Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/30eb1a40645601b2d401a333f1c7b5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/bbe7cb6233cd21d7dff8048ef069e3/kallisto
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/30eb1a40645601b2d401a333f1c7b5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/37bc4fae3229c2395b74f3eca61f4c/659_8h-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/37bc4fae3229c2395b74f3eca61f4c/659_8h-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)


[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 659_8h-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
                             659_8h-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ... done
[quant] processed 37,008 reads, 1,695 reads pseudoaligned
[quant] estimated average fragment length: 88.71
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 453 rounds