File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/299d811868e98165168e6c02495e3e/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (20260226_LH00995_0015_B23MHV2LT4)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/0e80429be07daabb8adfdf51071aea/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3d75ffadd2a9af7c6a917c05eb76b3/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/7fc635ffdde66045829313ebe74279/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260226_LH00995_0015_B23MHV2LT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3d75ffadd2a9af7c6a917c05eb76b3/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/564b9063183c46a8ee6b41e9692b1a/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/299d811868e98165168e6c02495e3e/.command.sh
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260226_LH00995_0015_B23MHV2LT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/0e80429be07daabb8adfdf51071aea/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/3d75ffadd2a9af7c6a917c05eb76b3/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b24145f398cc1867a41b0559fec0c4/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/003f4cf1ec93031b9d5462d5ddc1d2/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/7fc635ffdde66045829313ebe74279/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260226_LH00995_0015_B23MHV2LT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b24145f398cc1867a41b0559fec0c4/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/8cd48e1d69a10ae55cb898febb265b/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/8cd48e1d69a10ae55cb898febb265b/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/7fc635ffdde66045829313ebe74279/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/8cd48e1d69a10ae55cb898febb265b/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/564b9063183c46a8ee6b41e9692b1a/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/0e80429be07daabb8adfdf51071aea/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/798373c0c5b9149812933bc9e0d876/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/798373c0c5b9149812933bc9e0d876/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/003f4cf1ec93031b9d5462d5ddc1d2/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/003f4cf1ec93031b9d5462d5ddc1d2/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/b24145f398cc1867a41b0559fec0c4/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/798373c0c5b9149812933bc9e0d876/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/299d811868e98165168e6c02495e3e/.command.run
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260226_LH00995_0015_B23MHV2LT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/564b9063183c46a8ee6b41e9692b1a/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated