Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/03a2a7995f1f9a3967d4a5989e928d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/5e6db1165b7fd12c35ab76c4569de3/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/03a2a7995f1f9a3967d4a5989e928d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/282e3130ec2b5936f2c532e47d0011/659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1