Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/d9f35a84c74eca73f1d6f346f6701a/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/0dc6cd9b9b745b6e151956c5bf4bb1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/0dc6cd9b9b745b6e151956c5bf4bb1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a15f0a3173a89e99e0e7a9b36c32a0/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 336039954
[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	336039954
Known Splicing Events:	333585537
Partial Novel Splicing Events:	1498872
Novel Splicing Events:	781779
Filtered Splicing Events:	173766

Total splicing  Junctions:	587239
Known Splicing Junctions:	281574
Partial Novel Splicing Junctions:	167522
Novel Splicing Junctions:	138143

===================================================================
Create BED file ...
Create Interact file ...