Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/3e4244ed81bb9a488fe181dc0d74d1/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2ff3a1aa41330e412dbb6d481f4b06/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2ff3a1aa41330e412dbb6d481f4b06/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a5f6fb2af18dd9c696cbd975302694/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16053139) splicing reads. 262889 splicing junctions. 189947 known splicing junctions. 72942 novel splicing junctions.
sampling 10% (32106278) splicing reads. 320560 splicing junctions. 202918 known splicing junctions. 117642 novel splicing junctions.
sampling 15% (48159417) splicing reads. 362246 splicing junctions. 210090 known splicing junctions. 152156 novel splicing junctions.
sampling 20% (64212557) splicing reads. 395427 splicing junctions. 214832 known splicing junctions. 180595 novel splicing junctions.
sampling 25% (80265696) splicing reads. 423144 splicing junctions. 218300 known splicing junctions. 204844 novel splicing junctions.
sampling 30% (96318835) splicing reads. 446586 splicing junctions. 220959 known splicing junctions. 225627 novel splicing junctions.
sampling 35% (112371975) splicing reads. 467191 splicing junctions. 223127 known splicing junctions. 244064 novel splicing junctions.
sampling 40% (128425114) splicing reads. 485419 splicing junctions. 224922 known splicing junctions. 260497 novel splicing junctions.
sampling 45% (144478253) splicing reads. 501424 splicing junctions. 226424 known splicing junctions. 275000 novel splicing junctions.
sampling 50% (160531393) splicing reads. 515630 splicing junctions. 227658 known splicing junctions. 287972 novel splicing junctions.
sampling 55% (176584532) splicing reads. 528296 splicing junctions. 228707 known splicing junctions. 299589 novel splicing junctions.
sampling 60% (192637671) splicing reads. 539453 splicing junctions. 229576 known splicing junctions. 309877 novel splicing junctions.
sampling 65% (208690810) splicing reads. 549386 splicing junctions. 230326 known splicing junctions. 319060 novel splicing junctions.
sampling 70% (224743950) splicing reads. 558306 splicing junctions. 230979 known splicing junctions. 327327 novel splicing junctions.
sampling 75% (240797089) splicing reads. 565999 splicing junctions. 231569 known splicing junctions. 334430 novel splicing junctions.
sampling 80% (256850228) splicing reads. 572743 splicing junctions. 232138 known splicing junctions. 340605 novel splicing junctions.
sampling 85% (272903368) splicing reads. 578608 splicing junctions. 232604 known splicing junctions. 346004 novel splicing junctions.
sampling 90% (288956507) splicing reads. 583466 splicing junctions. 232981 known splicing junctions. 350485 novel splicing junctions.
sampling 95% (305009646) splicing reads. 587540 splicing junctions. 233282 known splicing junctions. 354258 novel splicing junctions.
sampling 100% (321062786) splicing reads. 590834 splicing junctions. 233527 known splicing junctions. 357307 novel splicing junctions.
null device 
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