
INFO 2026-06-04 21:48:42 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr9:35,752,038
INFO 2026-06-04 21:48:42 MarkDuplicates Tracking 885475 as yet unmatched pairs. 44405 records in RAM.
INFO 2026-06-04 21:48:43 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:69,248,197
INFO 2026-06-04 21:48:43 MarkDuplicates Tracking 883226 as yet unmatched pairs. 42086 records in RAM.
INFO 2026-06-04 21:48:45 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:78,297,153
INFO 2026-06-04 21:48:45 MarkDuplicates Tracking 880558 as yet unmatched pairs. 39371 records in RAM.
INFO 2026-06-04 21:48:46 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:88,016,309
INFO 2026-06-04 21:48:46 MarkDuplicates Tracking 877989 as yet unmatched pairs. 36765 records in RAM.
INFO 2026-06-04 21:48:48 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:93,576,729
INFO 2026-06-04 21:48:48 MarkDuplicates Tracking 875426 as yet unmatched pairs. 34150 records in RAM.
INFO 2026-06-04 21:48:50 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:100,441,969
INFO 2026-06-04 21:48:50 MarkDuplicates Tracking 872852 as yet unmatched pairs. 31515 records in RAM.
INFO 2026-06-04 21:48:51 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:110,244,135
INFO 2026-06-04 21:48:51 MarkDuplicates Tracking 882366 as yet unmatched pairs. 40974 records in RAM.
INFO 2026-06-04 21:48:53 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:114,406,389
INFO 2026-06-04 21:48:53 MarkDuplicates Tracking 867790 as yet unmatched pairs. 26343 records in RAM.
INFO 2026-06-04 21:48:56 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr9:122,877,479
INFO 2026-06-04 21:48:56 MarkDuplicates Tracking 865377 as yet unmatched pairs. 23900 records in RAM.
INFO 2026-06-04 21:48:57 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:127,450,752
INFO 2026-06-04 21:48:57 MarkDuplicates Tracking 866193 as yet unmatched pairs. 24672 records in RAM.
INFO 2026-06-04 21:48:59 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:128,151,906
INFO 2026-06-04 21:48:59 MarkDuplicates Tracking 866263 as yet unmatched pairs. 24714 records in RAM.
INFO 2026-06-04 21:49:00 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:128,605,365
INFO 2026-06-04 21:49:00 MarkDuplicates Tracking 858063 as yet unmatched pairs. 16487 records in RAM.
INFO 2026-06-04 21:49:02 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:130,172,635
INFO 2026-06-04 21:49:02 MarkDuplicates Tracking 854776 as yet unmatched pairs. 13147 records in RAM.
INFO 2026-06-04 21:49:04 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:131,626,215
INFO 2026-06-04 21:49:04 MarkDuplicates Tracking 852456 as yet unmatched pairs. 10798 records in RAM.
INFO 2026-06-04 21:49:05 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,413
INFO 2026-06-04 21:49:05 MarkDuplicates Tracking 850162 as yet unmatched pairs. 8437 records in RAM.
INFO 2026-06-04 21:49:07 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:136,687,219
INFO 2026-06-04 21:49:07 MarkDuplicates Tracking 847131 as yet unmatched pairs. 5368 records in RAM.
INFO 2026-06-04 21:49:09 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,855
INFO 2026-06-04 21:49:09 MarkDuplicates Tracking 849204 as yet unmatched pairs. 7407 records in RAM.
INFO 2026-06-04 21:49:11 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:3,163,739
INFO 2026-06-04 21:49:11 MarkDuplicates Tracking 841785 as yet unmatched pairs. 48078 records in RAM.
INFO 2026-06-04 21:49:13 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr10:11,959,232
INFO 2026-06-04 21:49:13 MarkDuplicates Tracking 838533 as yet unmatched pairs. 44796 records in RAM.
INFO 2026-06-04 21:49:15 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:24,585,752
INFO 2026-06-04 21:49:15 MarkDuplicates Tracking 836155 as yet unmatched pairs. 42370 records in RAM.
INFO 2026-06-04 21:49:16 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:32,018,133
INFO 2026-06-04 21:49:16 MarkDuplicates Tracking 840878 as yet unmatched pairs. 47070 records in RAM.
INFO 2026-06-04 21:49:18 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:32,929,947
INFO 2026-06-04 21:49:18 MarkDuplicates Tracking 833877 as yet unmatched pairs. 40052 records in RAM.
INFO 2026-06-04 21:49:20 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,653
INFO 2026-06-04 21:49:20 MarkDuplicates Tracking 831633 as yet unmatched pairs. 37759 records in RAM.
INFO 2026-06-04 21:49:21 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:60,785,706
INFO 2026-06-04 21:49:21 MarkDuplicates Tracking 827656 as yet unmatched pairs. 33726 records in RAM.
INFO 2026-06-04 21:49:23 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:70,204,899
INFO 2026-06-04 21:49:23 MarkDuplicates Tracking 828595 as yet unmatched pairs. 34617 records in RAM.
INFO 2026-06-04 21:49:24 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:73,773,000
INFO 2026-06-04 21:49:24 MarkDuplicates Tracking 822254 as yet unmatched pairs. 28230 records in RAM.
INFO 2026-06-04 21:49:26 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:79,290,981
INFO 2026-06-04 21:49:26 MarkDuplicates Tracking 819957 as yet unmatched pairs. 25890 records in RAM.
INFO 2026-06-04 21:49:28 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:89,014,241
INFO 2026-06-04 21:49:28 MarkDuplicates Tracking 817756 as yet unmatched pairs. 23644 records in RAM.
INFO 2026-06-04 21:49:30 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr10:95,683,158
INFO 2026-06-04 21:49:30 MarkDuplicates Tracking 815340 as yet unmatched pairs. 21186 records in RAM.
INFO 2026-06-04 21:49:32 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:100,523,857
INFO 2026-06-04 21:49:32 MarkDuplicates Tracking 813638 as yet unmatched pairs. 19460 records in RAM.
INFO 2026-06-04 21:49:34 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:103,898,933
INFO 2026-06-04 21:49:34 MarkDuplicates Tracking 810168 as yet unmatched pairs. 15945 records in RAM.
INFO 2026-06-04 21:49:35 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:110,887,776
INFO 2026-06-04 21:49:35 MarkDuplicates Tracking 809283 as yet unmatched pairs. 15020 records in RAM.
INFO 2026-06-04 21:49:37 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:116,915,445
INFO 2026-06-04 21:49:37 MarkDuplicates Tracking 806786 as yet unmatched pairs. 12480 records in RAM.
INFO 2026-06-04 21:49:38 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:120,905,988
INFO 2026-06-04 21:49:38 MarkDuplicates Tracking 803005 as yet unmatched pairs. 8661 records in RAM.
INFO 2026-06-04 21:49:40 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:122,586,060
INFO 2026-06-04 21:49:40 MarkDuplicates Tracking 806855 as yet unmatched pairs. 12487 records in RAM.
INFO 2026-06-04 21:49:41 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:122,606,147
INFO 2026-06-04 21:49:41 MarkDuplicates Tracking 801690 as yet unmatched pairs. 7306 records in RAM.
INFO 2026-06-04 21:49:43 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:123,155,682
INFO 2026-06-04 21:49:43 MarkDuplicates Tracking 798127 as yet unmatched pairs. 3721 records in RAM.
INFO 2026-06-04 21:49:44 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:133,283,881
INFO 2026-06-04 21:49:44 MarkDuplicates Tracking 795251 as yet unmatched pairs. 766 records in RAM.
INFO 2026-06-04 21:49:48 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 3s. Last read position: chr11:532,690
INFO 2026-06-04 21:49:48 MarkDuplicates Tracking 792459 as yet unmatched pairs. 144675 records in RAM.
INFO 2026-06-04 21:49:50 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:884,143
INFO 2026-06-04 21:49:50 MarkDuplicates Tracking 789824 as yet unmatched pairs. 142010 records in RAM.
INFO 2026-06-04 21:49:52 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,092,959
INFO 2026-06-04 21:49:52 MarkDuplicates Tracking 789270 as yet unmatched pairs. 141433 records in RAM.
INFO 2026-06-04 21:49:53 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:1,175,023
INFO 2026-06-04 21:49:53 MarkDuplicates Tracking 794736 as yet unmatched pairs. 146843 records in RAM.
INFO 2026-06-04 21:49:55 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,182,710
INFO 2026-06-04 21:49:55 MarkDuplicates Tracking 787550 as yet unmatched pairs. 139627 records in RAM.
INFO 2026-06-04 21:49:56 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:1,183,527
INFO 2026-06-04 21:49:56 MarkDuplicates Tracking 797718 as yet unmatched pairs. 149786 records in RAM.
INFO 2026-06-04 21:49:58 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,360
INFO 2026-06-04 21:49:58 MarkDuplicates Tracking 785214 as yet unmatched pairs. 137274 records in RAM.
INFO 2026-06-04 21:49:59 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,830
INFO 2026-06-04 21:49:59 MarkDuplicates Tracking 779603 as yet unmatched pairs. 131641 records in RAM.
INFO 2026-06-04 21:50:01 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,186,028
INFO 2026-06-04 21:50:01 MarkDuplicates Tracking 786879 as yet unmatched pairs. 138898 records in RAM.
INFO 2026-06-04 21:50:03 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:1,186,994
INFO 2026-06-04 21:50:03 MarkDuplicates Tracking 784369 as yet unmatched pairs. 136374 records in RAM.
INFO 2026-06-04 21:50:05 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr11:1,188,031
INFO 2026-06-04 21:50:05 MarkDuplicates Tracking 790508 as yet unmatched pairs. 142500 records in RAM.
INFO 2026-06-04 21:50:06 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:1,188,998
INFO 2026-06-04 21:50:06 MarkDuplicates Tracking 783776 as yet unmatched pairs. 135752 records in RAM.
INFO 2026-06-04 21:50:08 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,190,208
INFO 2026-06-04 21:50:08 MarkDuplicates Tracking 784786 as yet unmatched pairs. 136750 records in RAM.
INFO 2026-06-04 21:50:09 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,106
INFO 2026-06-04 21:50:09 MarkDuplicates Tracking 774147 as yet unmatched pairs. 126100 records in RAM.
INFO 2026-06-04 21:50:11 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,665
INFO 2026-06-04 21:50:11 MarkDuplicates Tracking 772047 as yet unmatched pairs. 123989 records in RAM.
INFO 2026-06-04 21:50:13 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:1,192,940
INFO 2026-06-04 21:50:13 MarkDuplicates Tracking 766890 as yet unmatched pairs. 118810 records in RAM.
INFO 2026-06-04 21:50:14 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:1,200,551
INFO 2026-06-04 21:50:14 MarkDuplicates Tracking 768539 as yet unmatched pairs. 120431 records in RAM.
INFO 2026-06-04 21:50:16 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,237,070
INFO 2026-06-04 21:50:16 MarkDuplicates Tracking 757188 as yet unmatched pairs. 109049 records in RAM.
INFO 2026-06-04 21:50:17 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,687
INFO 2026-06-04 21:50:17 MarkDuplicates Tracking 760076 as yet unmatched pairs. 111902 records in RAM.
INFO 2026-06-04 21:50:20 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr11:1,243,198
INFO 2026-06-04 21:50:20 MarkDuplicates Tracking 757230 as yet unmatched pairs. 109048 records in RAM.
INFO 2026-06-04 21:50:21 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,650
INFO 2026-06-04 21:50:21 MarkDuplicates Tracking 757914 as yet unmatched pairs. 109724 records in RAM.
INFO 2026-06-04 21:50:23 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,234
INFO 2026-06-04 21:50:23 MarkDuplicates Tracking 759838 as yet unmatched pairs. 111630 records in RAM.
INFO 2026-06-04 21:50:24 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,579
INFO 2026-06-04 21:50:24 MarkDuplicates Tracking 761182 as yet unmatched pairs. 112969 records in RAM.
INFO 2026-06-04 21:50:25 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,077
INFO 2026-06-04 21:50:25 MarkDuplicates Tracking 751322 as yet unmatched pairs. 103107 records in RAM.
INFO 2026-06-04 21:50:26 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,646
INFO 2026-06-04 21:50:26 MarkDuplicates Tracking 758257 as yet unmatched pairs. 110041 records in RAM.
INFO 2026-06-04 21:50:28 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,548
INFO 2026-06-04 21:50:28 MarkDuplicates Tracking 756244 as yet unmatched pairs. 108015 records in RAM.
INFO 2026-06-04 21:50:29 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,117
INFO 2026-06-04 21:50:29 MarkDuplicates Tracking 755253 as yet unmatched pairs. 107012 records in RAM.
INFO 2026-06-04 21:50:31 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,611
INFO 2026-06-04 21:50:31 MarkDuplicates Tracking 749596 as yet unmatched pairs. 101340 records in RAM.
INFO 2026-06-04 21:50:32 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,173
INFO 2026-06-04 21:50:32 MarkDuplicates Tracking 750627 as yet unmatched pairs. 102367 records in RAM.
INFO 2026-06-04 21:50:33 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,781
INFO 2026-06-04 21:50:33 MarkDuplicates Tracking 752179 as yet unmatched pairs. 103912 records in RAM.
INFO 2026-06-04 21:50:36 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr11:1,249,172
INFO 2026-06-04 21:50:36 MarkDuplicates Tracking 749564 as yet unmatched pairs. 101275 records in RAM.
INFO 2026-06-04 21:50:39 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:1,250,017
INFO 2026-06-04 21:50:39 MarkDuplicates Tracking 741048 as yet unmatched pairs. 92751 records in RAM.
INFO 2026-06-04 21:50:40 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,629
INFO 2026-06-04 21:50:40 MarkDuplicates Tracking 736314 as yet unmatched pairs. 88000 records in RAM.
INFO 2026-06-04 21:50:42 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,509
INFO 2026-06-04 21:50:42 MarkDuplicates Tracking 742579 as yet unmatched pairs. 94255 records in RAM.
INFO 2026-06-04 21:50:43 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:1,261,519
INFO 2026-06-04 21:50:43 MarkDuplicates Tracking 733754 as yet unmatched pairs. 85402 records in RAM.
INFO 2026-06-04 21:50:45 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:3,683,350
INFO 2026-06-04 21:50:45 MarkDuplicates Tracking 726697 as yet unmatched pairs. 78310 records in RAM.
INFO 2026-06-04 21:50:47 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,005
INFO 2026-06-04 21:50:47 MarkDuplicates Tracking 728370 as yet unmatched pairs. 79954 records in RAM.
INFO 2026-06-04 21:50:49 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr11:10,806,825
INFO 2026-06-04 21:50:49 MarkDuplicates Tracking 722010 as yet unmatched pairs. 73564 records in RAM.
INFO 2026-06-04 21:50:51 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:16,974,733
INFO 2026-06-04 21:50:51 MarkDuplicates Tracking 721226 as yet unmatched pairs. 72734 records in RAM.
INFO 2026-06-04 21:50:53 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:27,362,843
INFO 2026-06-04 21:50:53 MarkDuplicates Tracking 716630 as yet unmatched pairs. 68112 records in RAM.
INFO 2026-06-04 21:50:55 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:34,356,667
INFO 2026-06-04 21:50:55 MarkDuplicates Tracking 714144 as yet unmatched pairs. 65599 records in RAM.
INFO 2026-06-04 21:50:57 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:46,278,177
INFO 2026-06-04 21:50:57 MarkDuplicates Tracking 715353 as yet unmatched pairs. 66777 records in RAM.
INFO 2026-06-04 21:50:58 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:46,790,524
INFO 2026-06-04 21:50:58 MarkDuplicates Tracking 709080 as yet unmatched pairs. 60486 records in RAM.
INFO 2026-06-04 21:51:00 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:57,528,854
INFO 2026-06-04 21:51:00 MarkDuplicates Tracking 706869 as yet unmatched pairs. 58246 records in RAM.
INFO 2026-06-04 21:51:01 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:59,852,911
INFO 2026-06-04 21:51:01 MarkDuplicates Tracking 706306 as yet unmatched pairs. 57642 records in RAM.
INFO 2026-06-04 21:51:03 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:61,965,006
INFO 2026-06-04 21:51:03 MarkDuplicates Tracking 707233 as yet unmatched pairs. 58532 records in RAM.
INFO 2026-06-04 21:51:05 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:62,522,191
INFO 2026-06-04 21:51:05 MarkDuplicates Tracking 701032 as yet unmatched pairs. 52314 records in RAM.
INFO 2026-06-04 21:51:08 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr11:62,528,540
INFO 2026-06-04 21:51:08 MarkDuplicates Tracking 699429 as yet unmatched pairs. 50688 records in RAM.
INFO 2026-06-04 21:51:09 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:62,570,987
INFO 2026-06-04 21:51:09 MarkDuplicates Tracking 695898 as yet unmatched pairs. 47136 records in RAM.
INFO 2026-06-04 21:51:11 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:63,750,087
INFO 2026-06-04 21:51:11 MarkDuplicates Tracking 693204 as yet unmatched pairs. 44418 records in RAM.
INFO 2026-06-04 21:51:12 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,978
INFO 2026-06-04 21:51:12 MarkDuplicates Tracking 689840 as yet unmatched pairs. 41024 records in RAM.
INFO 2026-06-04 21:51:14 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:65,210,843
INFO 2026-06-04 21:51:14 MarkDuplicates Tracking 687108 as yet unmatched pairs. 38263 records in RAM.
INFO 2026-06-04 21:51:16 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,992
INFO 2026-06-04 21:51:16 MarkDuplicates Tracking 687511 as yet unmatched pairs. 38463 records in RAM.
INFO 2026-06-04 21:51:17 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:66,689,890
INFO 2026-06-04 21:51:17 MarkDuplicates Tracking 680631 as yet unmatched pairs. 31549 records in RAM.
INFO 2026-06-04 21:51:19 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:67,584,705
INFO 2026-06-04 21:51:19 MarkDuplicates Tracking 683887 as yet unmatched pairs. 34785 records in RAM.
INFO 2026-06-04 21:51:21 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:69,085,697
INFO 2026-06-04 21:51:21 MarkDuplicates Tracking 674698 as yet unmatched pairs. 25560 records in RAM.
INFO 2026-06-04 21:51:22 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,680
INFO 2026-06-04 21:51:22 MarkDuplicates Tracking 672268 as yet unmatched pairs. 23097 records in RAM.
INFO 2026-06-04 21:51:24 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr11:75,402,347
INFO 2026-06-04 21:51:24 MarkDuplicates Tracking 673540 as yet unmatched pairs. 24325 records in RAM.
INFO 2026-06-04 21:51:26 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:83,181,876
INFO 2026-06-04 21:51:26 MarkDuplicates Tracking 666833 as yet unmatched pairs. 17574 records in RAM.
INFO 2026-06-04 21:51:28 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr11:102,229,718
INFO 2026-06-04 21:51:28 MarkDuplicates Tracking 665104 as yet unmatched pairs. 15809 records in RAM.
INFO 2026-06-04 21:51:30 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:117,136,577
INFO 2026-06-04 21:51:30 MarkDuplicates Tracking 661731 as yet unmatched pairs. 12395 records in RAM.
INFO 2026-06-04 21:51:31 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:118,763,250
INFO 2026-06-04 21:51:31 MarkDuplicates Tracking 659527 as yet unmatched pairs. 10161 records in RAM.
INFO 2026-06-04 21:51:33 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:120,451,644
INFO 2026-06-04 21:51:33 MarkDuplicates Tracking 657080 as yet unmatched pairs. 7688 records in RAM.
INFO 2026-06-04 21:51:34 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:124,691,697
INFO 2026-06-04 21:51:34 MarkDuplicates Tracking 654494 as yet unmatched pairs. 5082 records in RAM.
INFO 2026-06-04 21:51:36 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:129,815,825
INFO 2026-06-04 21:51:36 MarkDuplicates Tracking 651821 as yet unmatched pairs. 2393 records in RAM.
INFO 2026-06-04 21:51:38 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr12:536,271
INFO 2026-06-04 21:51:38 MarkDuplicates Tracking 649681 as yet unmatched pairs. 77495 records in RAM.
INFO 2026-06-04 21:51:40 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,236,232
INFO 2026-06-04 21:51:40 MarkDuplicates Tracking 648524 as yet unmatched pairs. 76292 records in RAM.
INFO 2026-06-04 21:51:42 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,729,337
INFO 2026-06-04 21:51:42 MarkDuplicates Tracking 644317 as yet unmatched pairs. 72037 records in RAM.
INFO 2026-06-04 21:51:43 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,388
INFO 2026-06-04 21:51:43 MarkDuplicates Tracking 641674 as yet unmatched pairs. 69369 records in RAM.
INFO 2026-06-04 21:51:46 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr12:12,909,110
INFO 2026-06-04 21:51:46 MarkDuplicates Tracking 643619 as yet unmatched pairs. 71296 records in RAM.
INFO 2026-06-04 21:51:47 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:21,047,207
INFO 2026-06-04 21:51:47 MarkDuplicates Tracking 636794 as yet unmatched pairs. 64441 records in RAM.
INFO 2026-06-04 21:51:49 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:32,399,723
INFO 2026-06-04 21:51:49 MarkDuplicates Tracking 634244 as yet unmatched pairs. 61859 records in RAM.
INFO 2026-06-04 21:51:51 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:46,370,776
INFO 2026-06-04 21:51:51 MarkDuplicates Tracking 632140 as yet unmatched pairs. 59726 records in RAM.
INFO 2026-06-04 21:51:52 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,297
INFO 2026-06-04 21:51:52 MarkDuplicates Tracking 634296 as yet unmatched pairs. 61857 records in RAM.
INFO 2026-06-04 21:51:54 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:50,177,006
INFO 2026-06-04 21:51:54 MarkDuplicates Tracking 627271 as yet unmatched pairs. 54804 records in RAM.
INFO 2026-06-04 21:51:55 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:52,898,872
INFO 2026-06-04 21:51:55 MarkDuplicates Tracking 628159 as yet unmatched pairs. 55670 records in RAM.
INFO 2026-06-04 21:51:57 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:53,034,678
INFO 2026-06-04 21:51:57 MarkDuplicates Tracking 623503 as yet unmatched pairs. 50994 records in RAM.
INFO 2026-06-04 21:51:59 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,328
INFO 2026-06-04 21:51:59 MarkDuplicates Tracking 622140 as yet unmatched pairs. 49613 records in RAM.
INFO 2026-06-04 21:52:00 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:55,726,746
INFO 2026-06-04 21:52:00 MarkDuplicates Tracking 621585 as yet unmatched pairs. 49034 records in RAM.
INFO 2026-06-04 21:52:03 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:56,159,602
INFO 2026-06-04 21:52:03 MarkDuplicates Tracking 616069 as yet unmatched pairs. 43500 records in RAM.
INFO 2026-06-04 21:52:04 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:56,643,529
INFO 2026-06-04 21:52:04 MarkDuplicates Tracking 614774 as yet unmatched pairs. 42175 records in RAM.
INFO 2026-06-04 21:52:06 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,863
INFO 2026-06-04 21:52:06 MarkDuplicates Tracking 613608 as yet unmatched pairs. 40990 records in RAM.
INFO 2026-06-04 21:52:08 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:57,233,623
INFO 2026-06-04 21:52:08 MarkDuplicates Tracking 607863 as yet unmatched pairs. 35213 records in RAM.
INFO 2026-06-04 21:52:09 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:62,965,573
INFO 2026-06-04 21:52:09 MarkDuplicates Tracking 604771 as yet unmatched pairs. 32090 records in RAM.
INFO 2026-06-04 21:52:11 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:69,350,142
INFO 2026-06-04 21:52:11 MarkDuplicates Tracking 626314 as yet unmatched pairs. 53616 records in RAM.
INFO 2026-06-04 21:52:13 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:71,584,432
INFO 2026-06-04 21:52:13 MarkDuplicates Tracking 600072 as yet unmatched pairs. 27340 records in RAM.
INFO 2026-06-04 21:52:14 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:89,620,156
INFO 2026-06-04 21:52:14 MarkDuplicates Tracking 597920 as yet unmatched pairs. 25151 records in RAM.
INFO 2026-06-04 21:52:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr12:98,680,350
INFO 2026-06-04 21:52:16 MarkDuplicates Tracking 595257 as yet unmatched pairs. 22462 records in RAM.
INFO 2026-06-04 21:52:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,530
INFO 2026-06-04 21:52:18 MarkDuplicates Tracking 593257 as yet unmatched pairs. 20435 records in RAM.
INFO 2026-06-04 21:52:20 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:109,857,611
INFO 2026-06-04 21:52:20 MarkDuplicates Tracking 590623 as yet unmatched pairs. 17755 records in RAM.
INFO 2026-06-04 21:52:21 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:112,075,743
INFO 2026-06-04 21:52:21 MarkDuplicates Tracking 588094 as yet unmatched pairs. 15204 records in RAM.
INFO 2026-06-04 21:52:23 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:115,996,597
INFO 2026-06-04 21:52:23 MarkDuplicates Tracking 585583 as yet unmatched pairs. 12666 records in RAM.
INFO 2026-06-04 21:52:25 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:120,212,444
INFO 2026-06-04 21:52:25 MarkDuplicates Tracking 583856 as yet unmatched pairs. 10886 records in RAM.
INFO 2026-06-04 21:52:26 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:122,132,357
INFO 2026-06-04 21:52:26 MarkDuplicates Tracking 582440 as yet unmatched pairs. 9443 records in RAM.
INFO 2026-06-04 21:52:28 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:123,937,137
INFO 2026-06-04 21:52:28 MarkDuplicates Tracking 577673 as yet unmatched pairs. 4647 records in RAM.
INFO 2026-06-04 21:52:29 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:131,961,906
INFO 2026-06-04 21:52:29 MarkDuplicates Tracking 575175 as yet unmatched pairs. 2117 records in RAM.
INFO 2026-06-04 21:52:31 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr13:20,064,510
INFO 2026-06-04 21:52:31 MarkDuplicates Tracking 573672 as yet unmatched pairs. 27074 records in RAM.
INFO 2026-06-04 21:52:33 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr13:27,424,830
INFO 2026-06-04 21:52:33 MarkDuplicates Tracking 570631 as yet unmatched pairs. 23999 records in RAM.
INFO 2026-06-04 21:52:35 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr13:39,665,113
INFO 2026-06-04 21:52:35 MarkDuplicates Tracking 567933 as yet unmatched pairs. 21271 records in RAM.
INFO 2026-06-04 21:52:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr13:46,134,163
INFO 2026-06-04 21:52:37 MarkDuplicates Tracking 565327 as yet unmatched pairs. 18625 records in RAM.
INFO 2026-06-04 21:52:38 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr13:53,028,823
INFO 2026-06-04 21:52:38 MarkDuplicates Tracking 567748 as yet unmatched pairs. 21020 records in RAM.
INFO 2026-06-04 21:52:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr13:53,042,075
INFO 2026-06-04 21:52:40 MarkDuplicates Tracking 608326 as yet unmatched pairs. 61574 records in RAM.
INFO 2026-06-04 21:52:42 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr13:53,050,319
INFO 2026-06-04 21:52:42 MarkDuplicates Tracking 621500 as yet unmatched pairs. 74735 records in RAM.
INFO 2026-06-04 21:52:43 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr13:73,059,538
INFO 2026-06-04 21:52:43 MarkDuplicates Tracking 557132 as yet unmatched pairs. 10324 records in RAM.
INFO 2026-06-04 21:52:45 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr13:81,690,132
INFO 2026-06-04 21:52:45 MarkDuplicates Tracking 553273 as yet unmatched pairs. 6434 records in RAM.
INFO 2026-06-04 21:52:46 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr13:102,853,785
INFO 2026-06-04 21:52:46 MarkDuplicates Tracking 550833 as yet unmatched pairs. 3974 records in RAM.
INFO 2026-06-04 21:52:48 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr13:113,319,467
INFO 2026-06-04 21:52:48 MarkDuplicates Tracking 549120 as yet unmatched pairs. 2229 records in RAM.
INFO 2026-06-04 21:52:51 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr14:21,092,668
INFO 2026-06-04 21:52:51 MarkDuplicates Tracking 545598 as yet unmatched pairs. 47493 records in RAM.
INFO 2026-06-04 21:52:52 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:22,924,125
INFO 2026-06-04 21:52:52 MarkDuplicates Tracking 542799 as yet unmatched pairs. 44680 records in RAM.
INFO 2026-06-04 21:52:54 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr14:24,182,806
INFO 2026-06-04 21:52:54 MarkDuplicates Tracking 540223 as yet unmatched pairs. 42088 records in RAM.
INFO 2026-06-04 21:52:56 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr14:32,092,533
INFO 2026-06-04 21:52:56 MarkDuplicates Tracking 538247 as yet unmatched pairs. 40092 records in RAM.
INFO 2026-06-04 21:52:57 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr14:49,583,638
INFO 2026-06-04 21:52:57 MarkDuplicates Tracking 544922 as yet unmatched pairs. 46741 records in RAM.
INFO 2026-06-04 21:52:59 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:52,780,697
INFO 2026-06-04 21:52:59 MarkDuplicates Tracking 532912 as yet unmatched pairs. 34628 records in RAM.
INFO 2026-06-04 21:53:01 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:57,286,223
INFO 2026-06-04 21:53:01 MarkDuplicates Tracking 530007 as yet unmatched pairs. 31707 records in RAM.
INFO 2026-06-04 21:53:02 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:64,132,418
INFO 2026-06-04 21:53:02 MarkDuplicates Tracking 527947 as yet unmatched pairs. 29612 records in RAM.
INFO 2026-06-04 21:53:04 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr14:68,291,920
INFO 2026-06-04 21:53:04 MarkDuplicates Tracking 524945 as yet unmatched pairs. 26577 records in RAM.
INFO 2026-06-04 21:53:05 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr14:73,276,816
INFO 2026-06-04 21:53:05 MarkDuplicates Tracking 522750 as yet unmatched pairs. 24340 records in RAM.
INFO 2026-06-04 21:53:08 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr14:75,941,565
INFO 2026-06-04 21:53:08 MarkDuplicates Tracking 519786 as yet unmatched pairs. 21363 records in RAM.
INFO 2026-06-04 21:53:10 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:91,783,120
INFO 2026-06-04 21:53:10 MarkDuplicates Tracking 517881 as yet unmatched pairs. 19404 records in RAM.
INFO 2026-06-04 21:53:11 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:95,130,077
INFO 2026-06-04 21:53:11 MarkDuplicates Tracking 515104 as yet unmatched pairs. 16597 records in RAM.
INFO 2026-06-04 21:53:13 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:102,005,093
INFO 2026-06-04 21:53:13 MarkDuplicates Tracking 513113 as yet unmatched pairs. 14570 records in RAM.
INFO 2026-06-04 21:53:15 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:102,968,471
INFO 2026-06-04 21:53:15 MarkDuplicates Tracking 509445 as yet unmatched pairs. 10876 records in RAM.
INFO 2026-06-04 21:53:16 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr14:104,770,753
INFO 2026-06-04 21:53:16 MarkDuplicates Tracking 506830 as yet unmatched pairs. 8233 records in RAM.
INFO 2026-06-04 21:53:18 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,127
INFO 2026-06-04 21:53:18 MarkDuplicates Tracking 508620 as yet unmatched pairs. 9999 records in RAM.
INFO 2026-06-04 21:53:19 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,013
INFO 2026-06-04 21:53:19 MarkDuplicates Tracking 505260 as yet unmatched pairs. 6622 records in RAM.
INFO 2026-06-04 21:53:21 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,931,731
INFO 2026-06-04 21:53:21 MarkDuplicates Tracking 498742 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-04 21:53:24 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr15:31,327,783
INFO 2026-06-04 21:53:24 MarkDuplicates Tracking 496944 as yet unmatched pairs. 47683 records in RAM.
