Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/723837a8534807880f145053b24741/659_bR4-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/714a79448f8f9eb899855e8a34fad4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/714a79448f8f9eb899855e8a34fad4/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory