File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/5cf9ce0f64045b17bd346c1e1cbbbe/.command.log
Size
5.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bhK-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/0cd6ac06f8927d64e153c8dc722c85/659_bhK-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/5cf9ce0f64045b17bd346c1e1cbbbe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/5cf9ce0f64045b17bd346c1e1cbbbe/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/e9bd5c46aff61d1820603767bf363f/659_bhK-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CCDC6--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
PRSS27--TPSB2
starfusion
NEBL--CDK1
starfusion
ECHS1--NEBL
starfusion
arriba
DNAJC1--C10orf143
starfusion
arriba
PMS2P5--CCDC146
starfusion
STX16--NPEPL1
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGA9
arriba
PCDHGA4--PCDHGA12
arriba
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba
TLK2--FAM157A
arriba
TRIM59--IFT80
arriba

  0%|          | 0/23 [00:00<?, ?it/s]
Processing CCDC6--RET:   0%|          | 0/23 [00:00<?, ?it/s]
Processing CCDC6--RET:   4%|▍         | 1/23 [00:00<00:02,  9.24it/s]
Processing TLK2--AC240565.1:   4%|▍         | 1/23 [00:00<00:02,  9.24it/s]
Processing TLK2--AC240565.1:   9%|▊         | 2/23 [00:00<00:02,  9.47it/s]
Processing PRSS27--TPSB2:   9%|▊         | 2/23 [00:00<00:02,  9.47it/s]   
Processing PRSS27--TPSB2:  13%|█▎        | 3/23 [00:00<00:02,  9.55it/s]
Processing NEBL--CDK1:  13%|█▎        | 3/23 [00:00<00:02,  9.55it/s]   
Processing NEBL--CDK1:  17%|█▋        | 4/23 [00:00<00:01,  9.59it/s]
Processing ECHS1--NEBL:  17%|█▋        | 4/23 [00:00<00:01,  9.59it/s]
Processing ECHS1--NEBL:  22%|██▏       | 5/23 [00:00<00:01,  9.61it/s]
Processing DNAJC1--C10orf143:  22%|██▏       | 5/23 [00:00<00:01,  9.61it/s]
Processing DNAJC1--C10orf143:  26%|██▌       | 6/23 [00:00<00:01,  9.62it/s]
Processing PMS2P5--CCDC146:  26%|██▌       | 6/23 [00:00<00:01,  9.62it/s]  
Processing PMS2P5--CCDC146:  30%|███       | 7/23 [00:00<00:01,  9.63it/s]
Processing STX16--NPEPL1:  30%|███       | 7/23 [00:00<00:01,  9.63it/s]  
Processing STX16--NPEPL1:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA8:  35%|███▍      | 8/23 [00:00<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA8:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA10:  39%|███▉      | 9/23 [00:00<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGA10:  43%|████▎     | 10/23 [00:01<00:01,  9.64it/s]
Processing PCDHGA4--PCDHGC4:  43%|████▎     | 10/23 [00:01<00:01,  9.64it/s] 
Processing PCDHGA4--PCDHGC4:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGB6:  48%|████▊     | 11/23 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGB6:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGC5:  52%|█████▏    | 12/23 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGC5:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGA11:  57%|█████▋    | 13/23 [00:01<00:01,  9.65it/s]
Processing PCDHGA4--PCDHGA11:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGB7:  61%|██████    | 14/23 [00:01<00:00,  9.65it/s] 
Processing PCDHGA4--PCDHGB7:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGC3:  65%|██████▌   | 15/23 [00:01<00:00,  9.65it/s]
Processing PCDHGA4--PCDHGC3:  70%|██████▉   | 16/23 [00:01<00:00,  9.64it/s]
Processing PCDHGA4--PCDHGA9:  70%|██████▉   | 16/23 [00:01<00:00,  9.64it/s]
Processing PCDHGA4--PCDHGA9:  74%|███████▍  | 17/23 [00:01<00:00,  9.64it/s]
Processing PCDHGA4--PCDHGA12:  74%|███████▍  | 17/23 [00:01<00:00,  9.64it/s]
Processing PCDHGA4--PCDHGA12:  78%|███████▊  | 18/23 [00:01<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  78%|███████▊  | 18/23 [00:01<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  83%|████████▎ | 19/23 [00:01<00:00,  9.65it/s]    
Processing TVP23C--CDRT4:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s]
Processing KLRC4--KLRK1:  87%|████████▋ | 20/23 [00:02<00:00,  9.65it/s] 
Processing KLRC4--KLRK1:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing TLK2--FAM157A:  91%|█████████▏| 21/23 [00:02<00:00,  9.65it/s]
Processing TLK2--FAM157A:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing TRIM59--IFT80:  96%|█████████▌| 22/23 [00:02<00:00,  9.65it/s]
Processing TRIM59--IFT80: 100%|██████████| 23/23 [00:02<00:00,  9.65it/s]
Processing TRIM59--IFT80: 100%|██████████| 23/23 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory