Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/ff83ea30d2a8cc1a235dc7c8126eb3/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/78059fced32892d49bd1e151dc8bc0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/78059fced32892d49bd1e151dc8bc0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/b8f8c87dd09599a9c5c0311e2153b1/659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 359156665
[W::hts_idx_load3] The index file is older than the data file: 659_b7Z-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	359156665
Known Splicing Events:	354294738
Partial Novel Splicing Events:	1786999
Novel Splicing Events:	2946718
Filtered Splicing Events:	128210

Total splicing  Junctions:	686661
Known Splicing Junctions:	289278
Partial Novel Splicing Junctions:	201725
Novel Splicing Junctions:	195658

===================================================================
Create BED file ...
Create Interact file ...