Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/14a18dfa077d704feb8db9460a8aa7/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/fcea8cc191e3f7315bd0b6d09725c1/659_bIB-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/14a18dfa077d704feb8db9460a8aa7/.command.run ==> STAGING COMPLETE (3 inputs) ls: *.bai: No such file or directory ls: *.csi: No such file or directory