INFO 2026-06-04 21:53:25 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr15:38,351,019
INFO 2026-06-04 21:53:25 MarkDuplicates Tracking 495134 as yet unmatched pairs. 45854 records in RAM.
INFO 2026-06-04 21:53:27 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr15:41,278,870
INFO 2026-06-04 21:53:27 MarkDuplicates Tracking 494186 as yet unmatched pairs. 44887 records in RAM.
INFO 2026-06-04 21:53:28 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr15:43,573,082
INFO 2026-06-04 21:53:28 MarkDuplicates Tracking 489592 as yet unmatched pairs. 40277 records in RAM.
INFO 2026-06-04 21:53:30 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,843
INFO 2026-06-04 21:53:30 MarkDuplicates Tracking 490468 as yet unmatched pairs. 41138 records in RAM.
INFO 2026-06-04 21:53:31 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr15:45,104,326
INFO 2026-06-04 21:53:31 MarkDuplicates Tracking 485932 as yet unmatched pairs. 36573 records in RAM.
INFO 2026-06-04 21:53:33 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr15:49,139,551
INFO 2026-06-04 21:53:33 MarkDuplicates Tracking 482116 as yet unmatched pairs. 32733 records in RAM.
INFO 2026-06-04 21:53:35 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr15:57,192,158
INFO 2026-06-04 21:53:35 MarkDuplicates Tracking 481618 as yet unmatched pairs. 32208 records in RAM.
INFO 2026-06-04 21:53:37 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr15:59,618,935
INFO 2026-06-04 21:53:37 MarkDuplicates Tracking 479075 as yet unmatched pairs. 29648 records in RAM.
INFO 2026-06-04 21:53:39 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:61,961,722
INFO 2026-06-04 21:53:39 MarkDuplicates Tracking 475360 as yet unmatched pairs. 25922 records in RAM.
INFO 2026-06-04 21:53:41 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:64,499,418
INFO 2026-06-04 21:53:41 MarkDuplicates Tracking 472350 as yet unmatched pairs. 22881 records in RAM.
INFO 2026-06-04 21:53:43 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:67,646,288
INFO 2026-06-04 21:53:43 MarkDuplicates Tracking 469742 as yet unmatched pairs. 20256 records in RAM.
INFO 2026-06-04 21:53:44 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:72,209,808
INFO 2026-06-04 21:53:44 MarkDuplicates Tracking 469840 as yet unmatched pairs. 20318 records in RAM.
INFO 2026-06-04 21:53:46 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr15:74,920,363
INFO 2026-06-04 21:53:46 MarkDuplicates Tracking 464623 as yet unmatched pairs. 15069 records in RAM.
INFO 2026-06-04 21:53:47 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:77,181,460
INFO 2026-06-04 21:53:47 MarkDuplicates Tracking 461478 as yet unmatched pairs. 11896 records in RAM.
INFO 2026-06-04 21:53:49 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr15:82,540,007
INFO 2026-06-04 21:53:49 MarkDuplicates Tracking 458849 as yet unmatched pairs. 9245 records in RAM.
INFO 2026-06-04 21:53:50 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr15:89,175,936
INFO 2026-06-04 21:53:50 MarkDuplicates Tracking 458219 as yet unmatched pairs. 8591 records in RAM.
INFO 2026-06-04 21:53:52 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr15:90,087,254
INFO 2026-06-04 21:53:52 MarkDuplicates Tracking 455791 as yet unmatched pairs. 6155 records in RAM.
INFO 2026-06-04 21:53:54 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:90,974,731
INFO 2026-06-04 21:53:54 MarkDuplicates Tracking 451437 as yet unmatched pairs. 1782 records in RAM.
INFO 2026-06-04 21:53:57 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:377,462
INFO 2026-06-04 21:53:57 MarkDuplicates Tracking 449243 as yet unmatched pairs. 67245 records in RAM.
INFO 2026-06-04 21:53:59 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:1,494,354
INFO 2026-06-04 21:53:59 MarkDuplicates Tracking 445580 as yet unmatched pairs. 63562 records in RAM.
INFO 2026-06-04 21:54:00 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:2,213,781
INFO 2026-06-04 21:54:00 MarkDuplicates Tracking 442274 as yet unmatched pairs. 60235 records in RAM.
INFO 2026-06-04 21:54:02 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,999
INFO 2026-06-04 21:54:02 MarkDuplicates Tracking 440422 as yet unmatched pairs. 58372 records in RAM.
INFO 2026-06-04 21:54:04 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:3,397,200
INFO 2026-06-04 21:54:04 MarkDuplicates Tracking 436723 as yet unmatched pairs. 54656 records in RAM.
INFO 2026-06-04 21:54:05 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:5,090,523
INFO 2026-06-04 21:54:05 MarkDuplicates Tracking 434066 as yet unmatched pairs. 51979 records in RAM.
INFO 2026-06-04 21:54:07 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:14,627,331
INFO 2026-06-04 21:54:07 MarkDuplicates Tracking 431937 as yet unmatched pairs. 49826 records in RAM.
INFO 2026-06-04 21:54:09 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:15,732,563
INFO 2026-06-04 21:54:09 MarkDuplicates Tracking 429901 as yet unmatched pairs. 47777 records in RAM.
INFO 2026-06-04 21:54:10 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:18,396,405
INFO 2026-06-04 21:54:10 MarkDuplicates Tracking 428776 as yet unmatched pairs. 46641 records in RAM.
INFO 2026-06-04 21:54:12 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:19,527,814
INFO 2026-06-04 21:54:12 MarkDuplicates Tracking 426521 as yet unmatched pairs. 44375 records in RAM.
INFO 2026-06-04 21:54:14 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,971
INFO 2026-06-04 21:54:14 MarkDuplicates Tracking 425194 as yet unmatched pairs. 43035 records in RAM.
INFO 2026-06-04 21:54:16 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:22,536,005
INFO 2026-06-04 21:54:16 MarkDuplicates Tracking 424291 as yet unmatched pairs. 42113 records in RAM.
INFO 2026-06-04 21:54:17 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:28,380,095
INFO 2026-06-04 21:54:17 MarkDuplicates Tracking 422893 as yet unmatched pairs. 40683 records in RAM.
INFO 2026-06-04 21:54:19 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:28,914,558
INFO 2026-06-04 21:54:19 MarkDuplicates Tracking 419716 as yet unmatched pairs. 37489 records in RAM.
INFO 2026-06-04 21:54:21 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:29,810,260
INFO 2026-06-04 21:54:21 MarkDuplicates Tracking 419182 as yet unmatched pairs. 36944 records in RAM.
INFO 2026-06-04 21:54:22 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,970
INFO 2026-06-04 21:54:22 MarkDuplicates Tracking 419189 as yet unmatched pairs. 36931 records in RAM.
INFO 2026-06-04 21:54:24 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,555,965
INFO 2026-06-04 21:54:24 MarkDuplicates Tracking 413188 as yet unmatched pairs. 30918 records in RAM.
INFO 2026-06-04 21:54:26 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,207
INFO 2026-06-04 21:54:26 MarkDuplicates Tracking 414056 as yet unmatched pairs. 31761 records in RAM.
INFO 2026-06-04 21:54:27 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:48,560,939
INFO 2026-06-04 21:54:27 MarkDuplicates Tracking 408121 as yet unmatched pairs. 25817 records in RAM.
INFO 2026-06-04 21:54:29 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:57,059,026
INFO 2026-06-04 21:54:29 MarkDuplicates Tracking 405720 as yet unmatched pairs. 23395 records in RAM.
INFO 2026-06-04 21:54:31 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:66,558,207
INFO 2026-06-04 21:54:31 MarkDuplicates Tracking 404482 as yet unmatched pairs. 22145 records in RAM.
INFO 2026-06-04 21:54:33 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:67,865,114
INFO 2026-06-04 21:54:33 MarkDuplicates Tracking 400937 as yet unmatched pairs. 18593 records in RAM.
INFO 2026-06-04 21:54:34 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:69,318,822
INFO 2026-06-04 21:54:34 MarkDuplicates Tracking 397261 as yet unmatched pairs. 14898 records in RAM.
INFO 2026-06-04 21:54:36 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:71,284,196
INFO 2026-06-04 21:54:36 MarkDuplicates Tracking 394865 as yet unmatched pairs. 12485 records in RAM.
INFO 2026-06-04 21:54:37 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:75,242,991
INFO 2026-06-04 21:54:37 MarkDuplicates Tracking 392460 as yet unmatched pairs. 10064 records in RAM.
INFO 2026-06-04 21:54:39 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:84,873,058
INFO 2026-06-04 21:54:39 MarkDuplicates Tracking 389370 as yet unmatched pairs. 6951 records in RAM.
INFO 2026-06-04 21:54:41 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:88,721,311
INFO 2026-06-04 21:54:41 MarkDuplicates Tracking 386940 as yet unmatched pairs. 4496 records in RAM.
INFO 2026-06-04 21:54:43 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:89,733,980
INFO 2026-06-04 21:54:43 MarkDuplicates Tracking 383367 as yet unmatched pairs. 909 records in RAM.
INFO 2026-06-04 21:54:45 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,994
INFO 2026-06-04 21:54:45 MarkDuplicates Tracking 387153 as yet unmatched pairs. 110103 records in RAM.
INFO 2026-06-04 21:54:47 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:2,033,579
INFO 2026-06-04 21:54:47 MarkDuplicates Tracking 378158 as yet unmatched pairs. 101098 records in RAM.
INFO 2026-06-04 21:54:49 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:4,539,733
INFO 2026-06-04 21:54:49 MarkDuplicates Tracking 375709 as yet unmatched pairs. 98629 records in RAM.
INFO 2026-06-04 21:54:50 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr17:5,007,303
INFO 2026-06-04 21:54:50 MarkDuplicates Tracking 373067 as yet unmatched pairs. 95978 records in RAM.
INFO 2026-06-04 21:54:52 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:7,260,653
INFO 2026-06-04 21:54:52 MarkDuplicates Tracking 372057 as yet unmatched pairs. 94958 records in RAM.
INFO 2026-06-04 21:54:54 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:7,559,625
INFO 2026-06-04 21:54:54 MarkDuplicates Tracking 367614 as yet unmatched pairs. 90499 records in RAM.
INFO 2026-06-04 21:57:14 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 140s. Last read position: chr17:7,931,517
INFO 2026-06-04 21:57:14 MarkDuplicates Tracking 365623 as yet unmatched pairs. 88501 records in RAM.
INFO 2026-06-04 21:57:18 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 4s. Last read position: chr17:16,108,799
INFO 2026-06-04 21:57:18 MarkDuplicates Tracking 362649 as yet unmatched pairs. 85508 records in RAM.
INFO 2026-06-04 21:57:20 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr17:17,907,504
INFO 2026-06-04 21:57:20 MarkDuplicates Tracking 359289 as yet unmatched pairs. 82130 records in RAM.
INFO 2026-06-04 21:57:23 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr17:27,304,778
INFO 2026-06-04 21:57:23 MarkDuplicates Tracking 357537 as yet unmatched pairs. 80371 records in RAM.
INFO 2026-06-04 21:57:26 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 3s. Last read position: chr17:28,741,880
INFO 2026-06-04 21:57:26 MarkDuplicates Tracking 354237 as yet unmatched pairs. 77061 records in RAM.
INFO 2026-06-04 21:57:28 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr17:31,230,350
INFO 2026-06-04 21:57:28 MarkDuplicates Tracking 352089 as yet unmatched pairs. 74898 records in RAM.
INFO 2026-06-04 21:57:31 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 3s. Last read position: chr17:35,674,157
INFO 2026-06-04 21:57:31 MarkDuplicates Tracking 349836 as yet unmatched pairs. 72631 records in RAM.
INFO 2026-06-04 21:57:33 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr17:37,596,317
INFO 2026-06-04 21:57:33 MarkDuplicates Tracking 346831 as yet unmatched pairs. 69621 records in RAM.
INFO 2026-06-04 21:57:36 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 2s. Last read position: chr17:39,200,329
INFO 2026-06-04 21:57:36 MarkDuplicates Tracking 344753 as yet unmatched pairs. 67537 records in RAM.
INFO 2026-06-04 21:57:39 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,366
INFO 2026-06-04 21:57:39 MarkDuplicates Tracking 347470 as yet unmatched pairs. 70243 records in RAM.
INFO 2026-06-04 21:57:43 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 3s. Last read position: chr17:39,745,282
INFO 2026-06-04 21:57:43 MarkDuplicates Tracking 339492 as yet unmatched pairs. 62254 records in RAM.
INFO 2026-06-04 21:57:45 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 2s. Last read position: chr17:41,523,775
INFO 2026-06-04 21:57:45 MarkDuplicates Tracking 341280 as yet unmatched pairs. 64031 records in RAM.
INFO 2026-06-04 21:57:48 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 3s. Last read position: chr17:41,893,111
INFO 2026-06-04 21:57:48 MarkDuplicates Tracking 333756 as yet unmatched pairs. 56493 records in RAM.
INFO 2026-06-04 21:57:51 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr17:42,818,380
INFO 2026-06-04 21:57:51 MarkDuplicates Tracking 331133 as yet unmatched pairs. 53858 records in RAM.
INFO 2026-06-04 21:57:54 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr17:44,350,324
INFO 2026-06-04 21:57:54 MarkDuplicates Tracking 329025 as yet unmatched pairs. 51740 records in RAM.
INFO 2026-06-04 21:57:56 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:46,171,491
INFO 2026-06-04 21:57:56 MarkDuplicates Tracking 325889 as yet unmatched pairs. 48595 records in RAM.
INFO 2026-06-04 21:57:59 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr17:48,554,560
INFO 2026-06-04 21:57:59 MarkDuplicates Tracking 323340 as yet unmatched pairs. 46033 records in RAM.
INFO 2026-06-04 21:58:01 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,879
INFO 2026-06-04 21:58:01 MarkDuplicates Tracking 320937 as yet unmatched pairs. 43617 records in RAM.
INFO 2026-06-04 21:58:04 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,637
INFO 2026-06-04 21:58:04 MarkDuplicates Tracking 322569 as yet unmatched pairs. 45227 records in RAM.
INFO 2026-06-04 21:58:07 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr17:51,021,180
INFO 2026-06-04 21:58:07 MarkDuplicates Tracking 315037 as yet unmatched pairs. 37682 records in RAM.
INFO 2026-06-04 21:58:10 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 3s. Last read position: chr17:58,492,851
INFO 2026-06-04 21:58:10 MarkDuplicates Tracking 312594 as yet unmatched pairs. 35216 records in RAM.
INFO 2026-06-04 21:58:12 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr17:59,681,814
INFO 2026-06-04 21:58:12 MarkDuplicates Tracking 313269 as yet unmatched pairs. 35886 records in RAM.
INFO 2026-06-04 21:58:16 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 3s. Last read position: chr17:63,437,385
INFO 2026-06-04 21:58:16 MarkDuplicates Tracking 307635 as yet unmatched pairs. 30244 records in RAM.
INFO 2026-06-04 21:58:19 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr17:64,894,981
INFO 2026-06-04 21:58:19 MarkDuplicates Tracking 304536 as yet unmatched pairs. 27129 records in RAM.
INFO 2026-06-04 21:58:22 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 3s. Last read position: chr17:72,121,459
INFO 2026-06-04 21:58:22 MarkDuplicates Tracking 302643 as yet unmatched pairs. 25226 records in RAM.
INFO 2026-06-04 21:58:24 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr17:75,263,352
INFO 2026-06-04 21:58:24 MarkDuplicates Tracking 299851 as yet unmatched pairs. 22412 records in RAM.
INFO 2026-06-04 21:58:27 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr17:75,750,754
INFO 2026-06-04 21:58:27 MarkDuplicates Tracking 297470 as yet unmatched pairs. 20016 records in RAM.
INFO 2026-06-04 21:58:29 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr17:76,046,153
INFO 2026-06-04 21:58:29 MarkDuplicates Tracking 293693 as yet unmatched pairs. 16225 records in RAM.
INFO 2026-06-04 21:58:32 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr17:78,171,757
INFO 2026-06-04 21:58:32 MarkDuplicates Tracking 291701 as yet unmatched pairs. 14206 records in RAM.
INFO 2026-06-04 21:58:34 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr17:80,140,081
INFO 2026-06-04 21:58:34 MarkDuplicates Tracking 288426 as yet unmatched pairs. 10919 records in RAM.
INFO 2026-06-04 21:58:37 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr17:81,511,413
INFO 2026-06-04 21:58:37 MarkDuplicates Tracking 287468 as yet unmatched pairs. 9948 records in RAM.
INFO 2026-06-04 21:58:40 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr17:81,868,837
INFO 2026-06-04 21:58:40 MarkDuplicates Tracking 283276 as yet unmatched pairs. 5742 records in RAM.
INFO 2026-06-04 21:58:42 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr17:82,237,519
INFO 2026-06-04 21:58:42 MarkDuplicates Tracking 280012 as yet unmatched pairs. 2465 records in RAM.
INFO 2026-06-04 21:58:45 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr18:6,462,297
INFO 2026-06-04 21:58:45 MarkDuplicates Tracking 276545 as yet unmatched pairs. 15960 records in RAM.
INFO 2026-06-04 21:58:48 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 3s. Last read position: chr18:22,982,257
INFO 2026-06-04 21:58:48 MarkDuplicates Tracking 273750 as yet unmatched pairs. 13146 records in RAM.
INFO 2026-06-04 21:58:51 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 3s. Last read position: chr18:31,546,181
INFO 2026-06-04 21:58:51 MarkDuplicates Tracking 271908 as yet unmatched pairs. 11300 records in RAM.
INFO 2026-06-04 21:58:55 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 3s. Last read position: chr18:47,868,356
INFO 2026-06-04 21:58:55 MarkDuplicates Tracking 269010 as yet unmatched pairs. 8393 records in RAM.
INFO 2026-06-04 21:58:57 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr18:54,884,383
INFO 2026-06-04 21:58:57 MarkDuplicates Tracking 266382 as yet unmatched pairs. 5752 records in RAM.
INFO 2026-06-04 21:59:00 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 3s. Last read position: chr18:62,268,931
INFO 2026-06-04 21:59:00 MarkDuplicates Tracking 264621 as yet unmatched pairs. 3981 records in RAM.
INFO 2026-06-04 21:59:03 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 2s. Last read position: chr18:79,903,982
INFO 2026-06-04 21:59:03 MarkDuplicates Tracking 261148 as yet unmatched pairs. 494 records in RAM.
INFO 2026-06-04 21:59:08 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 4s. Last read position: chr19:799,413
INFO 2026-06-04 21:59:08 MarkDuplicates Tracking 260839 as yet unmatched pairs. 132854 records in RAM.
INFO 2026-06-04 21:59:11 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr19:1,271,621
INFO 2026-06-04 21:59:11 MarkDuplicates Tracking 256150 as yet unmatched pairs. 128156 records in RAM.
INFO 2026-06-04 21:59:14 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 3s. Last read position: chr19:1,923,129
INFO 2026-06-04 21:59:14 MarkDuplicates Tracking 252188 as yet unmatched pairs. 124179 records in RAM.
INFO 2026-06-04 21:59:17 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr19:3,054,010
INFO 2026-06-04 21:59:17 MarkDuplicates Tracking 249440 as yet unmatched pairs. 121421 records in RAM.
INFO 2026-06-04 21:59:20 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 3s. Last read position: chr19:4,327,351
INFO 2026-06-04 21:59:20 MarkDuplicates Tracking 245808 as yet unmatched pairs. 117784 records in RAM.
INFO 2026-06-04 21:59:22 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr19:5,789,474
INFO 2026-06-04 21:59:22 MarkDuplicates Tracking 242647 as yet unmatched pairs. 114613 records in RAM.
INFO 2026-06-04 21:59:25 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 3s. Last read position: chr19:7,447,054
INFO 2026-06-04 21:59:25 MarkDuplicates Tracking 239986 as yet unmatched pairs. 111943 records in RAM.
INFO 2026-06-04 21:59:28 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr19:8,545,683
INFO 2026-06-04 21:59:28 MarkDuplicates Tracking 236788 as yet unmatched pairs. 108730 records in RAM.
INFO 2026-06-04 21:59:33 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 4s. Last read position: chr19:10,635,503
INFO 2026-06-04 21:59:33 MarkDuplicates Tracking 234395 as yet unmatched pairs. 106330 records in RAM.
INFO 2026-06-04 21:59:35 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr19:11,178,345
INFO 2026-06-04 21:59:35 MarkDuplicates Tracking 231255 as yet unmatched pairs. 103184 records in RAM.
INFO 2026-06-04 21:59:38 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 3s. Last read position: chr19:12,734,433
INFO 2026-06-04 21:59:38 MarkDuplicates Tracking 229212 as yet unmatched pairs. 101137 records in RAM.
INFO 2026-06-04 21:59:41 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr19:13,927,200
INFO 2026-06-04 21:59:41 MarkDuplicates Tracking 226040 as yet unmatched pairs. 97954 records in RAM.
INFO 2026-06-04 21:59:45 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 3s. Last read position: chr19:15,117,965
INFO 2026-06-04 21:59:45 MarkDuplicates Tracking 223277 as yet unmatched pairs. 95182 records in RAM.
INFO 2026-06-04 21:59:48 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 3s. Last read position: chr19:16,525,440
INFO 2026-06-04 21:59:48 MarkDuplicates Tracking 220416 as yet unmatched pairs. 92315 records in RAM.
INFO 2026-06-04 21:59:51 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 3s. Last read position: chr19:17,862,925
INFO 2026-06-04 21:59:51 MarkDuplicates Tracking 225295 as yet unmatched pairs. 97187 records in RAM.
INFO 2026-06-04 21:59:54 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr19:18,899,533
INFO 2026-06-04 21:59:54 MarkDuplicates Tracking 214328 as yet unmatched pairs. 86215 records in RAM.
INFO 2026-06-04 21:59:57 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chr19:33,301,507
INFO 2026-06-04 21:59:57 MarkDuplicates Tracking 211487 as yet unmatched pairs. 83367 records in RAM.
INFO 2026-06-04 21:59:59 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 2s. Last read position: chr19:35,166,272
INFO 2026-06-04 21:59:59 MarkDuplicates Tracking 210614 as yet unmatched pairs. 82490 records in RAM.
INFO 2026-06-04 22:00:02 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 3s. Last read position: chr19:36,142,719
INFO 2026-06-04 22:00:02 MarkDuplicates Tracking 210007 as yet unmatched pairs. 81879 records in RAM.
INFO 2026-06-04 22:00:05 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chr19:38,705,010
INFO 2026-06-04 22:00:05 MarkDuplicates Tracking 206940 as yet unmatched pairs. 78804 records in RAM.
INFO 2026-06-04 22:00:09 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 3s. Last read position: chr19:38,806,577
INFO 2026-06-04 22:00:09 MarkDuplicates Tracking 207086 as yet unmatched pairs. 78943 records in RAM.
INFO 2026-06-04 22:00:11 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr19:39,453,452
INFO 2026-06-04 22:00:11 MarkDuplicates Tracking 197560 as yet unmatched pairs. 69412 records in RAM.
INFO 2026-06-04 22:00:14 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 3s. Last read position: chr19:39,872,460
INFO 2026-06-04 22:00:14 MarkDuplicates Tracking 200137 as yet unmatched pairs. 71983 records in RAM.
INFO 2026-06-04 22:00:17 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr19:39,876,715
INFO 2026-06-04 22:00:17 MarkDuplicates Tracking 192744 as yet unmatched pairs. 64588 records in RAM.
INFO 2026-06-04 22:00:19 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr19:39,877,925
INFO 2026-06-04 22:00:19 MarkDuplicates Tracking 201576 as yet unmatched pairs. 73419 records in RAM.
INFO 2026-06-04 22:00:22 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 3s. Last read position: chr19:39,883,336
INFO 2026-06-04 22:00:22 MarkDuplicates Tracking 218926 as yet unmatched pairs. 90766 records in RAM.
INFO 2026-06-04 22:00:25 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr19:39,886,365
INFO 2026-06-04 22:00:25 MarkDuplicates Tracking 215292 as yet unmatched pairs. 87127 records in RAM.
INFO 2026-06-04 22:00:28 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr19:39,889,994
INFO 2026-06-04 22:00:28 MarkDuplicates Tracking 209103 as yet unmatched pairs. 80932 records in RAM.
INFO 2026-06-04 22:00:30 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr19:39,892,929
INFO 2026-06-04 22:00:30 MarkDuplicates Tracking 196528 as yet unmatched pairs. 68354 records in RAM.
INFO 2026-06-04 22:00:33 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 3s. Last read position: chr19:39,894,000
INFO 2026-06-04 22:00:33 MarkDuplicates Tracking 199152 as yet unmatched pairs. 70967 records in RAM.
INFO 2026-06-04 22:00:35 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr19:39,899,642
INFO 2026-06-04 22:00:35 MarkDuplicates Tracking 186807 as yet unmatched pairs. 58618 records in RAM.
INFO 2026-06-04 22:00:38 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr19:39,906,080
INFO 2026-06-04 22:00:38 MarkDuplicates Tracking 180192 as yet unmatched pairs. 51993 records in RAM.
INFO 2026-06-04 22:00:41 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr19:39,918,411
INFO 2026-06-04 22:00:41 MarkDuplicates Tracking 184474 as yet unmatched pairs. 56269 records in RAM.
INFO 2026-06-04 22:00:45 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 4s. Last read position: chr19:39,928,170
INFO 2026-06-04 22:00:45 MarkDuplicates Tracking 181505 as yet unmatched pairs. 53297 records in RAM.
INFO 2026-06-04 22:00:47 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr19:41,272,222
INFO 2026-06-04 22:00:47 MarkDuplicates Tracking 166399 as yet unmatched pairs. 38179 records in RAM.
INFO 2026-06-04 22:00:50 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 2s. Last read position: chr19:41,715,060
INFO 2026-06-04 22:00:50 MarkDuplicates Tracking 173766 as yet unmatched pairs. 45541 records in RAM.
INFO 2026-06-04 22:00:52 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr19:41,719,953
INFO 2026-06-04 22:00:52 MarkDuplicates Tracking 184752 as yet unmatched pairs. 56524 records in RAM.
INFO 2026-06-04 22:00:55 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 3s. Last read position: chr19:41,869,728
INFO 2026-06-04 22:00:55 MarkDuplicates Tracking 159050 as yet unmatched pairs. 30820 records in RAM.
INFO 2026-06-04 22:00:58 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 2s. Last read position: chr19:42,528,350
INFO 2026-06-04 22:00:58 MarkDuplicates Tracking 156150 as yet unmatched pairs. 27914 records in RAM.
INFO 2026-06-04 22:01:02 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 4s. Last read position: chr19:45,385,900
INFO 2026-06-04 22:01:02 MarkDuplicates Tracking 153357 as yet unmatched pairs. 25117 records in RAM.
INFO 2026-06-04 22:01:04 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr19:46,839,552
INFO 2026-06-04 22:01:04 MarkDuplicates Tracking 151620 as yet unmatched pairs. 23372 records in RAM.
INFO 2026-06-04 22:01:07 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr19:48,615,386
INFO 2026-06-04 22:01:07 MarkDuplicates Tracking 150533 as yet unmatched pairs. 22278 records in RAM.
INFO 2026-06-04 22:01:09 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:49,487,623
INFO 2026-06-04 22:01:09 MarkDuplicates Tracking 148274 as yet unmatched pairs. 20016 records in RAM.
INFO 2026-06-04 22:01:12 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr19:49,805,736
INFO 2026-06-04 22:01:12 MarkDuplicates Tracking 141733 as yet unmatched pairs. 13473 records in RAM.
INFO 2026-06-04 22:01:15 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 2s. Last read position: chr19:50,482,568
INFO 2026-06-04 22:01:15 MarkDuplicates Tracking 139496 as yet unmatched pairs. 11229 records in RAM.
INFO 2026-06-04 22:01:18 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 3s. Last read position: chr19:54,161,129
INFO 2026-06-04 22:01:18 MarkDuplicates Tracking 136317 as yet unmatched pairs. 8046 records in RAM.
INFO 2026-06-04 22:01:21 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chr19:55,385,946
INFO 2026-06-04 22:01:21 MarkDuplicates Tracking 134090 as yet unmatched pairs. 5809 records in RAM.
INFO 2026-06-04 22:01:24 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 3s. Last read position: chr19:57,909,289
INFO 2026-06-04 22:01:24 MarkDuplicates Tracking 130142 as yet unmatched pairs. 1858 records in RAM.
INFO 2026-06-04 22:01:27 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr20:1,372,209
INFO 2026-06-04 22:01:27 MarkDuplicates Tracking 129373 as yet unmatched pairs. 35845 records in RAM.
INFO 2026-06-04 22:01:29 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chr20:6,119,401
INFO 2026-06-04 22:01:29 MarkDuplicates Tracking 125214 as yet unmatched pairs. 31676 records in RAM.
INFO 2026-06-04 22:01:32 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chr20:17,659,133
INFO 2026-06-04 22:01:32 MarkDuplicates Tracking 121961 as yet unmatched pairs. 28418 records in RAM.
INFO 2026-06-04 22:01:35 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 3s. Last read position: chr20:23,635,356
INFO 2026-06-04 22:01:35 MarkDuplicates Tracking 121229 as yet unmatched pairs. 27680 records in RAM.
INFO 2026-06-04 22:01:38 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr20:31,527,566
INFO 2026-06-04 22:01:38 MarkDuplicates Tracking 117267 as yet unmatched pairs. 23712 records in RAM.
INFO 2026-06-04 22:01:42 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 3s. Last read position: chr20:34,750,059
INFO 2026-06-04 22:01:42 MarkDuplicates Tracking 114003 as yet unmatched pairs. 20444 records in RAM.
INFO 2026-06-04 22:01:44 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 2s. Last read position: chr20:36,544,858
INFO 2026-06-04 22:01:44 MarkDuplicates Tracking 111318 as yet unmatched pairs. 17756 records in RAM.
INFO 2026-06-04 22:01:47 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 3s. Last read position: chr20:43,702,516
INFO 2026-06-04 22:01:47 MarkDuplicates Tracking 108785 as yet unmatched pairs. 15208 records in RAM.
INFO 2026-06-04 22:01:49 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chr20:45,470,443
INFO 2026-06-04 22:01:49 MarkDuplicates Tracking 106773 as yet unmatched pairs. 13188 records in RAM.
INFO 2026-06-04 22:01:52 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 3s. Last read position: chr20:49,248,063
INFO 2026-06-04 22:01:52 MarkDuplicates Tracking 103533 as yet unmatched pairs. 9943 records in RAM.
INFO 2026-06-04 22:01:55 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chr20:57,392,668
INFO 2026-06-04 22:01:55 MarkDuplicates Tracking 100994 as yet unmatched pairs. 7396 records in RAM.
INFO 2026-06-04 22:01:59 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 4s. Last read position: chr20:62,307,769
INFO 2026-06-04 22:01:59 MarkDuplicates Tracking 98229 as yet unmatched pairs. 4624 records in RAM.
INFO 2026-06-04 22:02:01 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr20:63,697,388
INFO 2026-06-04 22:02:01 MarkDuplicates Tracking 95660 as yet unmatched pairs. 2041 records in RAM.
INFO 2026-06-04 22:02:03 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 2s. Last read position: chr21:8,253,425
INFO 2026-06-04 22:02:03 MarkDuplicates Tracking 92741 as yet unmatched pairs. 17417 records in RAM.
INFO 2026-06-04 22:02:06 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr21:8,442,596
INFO 2026-06-04 22:02:06 MarkDuplicates Tracking 92323 as yet unmatched pairs. 16991 records in RAM.
INFO 2026-06-04 22:02:08 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chr21:25,976,006
INFO 2026-06-04 22:02:08 MarkDuplicates Tracking 93237 as yet unmatched pairs. 17899 records in RAM.
INFO 2026-06-04 22:02:11 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 3s. Last read position: chr21:33,421,637
INFO 2026-06-04 22:02:11 MarkDuplicates Tracking 88413 as yet unmatched pairs. 13070 records in RAM.
INFO 2026-06-04 22:02:14 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chr21:37,166,375
INFO 2026-06-04 22:02:14 MarkDuplicates Tracking 85887 as yet unmatched pairs. 10533 records in RAM.
INFO 2026-06-04 22:02:18 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 4s. Last read position: chr21:41,473,431
INFO 2026-06-04 22:02:18 MarkDuplicates Tracking 86703 as yet unmatched pairs. 11347 records in RAM.
INFO 2026-06-04 22:02:20 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr21:43,094,756
INFO 2026-06-04 22:02:20 MarkDuplicates Tracking 79674 as yet unmatched pairs. 4313 records in RAM.
INFO 2026-06-04 22:02:23 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 2s. Last read position: chr21:46,111,504
INFO 2026-06-04 22:02:23 MarkDuplicates Tracking 77116 as yet unmatched pairs. 1755 records in RAM.
INFO 2026-06-04 22:02:26 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 2s. Last read position: chr22:19,475,508
INFO 2026-06-04 22:02:26 MarkDuplicates Tracking 74183 as yet unmatched pairs. 34772 records in RAM.
INFO 2026-06-04 22:02:29 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 3s. Last read position: chr22:23,181,326
INFO 2026-06-04 22:02:29 MarkDuplicates Tracking 72198 as yet unmatched pairs. 32781 records in RAM.
INFO 2026-06-04 22:02:32 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 2s. Last read position: chr22:24,177,609
INFO 2026-06-04 22:02:32 MarkDuplicates Tracking 67945 as yet unmatched pairs. 28524 records in RAM.
INFO 2026-06-04 22:02:36 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 4s. Last read position: chr22:29,287,071
INFO 2026-06-04 22:02:36 MarkDuplicates Tracking 68635 as yet unmatched pairs. 29207 records in RAM.
INFO 2026-06-04 22:02:38 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chr22:30,906,198
INFO 2026-06-04 22:02:38 MarkDuplicates Tracking 62440 as yet unmatched pairs. 23002 records in RAM.
INFO 2026-06-04 22:02:41 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 2s. Last read position: chr22:36,265,442
INFO 2026-06-04 22:02:41 MarkDuplicates Tracking 60302 as yet unmatched pairs. 20856 records in RAM.
INFO 2026-06-04 22:02:44 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chr22:36,517,346
INFO 2026-06-04 22:02:44 MarkDuplicates Tracking 57662 as yet unmatched pairs. 18210 records in RAM.
INFO 2026-06-04 22:02:47 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr22:37,922,066
INFO 2026-06-04 22:02:47 MarkDuplicates Tracking 54194 as yet unmatched pairs. 14737 records in RAM.
INFO 2026-06-04 22:02:50 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 2s. Last read position: chr22:40,019,241
INFO 2026-06-04 22:02:50 MarkDuplicates Tracking 51538 as yet unmatched pairs. 12069 records in RAM.
INFO 2026-06-04 22:02:53 MarkDuplicates Read 656,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 3s. Last read position: chr22:41,636,632
INFO 2026-06-04 22:02:53 MarkDuplicates Tracking 49366 as yet unmatched pairs. 9896 records in RAM.
INFO 2026-06-04 22:02:56 MarkDuplicates Read 657,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr22:43,972,959
INFO 2026-06-04 22:02:56 MarkDuplicates Tracking 46068 as yet unmatched pairs. 6596 records in RAM.
INFO 2026-06-04 22:02:59 MarkDuplicates Read 658,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 2s. Last read position: chr22:50,276,661
INFO 2026-06-04 22:02:59 MarkDuplicates Tracking 44298 as yet unmatched pairs. 4822 records in RAM.
INFO 2026-06-04 22:03:01 MarkDuplicates Read 659,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 2s. Last read position: chr22:50,721,667
INFO 2026-06-04 22:03:01 MarkDuplicates Tracking 39660 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-04 22:03:04 MarkDuplicates Read 660,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 3s. Last read position: chrX:13,746,870
INFO 2026-06-04 22:03:04 MarkDuplicates Tracking 36955 as yet unmatched pairs. 33057 records in RAM.
INFO 2026-06-04 22:03:07 MarkDuplicates Read 661,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 2s. Last read position: chrX:23,836,845
INFO 2026-06-04 22:03:07 MarkDuplicates Tracking 34570 as yet unmatched pairs. 30663 records in RAM.
INFO 2026-06-04 22:03:11 MarkDuplicates Read 662,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 3s. Last read position: chrX:41,196,613
INFO 2026-06-04 22:03:11 MarkDuplicates Tracking 32504 as yet unmatched pairs. 28595 records in RAM.
INFO 2026-06-04 22:03:13 MarkDuplicates Read 663,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 2s. Last read position: chrX:47,209,622
INFO 2026-06-04 22:03:13 MarkDuplicates Tracking 30703 as yet unmatched pairs. 26790 records in RAM.
INFO 2026-06-04 22:03:16 MarkDuplicates Read 664,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 3s. Last read position: chrX:49,038,383
INFO 2026-06-04 22:03:16 MarkDuplicates Tracking 27344 as yet unmatched pairs. 23431 records in RAM.
INFO 2026-06-04 22:03:19 MarkDuplicates Read 665,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 2s. Last read position: chrX:53,585,161
INFO 2026-06-04 22:03:19 MarkDuplicates Tracking 24217 as yet unmatched pairs. 20302 records in RAM.
INFO 2026-06-04 22:03:22 MarkDuplicates Read 666,000,000 records. Elapsed time: 00:24:07s. Time for last 1,000,000: 3s. Last read position: chrX:70,286,941
INFO 2026-06-04 22:03:22 MarkDuplicates Tracking 21644 as yet unmatched pairs. 17728 records in RAM.
INFO 2026-06-04 22:03:25 MarkDuplicates Read 667,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 3s. Last read position: chrX:72,273,949
INFO 2026-06-04 22:03:25 MarkDuplicates Tracking 23383 as yet unmatched pairs. 19466 records in RAM.
INFO 2026-06-04 22:03:29 MarkDuplicates Read 668,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 3s. Last read position: chrX:85,306,219
INFO 2026-06-04 22:03:29 MarkDuplicates Tracking 18116 as yet unmatched pairs. 14198 records in RAM.
INFO 2026-06-04 22:03:31 MarkDuplicates Read 669,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chrX:106,928,757
INFO 2026-06-04 22:03:31 MarkDuplicates Tracking 17144 as yet unmatched pairs. 13226 records in RAM.
INFO 2026-06-04 22:03:34 MarkDuplicates Read 670,000,000 records. Elapsed time: 00:24:19s. Time for last 1,000,000: 2s. Last read position: chrX:120,560,079
INFO 2026-06-04 22:03:34 MarkDuplicates Tracking 12559 as yet unmatched pairs. 8641 records in RAM.
INFO 2026-06-04 22:03:36 MarkDuplicates Read 671,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chrX:148,052,214
INFO 2026-06-04 22:03:36 MarkDuplicates Tracking 9626 as yet unmatched pairs. 5708 records in RAM.
INFO 2026-06-04 22:03:39 MarkDuplicates Read 672,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 2s. Last read position: chrX:154,019,011
INFO 2026-06-04 22:03:39 MarkDuplicates Tracking 7856 as yet unmatched pairs. 3936 records in RAM.
INFO 2026-06-04 22:03:41 MarkDuplicates Read 673,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 2s. Last read position: chrX:155,382,893
INFO 2026-06-04 22:03:41 MarkDuplicates Tracking 4049 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-04 22:03:43 MarkDuplicates Read 674,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 2s. Last read position: GL000220.1:116,863
INFO 2026-06-04 22:03:43 MarkDuplicates Tracking 1977 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-04 22:03:46 MarkDuplicates Read 675,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 2s. Last read position: KI270733.1:132,341
INFO 2026-06-04 22:03:46 MarkDuplicates Tracking 1158 as yet unmatched pairs. 1147 records in RAM.
INFO 2026-06-04 22:03:48 MarkDuplicates Read 675969735 records. 0 pairs never matched.
INFO 2026-06-04 22:04:55 MarkDuplicates After buildSortedReadEndLists freeMemory: 58205353696; totalMemory: 83114328064; maxMemory: 127137742848
INFO 2026-06-04 22:04:55 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-04 22:05:08 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-04 22:05:55 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-04 22:05:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,363
INFO 2026-06-04 22:05:56 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-04 22:05:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,223
INFO 2026-06-04 22:05:57 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-04 22:05:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,906
INFO 2026-06-04 22:05:59 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-04 22:05:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,817
INFO 2026-06-04 22:05:59 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-04 22:05:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,570
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1861
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 2023
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,449
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,393
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,645
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1680
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,489
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1712
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,287
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,433
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,816
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1413
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,617
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1605
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,254
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,141
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder Large duplicate set. size = 1375
INFO 2026-06-04 22:06:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,167
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,840
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder Large duplicate set. size = 1229
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,008
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder Large duplicate set. size = 1520
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,430
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,609
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,989
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-04 22:06:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,799
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1392
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,656
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,739
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 2054
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,134
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,080
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1870
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,640
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,636
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1459
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,887
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,503
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,690
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,710
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,988
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,345
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,909
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,896
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,670
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,165
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1450
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,474
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1853
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,572
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,472
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1663
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,307
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 2016
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,922
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,536
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1510
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,121
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,931
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,735
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1729
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,446
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,392
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,208
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-04 22:06:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,589
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1348
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,347
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,091
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,605
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,708
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 2321
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,424
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,346
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,370
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1716
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,832
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1640
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,680
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,747
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-04 22:06:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,087
INFO 2026-06-04 22:06:14 OpticalDuplicateFinder Large duplicate set. size = 1171
INFO 2026-06-04 22:06:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,373
INFO 2026-06-04 22:06:14 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-04 22:06:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,071
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,911
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,838
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,550
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder Large duplicate set. size = 2896
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,090
INFO 2026-06-04 22:06:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,997
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 2092
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,074
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,345
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1837
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,395
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1634
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,282
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,641
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,189
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1928
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,241
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,548
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-04 22:06:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,321
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,195
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1922
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1618
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,933
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,185
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,605
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1893
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,516
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-04 22:06:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,918
INFO 2026-06-04 22:06:36 OpticalDuplicateFinder Large duplicate set. size = 2850
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,766
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,464
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder Large duplicate set. size = 3728
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,280
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,076
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,421
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,705
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder Large duplicate set. size = 1753
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,521
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder Large duplicate set. size = 1792
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,766
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder Large duplicate set. size = 2047
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,132
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,595
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder Large duplicate set. size = 1931
INFO 2026-06-04 22:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,430
INFO 2026-06-04 22:06:38 OpticalDuplicateFinder Large duplicate set. size = 1468
INFO 2026-06-04 22:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,471
INFO 2026-06-04 22:06:38 OpticalDuplicateFinder Large duplicate set. size = 1592
INFO 2026-06-04 22:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,152
INFO 2026-06-04 22:06:38 OpticalDuplicateFinder Large duplicate set. size = 1496
INFO 2026-06-04 22:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,631
INFO 2026-06-04 22:06:46 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-04 22:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,225
INFO 2026-06-04 22:06:46 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-04 22:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,909
INFO 2026-06-04 22:06:46 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-04 22:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,925
INFO 2026-06-04 22:06:50 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-04 22:06:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,991
INFO 2026-06-04 22:06:54 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-04 22:06:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,524
INFO 2026-06-04 22:06:57 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-04 22:06:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,101
INFO 2026-06-04 22:06:57 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-04 22:06:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,113
INFO 2026-06-04 22:07:02 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-04 22:07:03 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-04 22:09:02 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-04 22:09:17 MarkDuplicates After generateDuplicateIndexes freeMemory: 40286948600; totalMemory: 57512296448; maxMemory: 127137742848
INFO 2026-06-04 22:09:17 MarkDuplicates Marking 257668034 records as duplicates.
INFO 2026-06-04 22:09:17 MarkDuplicates Found 15590500 optical duplicate clusters.
INFO 2026-06-04 22:09:17 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-04 22:09:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:39s. Time for last 10,000,000: 39s. Last read position: chr1:26,280,188
INFO 2026-06-04 22:10:36 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 39s. Last read position: chr1:53,197,010
INFO 2026-06-04 22:11:16 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 40s. Last read position: chr1:120,069,342
INFO 2026-06-04 22:11:56 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 39s. Last read position: chr1:156,311,174
INFO 2026-06-04 22:12:36 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:03:18s. Time for last 10,000,000: 39s. Last read position: chr1:204,257,722
INFO 2026-06-04 22:13:15 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 39s. Last read position: chr1:235,113,892
INFO 2026-06-04 22:13:55 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 39s. Last read position: chr2:32,916,406
INFO 2026-06-04 22:14:35 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 40s. Last read position: chr2:86,207,247
INFO 2026-06-04 22:15:11 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 36s. Last read position: chr2:171,707,337
INFO 2026-06-04 22:15:50 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:06:32s. Time for last 10,000,000: 38s. Last read position: chr2:231,461,916
INFO 2026-06-04 22:16:29 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 39s. Last read position: chr3:48,467,534
INFO 2026-06-04 22:17:08 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 38s. Last read position: chr3:124,923,535
INFO 2026-06-04 22:17:44 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 36s. Last read position: chr3:195,778,921
INFO 2026-06-04 22:18:24 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:09:06s. Time for last 10,000,000: 39s. Last read position: chr4:55,892,707
INFO 2026-06-04 22:19:04 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 40s. Last read position: chr4:182,891,419
INFO 2026-06-04 22:19:43 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:10:26s. Time for last 10,000,000: 39s. Last read position: chr5:96,750,587
INFO 2026-06-04 22:20:18 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 35s. Last read position: chr5:154,799,890
INFO 2026-06-04 22:20:53 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 34s. Last read position: chr6:21,595,335
INFO 2026-06-04 22:21:28 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 34s. Last read position: chr6:34,417,464
INFO 2026-06-04 22:22:03 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:12:45s. Time for last 10,000,000: 35s. Last read position: chr6:130,858,208
INFO 2026-06-04 22:22:38 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 35s. Last read position: chr7:16,689,841
INFO 2026-06-04 22:23:15 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 37s. Last read position: chr7:99,185,078
INFO 2026-06-04 22:23:50 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:14:33s. Time for last 10,000,000: 35s. Last read position: chr7:100,993,907
INFO 2026-06-04 22:24:27 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:15:10s. Time for last 10,000,000: 36s. Last read position: chr7:100,996,388
INFO 2026-06-04 22:25:05 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 37s. Last read position: chr7:100,998,080
INFO 2026-06-04 22:25:41 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:16:24s. Time for last 10,000,000: 36s. Last read position: chr7:100,999,817
INFO 2026-06-04 22:26:17 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:17:00s. Time for last 10,000,000: 35s. Last read position: chr7:101,001,512
INFO 2026-06-04 22:26:54 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:17:37s. Time for last 10,000,000: 37s. Last read position: chr7:101,004,275
INFO 2026-06-04 22:27:31 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:18:14s. Time for last 10,000,000: 37s. Last read position: chr7:151,214,963
INFO 2026-06-04 22:28:10 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:18:52s. Time for last 10,000,000: 38s. Last read position: chr8:94,177,672
INFO 2026-06-04 22:28:47 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:19:30s. Time for last 10,000,000: 37s. Last read position: chr8:143,861,680
INFO 2026-06-04 22:29:23 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:20:05s. Time for last 10,000,000: 35s. Last read position: chr9:34,647,152
INFO 2026-06-04 22:30:00 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:20:42s. Time for last 10,000,000: 36s. Last read position: chr9:127,450,752
INFO 2026-06-04 22:30:37 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:21:20s. Time for last 10,000,000: 37s. Last read position: chr10:24,585,752
INFO 2026-06-04 22:31:16 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:21:58s. Time for last 10,000,000: 38s. Last read position: chr10:100,523,857
INFO 2026-06-04 22:31:54 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:22:36s. Time for last 10,000,000: 38s. Last read position: chr11:884,143
INFO 2026-06-04 22:32:30 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:23:13s. Time for last 10,000,000: 36s. Last read position: chr11:1,188,998
INFO 2026-06-04 22:32:59 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:23:41s. Time for last 10,000,000: 28s. Last read position: chr11:1,244,234
INFO 2026-06-04 22:33:24 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:24:07s. Time for last 10,000,000: 25s. Last read position: chr11:1,250,017
INFO 2026-06-04 22:33:51 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:24:34s. Time for last 10,000,000: 27s. Last read position: chr11:46,278,177
INFO 2026-06-04 22:34:18 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:25:00s. Time for last 10,000,000: 26s. Last read position: chr11:65,210,843
INFO 2026-06-04 22:34:44 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:25:27s. Time for last 10,000,000: 26s. Last read position: chr11:118,763,250
INFO 2026-06-04 22:35:08 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:25:51s. Time for last 10,000,000: 23s. Last read position: chr12:32,399,723
INFO 2026-06-04 22:35:29 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:26:12s. Time for last 10,000,000: 21s. Last read position: chr12:57,099,863
INFO 2026-06-04 22:35:47 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:26:29s. Time for last 10,000,000: 17s. Last read position: chr12:115,996,597
INFO 2026-06-04 22:36:04 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:26:47s. Time for last 10,000,000: 17s. Last read position: chr13:53,042,075
INFO 2026-06-04 22:36:21 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:27:04s. Time for last 10,000,000: 17s. Last read position: chr14:49,583,638
INFO 2026-06-04 22:36:39 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:27:22s. Time for last 10,000,000: 17s. Last read position: chr14:102,968,471
INFO 2026-06-04 22:36:57 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:27:39s. Time for last 10,000,000: 17s. Last read position: chr15:45,104,326
INFO 2026-06-04 22:37:14 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:27:57s. Time for last 10,000,000: 17s. Last read position: chr15:82,540,007
INFO 2026-06-04 22:37:32 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:28:14s. Time for last 10,000,000: 17s. Last read position: chr16:14,627,331
INFO 2026-06-04 22:37:49 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:28:32s. Time for last 10,000,000: 17s. Last read position: chr16:30,555,965
INFO 2026-06-04 22:38:06 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:28:49s. Time for last 10,000,000: 17s. Last read position: chr16:88,721,311
INFO 2026-06-04 22:38:24 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:29:06s. Time for last 10,000,000: 17s. Last read position: chr17:17,907,504
INFO 2026-06-04 22:38:41 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:29:24s. Time for last 10,000,000: 17s. Last read position: chr17:41,893,111
INFO 2026-06-04 22:38:59 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:29:41s. Time for last 10,000,000: 17s. Last read position: chr17:63,437,385
INFO 2026-06-04 22:39:16 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:29:59s. Time for last 10,000,000: 17s. Last read position: chr17:82,237,519
INFO 2026-06-04 22:39:33 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:30:16s. Time for last 10,000,000: 17s. Last read position: chr19:1,923,129
INFO 2026-06-04 22:39:51 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:30:33s. Time for last 10,000,000: 17s. Last read position: chr19:15,117,965
INFO 2026-06-04 22:40:08 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:30:51s. Time for last 10,000,000: 17s. Last read position: chr19:39,872,460
INFO 2026-06-04 22:40:25 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:31:08s. Time for last 10,000,000: 16s. Last read position: chr19:39,918,411
INFO 2026-06-04 22:40:42 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:31:25s. Time for last 10,000,000: 17s. Last read position: chr19:49,487,623
INFO 2026-06-04 22:41:03 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:31:46s. Time for last 10,000,000: 21s. Last read position: chr20:31,527,566
INFO 2026-06-04 22:41:28 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:32:10s. Time for last 10,000,000: 24s. Last read position: chr21:8,442,596
INFO 2026-06-04 22:41:48 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:32:31s. Time for last 10,000,000: 20s. Last read position: chr22:29,287,071
INFO 2026-06-04 22:42:08 MarkDuplicates Written 660,000,000 records. Elapsed time: 00:32:51s. Time for last 10,000,000: 19s. Last read position: chrX:13,746,870
INFO 2026-06-04 22:42:29 MarkDuplicates Written 670,000,000 records. Elapsed time: 00:33:11s. Time for last 10,000,000: 20s. Last read position: chrX:120,560,079
INFO 2026-06-04 22:42:50 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-04 22:42:50 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-04 22:42:50 MarkDuplicates Getting Memory Stats.
INFO 2026-06-04 22:42:51 MarkDuplicates Before output close freeMemory: 202011600; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-04 22:42:51 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-04 22:42:51 MarkDuplicates After output close freeMemory: 104065024; totalMemory: 134217728; maxMemory: 127137742848
[Thu Jun 04 22:42:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 63.66 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory