Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/9d6c668f336dbb64477b78f2fb29ff/659_bGc-T1-TRNA-1_B23MHV2LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/05534d7cbe9dc915755df44634abbe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/05534d7cbe9dc915755df44634abbe/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  659_bGc-T1-TRNA-1_B23MHV2LT4_1: vaf_p90=0.999101 -> CONTAMINATED (~0.0%)

Output saved to: 659_bGc-T1-TRNA-1_B23MHV2LT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated