Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/26d112ea6f3e5ad7f143c44ab7e536/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/d33bc63f9d672642cc5d74171216f1/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/26d112ea6f3e5ad7f143c44ab7e536/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/c8d6e2baece2b1cdc4db5c596e034e/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1