File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/564b9063183c46a8ee6b41e9692b1a/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-04T19:32:19Z thread 423 Sample sheet being processed by common lib? Yes
2026-06-04T19:32:19Z thread 423 SampleSheet Settings: 
2026-06-04T19:32:19Z thread 423   FastqCompressionFormat = gzip
2026-06-04T19:32:19Z thread 423   NoLaneSplitting = FALSE
2026-06-04T19:32:19Z thread 423   OverrideCycles = Y151;I10;I10;Y151
2026-06-04T19:32:19Z thread 423   SoftwareVersion = 4.3.6
2026-06-04T19:32:19Z thread 423 
2026-06-04T19:32:19Z thread 423 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-04T19:32:19Z thread 423 shared-thread-linux-native-asio output is disabled
2026-06-04T19:32:19Z thread 423 bcl-convert Version 4.4.6
2026-06-04T19:32:19Z thread 423 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-04T19:32:19Z thread 423 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-04T19:32:19Z thread 423 Conversion Begins.
2026-06-04T19:32:19Z thread 423 Input BCL Information:
2026-06-04T19:32:19Z thread 423     Read Structure: 2026-06-04T19:32:19Z thread 423 Y1512026-06-04T19:32:19Z thread 423 ;2026-06-04T19:32:19Z thread 423 I102026-06-04T19:32:19Z thread 423 ;2026-06-04T19:32:19Z thread 423 I102026-06-04T19:32:19Z thread 423 ;2026-06-04T19:32:19Z thread 423 Y1512026-06-04T19:32:19Z thread 423 
2026-06-04T19:32:19Z thread 423     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-04T19:32:19Z thread 423     BCL file format: cbcl
2026-06-04T19:32:19Z thread 423     Positions file format: slocs
2026-06-04T19:32:19Z thread 423     Filter file format: filter
2026-06-04T19:32:19Z thread 423 Conversion Information:
2026-06-04T19:32:19Z thread 423     Tile filtering: converting 784/6272 tiles
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 1: 48
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 2: 48
2026-06-04T19:32:19Z thread 423     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 3: 48
2026-06-04T19:32:19Z thread 423     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 4: 48
2026-06-04T19:32:19Z thread 423     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 5: 48
2026-06-04T19:32:19Z thread 423     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 6: 48
2026-06-04T19:32:19Z thread 423     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 7: 48
2026-06-04T19:32:19Z thread 423     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Sample Count for Lane 8: 48
2026-06-04T19:32:19Z thread 423     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-04T19:32:19Z thread 423     Expected number of sample FASTQ files to be created: 96
2026-06-04T19:32:19Z thread 423 # CPU hw threads available: 64
2026-06-04T19:32:20Z thread 423 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-04T19:32:20Z thread 423 SW compressors: 64
2026-06-04T19:32:20Z thread 423 SW decompressors: 32
2026-06-04T19:32:20Z thread 423 SW FASTQ compression level: 1
2026-06-04T19:53:30Z thread 423 Lane 1 Post-run Information:
2026-06-04T19:53:30Z thread 423     Total clusters: 3943473605
2026-06-04T19:53:30Z thread 423     Total Genomic Reads: 7886947210
2026-06-04T19:53:30Z thread 423     Total Genomic Input Gigabases 1190.93
2026-06-04T19:53:30Z thread 423     Minimum reads for a sample: 91158
2026-06-04T19:53:30Z thread 423     Maximum reads for a sample: 392018288
2026-06-04T19:53:30Z thread 423     Average reads per sample: 153131866.83
2026-06-04T19:53:30Z thread 423     Undetermined reads: 536617602
2026-06-04T19:53:31Z thread 423 Conversion Complete.