.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (NTC_0001_0001_B23MHV2LT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/5b1a567b52b5114b2dcdb9ae8715a8/.command.sh
Size: 183 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (NTC_0001_0001_B23MHV2LT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "NTC_0001_0001_B23MHV2LT4_2.md.bam" > NTC_0001_0001_B23MHV2LT4_2_full_bam_saturation_values.txt