Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/013d97db356b414aa7a5ffc15a6406/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/8f46a634e3623b0538cd999c36f9a3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/8f46a634e3623b0538cd999c36f9a3/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_HD789_02_RNA_0014_B23MHV2LT4_1: vaf_p90=0.709741 -> CONTAMINATED (~62.4%)

Output saved to: FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated