Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/8529075544b82001c68ecd5d589c73/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/8529075544b82001c68ecd5d589c73/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/6e0d341d42a94f49161252cef23de5/659_6i-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/d7dc18735f2e3f21179ef8f3c52ccd/659_6i-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 189064900
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	189064900
Known Splicing Events:	187143760
Partial Novel Splicing Events:	952213
Novel Splicing Events:	890670
Filtered Splicing Events:	78257

Total splicing  Junctions:	394143
Known Splicing Junctions:	242056
Partial Novel Splicing Junctions:	88669
Novel Splicing Junctions:	63418

===================================================================
Create BED file ...
Create Interact file ...