Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/40017f562c364c231d4b4714b754bd/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/40017f562c364c231d4b4714b754bd/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae1964fa9d2678385b142b0da0b910/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 21:04:45.359 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Thu Jun 04 21:04:45 GMT 2026] MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu Jun 04 21:04:45 GMT 2026] Executing as ?@nf-3a40017f562c364c231d4b4714b754bd-3d792-fnzcv on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-04 21:04:45 MarkDuplicates Start of doWork freeMemory: 105829536; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-04 21:04:45 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-04 21:04:45 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-04 21:04:48 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,439,343 INFO 2026-06-04 21:04:48 MarkDuplicates Tracking 2890 as yet unmatched pairs. 64 records in RAM. INFO 2026-06-04 21:04:50 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:3,506,108 INFO 2026-06-04 21:04:50 MarkDuplicates Tracking 5754 as yet unmatched pairs. 223 records in RAM. INFO 2026-06-04 21:04:51 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:8,358,431 INFO 2026-06-04 21:04:51 MarkDuplicates Tracking 8254 as yet unmatched pairs. 157 records in RAM. INFO 2026-06-04 21:04:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:10,653,487 INFO 2026-06-04 21:04:53 MarkDuplicates Tracking 10709 as yet unmatched pairs. 80 records in RAM. INFO 2026-06-04 21:04:55 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:13,780,790 INFO 2026-06-04 21:04:55 MarkDuplicates Tracking 13606 as yet unmatched pairs. 379 records in RAM. INFO 2026-06-04 21:04:56 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:16,758,035 INFO 2026-06-04 21:04:56 MarkDuplicates Tracking 15625 as yet unmatched pairs. 121 records in RAM. INFO 2026-06-04 21:04:58 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:19,657,416 INFO 2026-06-04 21:04:58 MarkDuplicates Tracking 18110 as yet unmatched pairs. 5 records in RAM. INFO 2026-06-04 21:05:01 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:21,833,835 INFO 2026-06-04 21:05:01 MarkDuplicates Tracking 21205 as yet unmatched pairs. 397 records in RAM. INFO 2026-06-04 21:05:02 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:22,086,793 INFO 2026-06-04 21:05:02 MarkDuplicates Tracking 24103 as yet unmatched pairs. 528 records in RAM. INFO 2026-06-04 21:05:03 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:23,692,690 INFO 2026-06-04 21:05:03 MarkDuplicates Tracking 27055 as yet unmatched pairs. 946 records in RAM. INFO 2026-06-04 21:05:05 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:26,296,919 INFO 2026-06-04 21:05:05 MarkDuplicates Tracking 28619 as yet unmatched pairs. 104 records in RAM. INFO 2026-06-04 21:05:06 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:27,410,096 INFO 2026-06-04 21:05:06 MarkDuplicates Tracking 31639 as yet unmatched pairs. 642 records in RAM. INFO 2026-06-04 21:05:08 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:30,741,685 INFO 2026-06-04 21:05:08 MarkDuplicates Tracking 34378 as yet unmatched pairs. 799 records in RAM. INFO 2026-06-04 21:05:09 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:32,695,476 INFO 2026-06-04 21:05:09 MarkDuplicates Tracking 36124 as yet unmatched pairs. 65 records in RAM. INFO 2026-06-04 21:05:11 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:35,888,575 INFO 2026-06-04 21:05:11 MarkDuplicates Tracking 38648 as yet unmatched pairs. 122 records in RAM. INFO 2026-06-04 21:05:13 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:39,295,810 INFO 2026-06-04 21:05:13 MarkDuplicates Tracking 42955 as yet unmatched pairs. 2018 records in RAM. INFO 2026-06-04 21:05:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,422,407 INFO 2026-06-04 21:05:14 MarkDuplicates Tracking 43622 as yet unmatched pairs. 458 records in RAM. INFO 2026-06-04 21:05:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:40,067,639 INFO 2026-06-04 21:05:16 MarkDuplicates Tracking 45849 as yet unmatched pairs. 234 records in RAM. INFO 2026-06-04 21:05:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:43,443,026 INFO 2026-06-04 21:05:17 MarkDuplicates Tracking 48244 as yet unmatched pairs. 149 records in RAM. INFO 2026-06-04 21:05:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:45,660,291 INFO 2026-06-04 21:05:19 MarkDuplicates Tracking 50641 as yet unmatched pairs. 24 records in RAM. INFO 2026-06-04 21:05:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:47,372,954 INFO 2026-06-04 21:05:22 MarkDuplicates Tracking 53509 as yet unmatched pairs. 395 records in RAM. INFO 2026-06-04 21:05:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 3s. Last read position: chr1:53,828,143 INFO 2026-06-04 21:05:25 MarkDuplicates Tracking 55697 as yet unmatched pairs. 67 records in RAM. INFO 2026-06-04 21:05:26 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:61,775,229 INFO 2026-06-04 21:05:26 MarkDuplicates Tracking 58458 as yet unmatched pairs. 311 records in RAM. INFO 2026-06-04 21:05:28 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:74,710,145 INFO 2026-06-04 21:05:28 MarkDuplicates Tracking 60756 as yet unmatched pairs. 255 records in RAM. INFO 2026-06-04 21:05:30 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:87,340,050 INFO 2026-06-04 21:05:30 MarkDuplicates Tracking 62908 as yet unmatched pairs. 99 records in RAM. INFO 2026-06-04 21:05:31 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:94,899,390 INFO 2026-06-04 21:05:31 MarkDuplicates Tracking 65452 as yet unmatched pairs. 295 records in RAM. INFO 2026-06-04 21:05:33 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:109,251,823 INFO 2026-06-04 21:05:33 MarkDuplicates Tracking 67286 as yet unmatched pairs. 63 records in RAM. INFO 2026-06-04 21:05:36 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:112,694,476 INFO 2026-06-04 21:05:36 MarkDuplicates Tracking 69854 as yet unmatched pairs. 101 records in RAM. INFO 2026-06-04 21:05:37 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:114,570,724 INFO 2026-06-04 21:05:37 MarkDuplicates Tracking 72227 as yet unmatched pairs. 224 records in RAM. INFO 2026-06-04 21:05:39 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:116,404,459 INFO 2026-06-04 21:05:39 MarkDuplicates Tracking 74609 as yet unmatched pairs. 201 records in RAM. INFO 2026-06-04 21:05:41 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:119,955,132 INFO 2026-06-04 21:05:41 MarkDuplicates Tracking 78480 as yet unmatched pairs. 1592 records in RAM. INFO 2026-06-04 21:05:42 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:145,395,117 INFO 2026-06-04 21:05:42 MarkDuplicates Tracking 78467 as yet unmatched pairs. 75 records in RAM. INFO 2026-06-04 21:05:44 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:146,088,481 INFO 2026-06-04 21:05:44 MarkDuplicates Tracking 80551 as yet unmatched pairs. 33 records in RAM. INFO 2026-06-04 21:05:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:147,215,866 INFO 2026-06-04 21:05:45 MarkDuplicates Tracking 86275 as yet unmatched pairs. 4210 records in RAM. INFO 2026-06-04 21:05:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:149,071,622 INFO 2026-06-04 21:05:47 MarkDuplicates Tracking 83565 as yet unmatched pairs. 80 records in RAM. INFO 2026-06-04 21:05:49 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:150,497,542 INFO 2026-06-04 21:05:49 MarkDuplicates Tracking 85369 as yet unmatched pairs. 184 records in RAM. INFO 2026-06-04 21:05:51 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:151,132,410 INFO 2026-06-04 21:05:51 MarkDuplicates Tracking 87753 as yet unmatched pairs. 46 records in RAM. INFO 2026-06-04 21:05:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:151,983,282 INFO 2026-06-04 21:05:52 MarkDuplicates Tracking 91186 as yet unmatched pairs. 912 records in RAM. INFO 2026-06-04 21:05:54 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:153,810,252 INFO 2026-06-04 21:05:54 MarkDuplicates Tracking 92978 as yet unmatched pairs. 318 records in RAM. INFO 2026-06-04 21:05:56 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,237,056 INFO 2026-06-04 21:05:56 MarkDuplicates Tracking 94947 as yet unmatched pairs. 122 records in RAM. INFO 2026-06-04 21:05:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,054,394 INFO 2026-06-04 21:05:57 MarkDuplicates Tracking 97287 as yet unmatched pairs. 147 records in RAM. INFO 2026-06-04 21:05:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,382 INFO 2026-06-04 21:05:59 MarkDuplicates Tracking 100757 as yet unmatched pairs. 1283 records in RAM. INFO 2026-06-04 21:06:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,768 INFO 2026-06-04 21:06:00 MarkDuplicates Tracking 101222 as yet unmatched pairs. 608 records in RAM. INFO 2026-06-04 21:06:01 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:155,216,993 INFO 2026-06-04 21:06:01 MarkDuplicates Tracking 102556 as yet unmatched pairs. 39 records in RAM. INFO 2026-06-04 21:06:03 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,962,213 INFO 2026-06-04 21:06:03 MarkDuplicates Tracking 104859 as yet unmatched pairs. 160 records in RAM. INFO 2026-06-04 21:06:06 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,468,859 INFO 2026-06-04 21:06:06 MarkDuplicates Tracking 107823 as yet unmatched pairs. 136 records in RAM. INFO 2026-06-04 21:06:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 3s. Last read position: chr1:160,239,717 INFO 2026-06-04 21:06:09 MarkDuplicates Tracking 110518 as yet unmatched pairs. 416 records in RAM. INFO 2026-06-04 21:06:11 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,676 INFO 2026-06-04 21:06:11 MarkDuplicates Tracking 112835 as yet unmatched pairs. 393 records in RAM. INFO 2026-06-04 21:06:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:169,111,370 INFO 2026-06-04 21:06:12 MarkDuplicates Tracking 116906 as yet unmatched pairs. 2259 records in RAM. INFO 2026-06-04 21:06:14 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:171,584,424 INFO 2026-06-04 21:06:14 MarkDuplicates Tracking 116972 as yet unmatched pairs. 118 records in RAM. INFO 2026-06-04 21:06:15 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:180,154,895 INFO 2026-06-04 21:06:15 MarkDuplicates Tracking 119332 as yet unmatched pairs. 219 records in RAM. INFO 2026-06-04 21:06:17 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:183,136,402 INFO 2026-06-04 21:06:17 MarkDuplicates Tracking 121765 as yet unmatched pairs. 93 records in RAM. INFO 2026-06-04 21:06:18 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:186,306,967 INFO 2026-06-04 21:06:18 MarkDuplicates Tracking 124034 as yet unmatched pairs. 153 records in RAM. INFO 2026-06-04 21:06:20 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:192,575,832 INFO 2026-06-04 21:06:20 MarkDuplicates Tracking 126207 as yet unmatched pairs. 284 records in RAM. INFO 2026-06-04 21:06:21 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:201,790,708 INFO 2026-06-04 21:06:21 MarkDuplicates Tracking 128329 as yet unmatched pairs. 73 records in RAM. INFO 2026-06-04 21:06:22 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:203,486,842 INFO 2026-06-04 21:06:22 MarkDuplicates Tracking 130905 as yet unmatched pairs. 363 records in RAM. INFO 2026-06-04 21:06:24 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:205,799,808 INFO 2026-06-04 21:06:24 MarkDuplicates Tracking 133005 as yet unmatched pairs. 128 records in RAM. INFO 2026-06-04 21:06:25 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:207,022,652 INFO 2026-06-04 21:06:25 MarkDuplicates Tracking 135573 as yet unmatched pairs. 289 records in RAM. INFO 2026-06-04 21:06:27 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:207,354,023 INFO 2026-06-04 21:06:27 MarkDuplicates Tracking 138582 as yet unmatched pairs. 921 records in RAM. INFO 2026-06-04 21:06:28 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:212,791,948 INFO 2026-06-04 21:06:28 MarkDuplicates Tracking 140073 as yet unmatched pairs. 82 records in RAM. INFO 2026-06-04 21:06:30 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:223,717,766 INFO 2026-06-04 21:06:30 MarkDuplicates Tracking 143106 as yet unmatched pairs. 738 records in RAM. INFO 2026-06-04 21:06:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:225,845,276 INFO 2026-06-04 21:06:31 MarkDuplicates Tracking 145399 as yet unmatched pairs. 559 records in RAM. INFO 2026-06-04 21:06:33 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:228,317,980 INFO 2026-06-04 21:06:33 MarkDuplicates Tracking 147379 as yet unmatched pairs. 32 records in RAM. INFO 2026-06-04 21:06:34 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:235,119,890 INFO 2026-06-04 21:06:34 MarkDuplicates Tracking 150411 as yet unmatched pairs. 203 records in RAM. INFO 2026-06-04 21:06:36 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:244,054,114 INFO 2026-06-04 21:06:36 MarkDuplicates Tracking 152676 as yet unmatched pairs. 140 records in RAM. INFO 2026-06-04 21:06:40 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 4s. Last read position: chr2:3,575,620 INFO 2026-06-04 21:06:40 MarkDuplicates Tracking 155699 as yet unmatched pairs. 154922 records in RAM. INFO 2026-06-04 21:06:42 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:17,931,184 INFO 2026-06-04 21:06:42 MarkDuplicates Tracking 157506 as yet unmatched pairs. 156713 records in RAM. INFO 2026-06-04 21:06:44 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:24,658,738 INFO 2026-06-04 21:06:44 MarkDuplicates Tracking 160495 as yet unmatched pairs. 159684 records in RAM. INFO 2026-06-04 21:06:46 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:27,225,832 INFO 2026-06-04 21:06:46 MarkDuplicates Tracking 162637 as yet unmatched pairs. 161820 records in RAM. INFO 2026-06-04 21:06:48 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:30,234,404 INFO 2026-06-04 21:06:48 MarkDuplicates Tracking 165851 as yet unmatched pairs. 165018 records in RAM. INFO 2026-06-04 21:06:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-04 21:06:50 MarkDuplicates Tracking 258053 as yet unmatched pairs. 160630 records in RAM. INFO 2026-06-04 21:06:52 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-04 21:06:52 MarkDuplicates Tracking 938079 as yet unmatched pairs. 126213 records in RAM. INFO 2026-06-04 21:06:53 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:06:53 MarkDuplicates Tracking 1280105 as yet unmatched pairs. 108419 records in RAM. INFO 2026-06-04 21:06:54 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406 INFO 2026-06-04 21:06:54 MarkDuplicates Tracking 1286094 as yet unmatched pairs. 108184 records in RAM. INFO 2026-06-04 21:06:56 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:36,988,802 INFO 2026-06-04 21:06:56 MarkDuplicates Tracking 1344069 as yet unmatched pairs. 103720 records in RAM. INFO 2026-06-04 21:06:57 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,701 INFO 2026-06-04 21:06:57 MarkDuplicates Tracking 1342142 as yet unmatched pairs. 101780 records in RAM. INFO 2026-06-04 21:06:59 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:46,361,072 INFO 2026-06-04 21:06:59 MarkDuplicates Tracking 1340654 as yet unmatched pairs. 100280 records in RAM. INFO 2026-06-04 21:07:00 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:47,834,816 INFO 2026-06-04 21:07:00 MarkDuplicates Tracking 1336731 as yet unmatched pairs. 96356 records in RAM. INFO 2026-06-04 21:07:02 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,002 INFO 2026-06-04 21:07:02 MarkDuplicates Tracking 1335460 as yet unmatched pairs. 95067 records in RAM. INFO 2026-06-04 21:07:03 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:59,188,199 INFO 2026-06-04 21:07:03 MarkDuplicates Tracking 1331684 as yet unmatched pairs. 91268 records in RAM. INFO 2026-06-04 21:07:05 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:68,162,605 INFO 2026-06-04 21:07:05 MarkDuplicates Tracking 1329434 as yet unmatched pairs. 89004 records in RAM. INFO 2026-06-04 21:07:06 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:73,075,527 INFO 2026-06-04 21:07:06 MarkDuplicates Tracking 1327273 as yet unmatched pairs. 86832 records in RAM. INFO 2026-06-04 21:07:08 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:76,445,293 INFO 2026-06-04 21:07:08 MarkDuplicates Tracking 1324628 as yet unmatched pairs. 84183 records in RAM. INFO 2026-06-04 21:07:09 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:85,661,463 INFO 2026-06-04 21:07:09 MarkDuplicates Tracking 1330013 as yet unmatched pairs. 89552 records in RAM. INFO 2026-06-04 21:07:11 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,709 INFO 2026-06-04 21:07:11 MarkDuplicates Tracking 1329200 as yet unmatched pairs. 88733 records in RAM. INFO 2026-06-04 21:07:12 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:85,665,682 INFO 2026-06-04 21:07:12 MarkDuplicates Tracking 1325111 as yet unmatched pairs. 84636 records in RAM. INFO 2026-06-04 21:07:13 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:85,848,077 INFO 2026-06-04 21:07:13 MarkDuplicates Tracking 1314106 as yet unmatched pairs. 73623 records in RAM. INFO 2026-06-04 21:07:15 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:96,023,063 INFO 2026-06-04 21:07:15 MarkDuplicates Tracking 1311925 as yet unmatched pairs. 71433 records in RAM. INFO 2026-06-04 21:07:17 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:99,593,839 INFO 2026-06-04 21:07:17 MarkDuplicates Tracking 1309596 as yet unmatched pairs. 69091 records in RAM. INFO 2026-06-04 21:07:18 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:108,487,720 INFO 2026-06-04 21:07:18 MarkDuplicates Tracking 1307594 as yet unmatched pairs. 67071 records in RAM. INFO 2026-06-04 21:07:20 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,466 INFO 2026-06-04 21:07:20 MarkDuplicates Tracking 1306158 as yet unmatched pairs. 65624 records in RAM. INFO 2026-06-04 21:07:22 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:112,401,726 INFO 2026-06-04 21:07:22 MarkDuplicates Tracking 1304734 as yet unmatched pairs. 64192 records in RAM. INFO 2026-06-04 21:07:23 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:121,249,040 INFO 2026-06-04 21:07:23 MarkDuplicates Tracking 1302593 as yet unmatched pairs. 62032 records in RAM. INFO 2026-06-04 21:07:25 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:134,718,798 INFO 2026-06-04 21:07:25 MarkDuplicates Tracking 1299789 as yet unmatched pairs. 59212 records in RAM. INFO 2026-06-04 21:07:27 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:151,604,773 INFO 2026-06-04 21:07:27 MarkDuplicates Tracking 1297552 as yet unmatched pairs. 56972 records in RAM. INFO 2026-06-04 21:07:29 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:161,235,354 INFO 2026-06-04 21:07:29 MarkDuplicates Tracking 1295541 as yet unmatched pairs. 54954 records in RAM. INFO 2026-06-04 21:07:31 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:171,517,621 INFO 2026-06-04 21:07:31 MarkDuplicates Tracking 1293008 as yet unmatched pairs. 52406 records in RAM. INFO 2026-06-04 21:07:32 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:178,465,781 INFO 2026-06-04 21:07:32 MarkDuplicates Tracking 1290771 as yet unmatched pairs. 50163 records in RAM. INFO 2026-06-04 21:07:34 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:182,117,260 INFO 2026-06-04 21:07:34 MarkDuplicates Tracking 1288511 as yet unmatched pairs. 47899 records in RAM. INFO 2026-06-04 21:07:35 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:189,057,388 INFO 2026-06-04 21:07:35 MarkDuplicates Tracking 1286084 as yet unmatched pairs. 45467 records in RAM. INFO 2026-06-04 21:07:37 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:197,089,965 INFO 2026-06-04 21:07:37 MarkDuplicates Tracking 1283733 as yet unmatched pairs. 43101 records in RAM. INFO 2026-06-04 21:07:38 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:202,207,195 INFO 2026-06-04 21:07:38 MarkDuplicates Tracking 1281493 as yet unmatched pairs. 40849 records in RAM. INFO 2026-06-04 21:07:40 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:206,281,889 INFO 2026-06-04 21:07:40 MarkDuplicates Tracking 1279014 as yet unmatched pairs. 38359 records in RAM. INFO 2026-06-04 21:07:41 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,046 INFO 2026-06-04 21:07:41 MarkDuplicates Tracking 1282960 as yet unmatched pairs. 42285 records in RAM. INFO 2026-06-04 21:07:43 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,162 INFO 2026-06-04 21:07:43 MarkDuplicates Tracking 1286010 as yet unmatched pairs. 45332 records in RAM. INFO 2026-06-04 21:07:45 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,538 INFO 2026-06-04 21:07:45 MarkDuplicates Tracking 1279046 as yet unmatched pairs. 38367 records in RAM. INFO 2026-06-04 21:07:46 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,336 INFO 2026-06-04 21:07:46 MarkDuplicates Tracking 1272595 as yet unmatched pairs. 31915 records in RAM. INFO 2026-06-04 21:07:47 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,742 INFO 2026-06-04 21:07:47 MarkDuplicates Tracking 1277196 as yet unmatched pairs. 36509 records in RAM. INFO 2026-06-04 21:07:49 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,642 INFO 2026-06-04 21:07:49 MarkDuplicates Tracking 1270051 as yet unmatched pairs. 29362 records in RAM. INFO 2026-06-04 21:07:51 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,000 INFO 2026-06-04 21:07:51 MarkDuplicates Tracking 1267182 as yet unmatched pairs. 26484 records in RAM. INFO 2026-06-04 21:07:53 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,119 INFO 2026-06-04 21:07:53 MarkDuplicates Tracking 1264276 as yet unmatched pairs. 23571 records in RAM. INFO 2026-06-04 21:07:54 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:216,162,014 INFO 2026-06-04 21:07:54 MarkDuplicates Tracking 1258957 as yet unmatched pairs. 18248 records in RAM. INFO 2026-06-04 21:07:55 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:217,848,008 INFO 2026-06-04 21:07:55 MarkDuplicates Tracking 1256549 as yet unmatched pairs. 15834 records in RAM. INFO 2026-06-04 21:07:57 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:218,814,587 INFO 2026-06-04 21:07:57 MarkDuplicates Tracking 1253585 as yet unmatched pairs. 12861 records in RAM. INFO 2026-06-04 21:07:59 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:226,908,849 INFO 2026-06-04 21:07:59 MarkDuplicates Tracking 1251040 as yet unmatched pairs. 10276 records in RAM. INFO 2026-06-04 21:08:00 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:231,708,663 INFO 2026-06-04 21:08:00 MarkDuplicates Tracking 1249623 as yet unmatched pairs. 8852 records in RAM. INFO 2026-06-04 21:08:02 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:237,357,341 INFO 2026-06-04 21:08:02 MarkDuplicates Tracking 1246456 as yet unmatched pairs. 5682 records in RAM. INFO 2026-06-04 21:08:04 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:238,253,296 INFO 2026-06-04 21:08:04 MarkDuplicates Tracking 1243838 as yet unmatched pairs. 3052 records in RAM. INFO 2026-06-04 21:08:05 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:241,499,307 INFO 2026-06-04 21:08:05 MarkDuplicates Tracking 1241244 as yet unmatched pairs. 440 records in RAM. INFO 2026-06-04 21:08:08 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr3:9,930,450 INFO 2026-06-04 21:08:08 MarkDuplicates Tracking 1238780 as yet unmatched pairs. 68586 records in RAM. INFO 2026-06-04 21:08:10 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:14,158,796 INFO 2026-06-04 21:08:10 MarkDuplicates Tracking 1236124 as yet unmatched pairs. 65914 records in RAM. INFO 2026-06-04 21:08:11 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:25,636,044 INFO 2026-06-04 21:08:11 MarkDuplicates Tracking 1234037 as yet unmatched pairs. 63806 records in RAM. INFO 2026-06-04 21:08:13 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:36,992,592 INFO 2026-06-04 21:08:13 MarkDuplicates Tracking 1231311 as yet unmatched pairs. 61069 records in RAM. INFO 2026-06-04 21:08:15 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:40,252,513 INFO 2026-06-04 21:08:15 MarkDuplicates Tracking 1228790 as yet unmatched pairs. 58538 records in RAM. INFO 2026-06-04 21:08:16 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:44,396,744 INFO 2026-06-04 21:08:16 MarkDuplicates Tracking 1226474 as yet unmatched pairs. 56210 records in RAM. INFO 2026-06-04 21:08:18 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:47,411,332 INFO 2026-06-04 21:08:18 MarkDuplicates Tracking 1224001 as yet unmatched pairs. 53728 records in RAM. INFO 2026-06-04 21:08:19 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:48,695,112 INFO 2026-06-04 21:08:19 MarkDuplicates Tracking 1221989 as yet unmatched pairs. 51703 records in RAM. INFO 2026-06-04 21:08:21 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,360,133 INFO 2026-06-04 21:08:21 MarkDuplicates Tracking 1220494 as yet unmatched pairs. 50189 records in RAM. INFO 2026-06-04 21:08:22 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:50,302,509 INFO 2026-06-04 21:08:22 MarkDuplicates Tracking 1216526 as yet unmatched pairs. 46216 records in RAM. INFO 2026-06-04 21:08:24 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:51,994,913 INFO 2026-06-04 21:08:24 MarkDuplicates Tracking 1213908 as yet unmatched pairs. 43580 records in RAM. INFO 2026-06-04 21:08:25 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:53,228,073 INFO 2026-06-04 21:08:25 MarkDuplicates Tracking 1211907 as yet unmatched pairs. 41569 records in RAM. INFO 2026-06-04 21:08:27 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:61,742,734 INFO 2026-06-04 21:08:27 MarkDuplicates Tracking 1209475 as yet unmatched pairs. 39120 records in RAM. INFO 2026-06-04 21:08:28 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:71,112,448 INFO 2026-06-04 21:08:28 MarkDuplicates Tracking 1206915 as yet unmatched pairs. 36534 records in RAM. INFO 2026-06-04 21:08:30 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:99,848,781 INFO 2026-06-04 21:08:30 MarkDuplicates Tracking 1205184 as yet unmatched pairs. 34769 records in RAM. INFO 2026-06-04 21:08:31 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:105,367,450 INFO 2026-06-04 21:08:31 MarkDuplicates Tracking 1203215 as yet unmatched pairs. 32788 records in RAM. INFO 2026-06-04 21:08:33 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:114,380,253 INFO 2026-06-04 21:08:33 MarkDuplicates Tracking 1200638 as yet unmatched pairs. 30192 records in RAM. INFO 2026-06-04 21:08:35 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:122,701,407 INFO 2026-06-04 21:08:35 MarkDuplicates Tracking 1198049 as yet unmatched pairs. 27598 records in RAM. INFO 2026-06-04 21:08:36 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:125,520,028 INFO 2026-06-04 21:08:36 MarkDuplicates Tracking 1195546 as yet unmatched pairs. 25074 records in RAM. INFO 2026-06-04 21:08:38 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:129,256,067 INFO 2026-06-04 21:08:38 MarkDuplicates Tracking 1192855 as yet unmatched pairs. 22373 records in RAM. INFO 2026-06-04 21:08:40 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:132,675,361 INFO 2026-06-04 21:08:40 MarkDuplicates Tracking 1190281 as yet unmatched pairs. 19786 records in RAM. INFO 2026-06-04 21:08:41 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,112 INFO 2026-06-04 21:08:41 MarkDuplicates Tracking 1187816 as yet unmatched pairs. 17300 records in RAM. INFO 2026-06-04 21:08:44 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr3:150,410,734 INFO 2026-06-04 21:08:44 MarkDuplicates Tracking 1185476 as yet unmatched pairs. 14958 records in RAM. INFO 2026-06-04 21:08:46 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:160,399,701 INFO 2026-06-04 21:08:46 MarkDuplicates Tracking 1182997 as yet unmatched pairs. 12469 records in RAM. INFO 2026-06-04 21:08:48 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:172,426,727 INFO 2026-06-04 21:08:48 MarkDuplicates Tracking 1180723 as yet unmatched pairs. 10187 records in RAM. INFO 2026-06-04 21:08:49 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:184,144,216 INFO 2026-06-04 21:08:49 MarkDuplicates Tracking 1178476 as yet unmatched pairs. 7921 records in RAM. INFO 2026-06-04 21:08:51 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:186,081,069 INFO 2026-06-04 21:08:51 MarkDuplicates Tracking 1176894 as yet unmatched pairs. 6326 records in RAM. INFO 2026-06-04 21:08:52 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:189,957,929 INFO 2026-06-04 21:08:52 MarkDuplicates Tracking 1173989 as yet unmatched pairs. 3407 records in RAM. INFO 2026-06-04 21:08:54 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:195,882,142 INFO 2026-06-04 21:08:54 MarkDuplicates Tracking 1171867 as yet unmatched pairs. 1275 records in RAM. INFO 2026-06-04 21:08:56 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:1,170,407 INFO 2026-06-04 21:08:56 MarkDuplicates Tracking 1169298 as yet unmatched pairs. 51844 records in RAM. INFO 2026-06-04 21:08:57 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:2,932,747 INFO 2026-06-04 21:08:57 MarkDuplicates Tracking 1166740 as yet unmatched pairs. 49280 records in RAM. INFO 2026-06-04 21:08:59 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:8,295,639 INFO 2026-06-04 21:08:59 MarkDuplicates Tracking 1164039 as yet unmatched pairs. 46573 records in RAM. INFO 2026-06-04 21:09:00 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:24,799,783 INFO 2026-06-04 21:09:00 MarkDuplicates Tracking 1161958 as yet unmatched pairs. 44477 records in RAM. INFO 2026-06-04 21:09:01 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:25,664,257 INFO 2026-06-04 21:09:01 MarkDuplicates Tracking 1161016 as yet unmatched pairs. 43529 records in RAM. INFO 2026-06-04 21:09:03 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:25,673,130 INFO 2026-06-04 21:09:03 MarkDuplicates Tracking 1160301 as yet unmatched pairs. 42802 records in RAM. INFO 2026-06-04 21:09:05 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,333 INFO 2026-06-04 21:09:05 MarkDuplicates Tracking 1158471 as yet unmatched pairs. 40970 records in RAM. INFO 2026-06-04 21:09:06 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:39,467,573 INFO 2026-06-04 21:09:06 MarkDuplicates Tracking 1152644 as yet unmatched pairs. 35132 records in RAM. INFO 2026-06-04 21:09:07 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:47,546,814 INFO 2026-06-04 21:09:07 MarkDuplicates Tracking 1150166 as yet unmatched pairs. 32641 records in RAM. INFO 2026-06-04 21:09:09 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:54,733,070 INFO 2026-06-04 21:09:09 MarkDuplicates Tracking 1147822 as yet unmatched pairs. 30288 records in RAM. INFO 2026-06-04 21:09:11 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:70,662,163 INFO 2026-06-04 21:09:11 MarkDuplicates Tracking 1145435 as yet unmatched pairs. 27885 records in RAM. INFO 2026-06-04 21:09:12 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:76,739,267 INFO 2026-06-04 21:09:12 MarkDuplicates Tracking 1143090 as yet unmatched pairs. 25530 records in RAM. INFO 2026-06-04 21:09:14 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:82,827,568 INFO 2026-06-04 21:09:14 MarkDuplicates Tracking 1140755 as yet unmatched pairs. 23190 records in RAM. INFO 2026-06-04 21:09:15 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:86,796,895 INFO 2026-06-04 21:09:15 MarkDuplicates Tracking 1138560 as yet unmatched pairs. 20989 records in RAM. INFO 2026-06-04 21:09:17 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:88,739,037 INFO 2026-06-04 21:09:17 MarkDuplicates Tracking 1136122 as yet unmatched pairs. 18546 records in RAM. INFO 2026-06-04 21:09:18 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:102,267,958 INFO 2026-06-04 21:09:18 MarkDuplicates Tracking 1133715 as yet unmatched pairs. 16126 records in RAM. INFO 2026-06-04 21:09:21 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:112,268,310 INFO 2026-06-04 21:09:21 MarkDuplicates Tracking 1131372 as yet unmatched pairs. 13771 records in RAM. INFO 2026-06-04 21:09:23 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr4:122,209,265 INFO 2026-06-04 21:09:23 MarkDuplicates Tracking 1129408 as yet unmatched pairs. 11786 records in RAM. INFO 2026-06-04 21:09:25 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,489 INFO 2026-06-04 21:09:25 MarkDuplicates Tracking 1126940 as yet unmatched pairs. 9313 records in RAM. INFO 2026-06-04 21:09:27 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:151,099,694 INFO 2026-06-04 21:09:27 MarkDuplicates Tracking 1125972 as yet unmatched pairs. 8331 records in RAM. INFO 2026-06-04 21:09:28 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:159,238,807 INFO 2026-06-04 21:09:28 MarkDuplicates Tracking 1122533 as yet unmatched pairs. 4883 records in RAM. INFO 2026-06-04 21:09:29 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:183,261,088 INFO 2026-06-04 21:09:29 MarkDuplicates Tracking 1120035 as yet unmatched pairs. 2373 records in RAM. INFO 2026-06-04 21:09:32 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:254,391 INFO 2026-06-04 21:09:32 MarkDuplicates Tracking 1118081 as yet unmatched pairs. 95356 records in RAM. INFO 2026-06-04 21:09:33 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:10,254,724 INFO 2026-06-04 21:09:33 MarkDuplicates Tracking 1114862 as yet unmatched pairs. 92124 records in RAM. INFO 2026-06-04 21:09:35 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:14,378,070 INFO 2026-06-04 21:09:35 MarkDuplicates Tracking 1113780 as yet unmatched pairs. 91034 records in RAM. INFO 2026-06-04 21:09:37 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:16,763,655 INFO 2026-06-04 21:09:37 MarkDuplicates Tracking 1109938 as yet unmatched pairs. 87189 records in RAM. INFO 2026-06-04 21:09:39 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr5:36,985,994 INFO 2026-06-04 21:09:39 MarkDuplicates Tracking 1107339 as yet unmatched pairs. 84574 records in RAM. INFO 2026-06-04 21:09:41 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:40,945,240 INFO 2026-06-04 21:09:41 MarkDuplicates Tracking 1105303 as yet unmatched pairs. 82532 records in RAM. INFO 2026-06-04 21:09:42 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:53,073,142 INFO 2026-06-04 21:09:42 MarkDuplicates Tracking 1102880 as yet unmatched pairs. 80094 records in RAM. INFO 2026-06-04 21:09:44 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:64,214,069 INFO 2026-06-04 21:09:44 MarkDuplicates Tracking 1100713 as yet unmatched pairs. 77912 records in RAM. INFO 2026-06-04 21:09:45 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:69,640,239 INFO 2026-06-04 21:09:45 MarkDuplicates Tracking 1098323 as yet unmatched pairs. 75506 records in RAM. INFO 2026-06-04 21:09:47 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:73,503,107 INFO 2026-06-04 21:09:47 MarkDuplicates Tracking 1098046 as yet unmatched pairs. 75221 records in RAM. INFO 2026-06-04 21:09:48 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:80,787,573 INFO 2026-06-04 21:09:48 MarkDuplicates Tracking 1094319 as yet unmatched pairs. 71480 records in RAM. INFO 2026-06-04 21:09:50 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:90,811,125 INFO 2026-06-04 21:09:50 MarkDuplicates Tracking 1092009 as yet unmatched pairs. 69157 records in RAM. INFO 2026-06-04 21:09:51 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:96,915,746 INFO 2026-06-04 21:09:51 MarkDuplicates Tracking 1089694 as yet unmatched pairs. 66825 records in RAM. INFO 2026-06-04 21:09:53 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:115,253,224 INFO 2026-06-04 21:09:53 MarkDuplicates Tracking 1087600 as yet unmatched pairs. 64722 records in RAM. INFO 2026-06-04 21:09:54 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:130,990,204 INFO 2026-06-04 21:09:54 MarkDuplicates Tracking 1085107 as yet unmatched pairs. 62217 records in RAM. INFO 2026-06-04 21:09:56 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:134,714,974 INFO 2026-06-04 21:09:56 MarkDuplicates Tracking 1082948 as yet unmatched pairs. 60046 records in RAM. INFO 2026-06-04 21:09:58 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:138,511,476 INFO 2026-06-04 21:09:58 MarkDuplicates Tracking 1080445 as yet unmatched pairs. 57539 records in RAM. INFO 2026-06-04 21:10:00 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr5:140,528,529 INFO 2026-06-04 21:10:00 MarkDuplicates Tracking 1078091 as yet unmatched pairs. 55142 records in RAM. INFO 2026-06-04 21:10:01 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,319,472 INFO 2026-06-04 21:10:01 MarkDuplicates Tracking 1075579 as yet unmatched pairs. 52625 records in RAM. INFO 2026-06-04 21:10:03 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,674 INFO 2026-06-04 21:10:03 MarkDuplicates Tracking 1072901 as yet unmatched pairs. 49919 records in RAM. INFO 2026-06-04 21:10:04 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:147,881,513 INFO 2026-06-04 21:10:04 MarkDuplicates Tracking 1076598 as yet unmatched pairs. 53603 records in RAM. INFO 2026-06-04 21:10:06 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:149,980,316 INFO 2026-06-04 21:10:06 MarkDuplicates Tracking 1068082 as yet unmatched pairs. 45086 records in RAM. INFO 2026-06-04 21:10:08 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,088 INFO 2026-06-04 21:10:08 MarkDuplicates Tracking 1073847 as yet unmatched pairs. 50846 records in RAM. INFO 2026-06-04 21:10:10 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,204 INFO 2026-06-04 21:10:10 MarkDuplicates Tracking 1135638 as yet unmatched pairs. 112633 records in RAM. INFO 2026-06-04 21:10:12 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,610 INFO 2026-06-04 21:10:12 MarkDuplicates Tracking 1091092 as yet unmatched pairs. 68080 records in RAM. INFO 2026-06-04 21:10:14 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,085 INFO 2026-06-04 21:10:14 MarkDuplicates Tracking 1072986 as yet unmatched pairs. 49974 records in RAM. INFO 2026-06-04 21:10:15 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,153 INFO 2026-06-04 21:10:15 MarkDuplicates Tracking 1088599 as yet unmatched pairs. 65582 records in RAM. INFO 2026-06-04 21:10:17 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,910 INFO 2026-06-04 21:10:17 MarkDuplicates Tracking 1074921 as yet unmatched pairs. 51899 records in RAM. INFO 2026-06-04 21:10:18 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,644 INFO 2026-06-04 21:10:18 MarkDuplicates Tracking 1050230 as yet unmatched pairs. 27200 records in RAM. INFO 2026-06-04 21:10:20 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:150,650,060 INFO 2026-06-04 21:10:20 MarkDuplicates Tracking 1048452 as yet unmatched pairs. 25412 records in RAM. INFO 2026-06-04 21:10:21 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:154,053,383 INFO 2026-06-04 21:10:21 MarkDuplicates Tracking 1045082 as yet unmatched pairs. 22040 records in RAM. INFO 2026-06-04 21:10:23 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:163,516,556 INFO 2026-06-04 21:10:23 MarkDuplicates Tracking 1043055 as yet unmatched pairs. 20009 records in RAM. INFO 2026-06-04 21:10:24 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,789 INFO 2026-06-04 21:10:24 MarkDuplicates Tracking 1051039 as yet unmatched pairs. 27984 records in RAM. INFO 2026-06-04 21:10:26 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:172,770,843 INFO 2026-06-04 21:10:26 MarkDuplicates Tracking 1038702 as yet unmatched pairs. 15640 records in RAM. INFO 2026-06-04 21:10:27 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:177,337,410 INFO 2026-06-04 21:10:27 MarkDuplicates Tracking 1036090 as yet unmatched pairs. 13019 records in RAM. INFO 2026-06-04 21:10:29 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:179,708,348 INFO 2026-06-04 21:10:29 MarkDuplicates Tracking 1034362 as yet unmatched pairs. 11287 records in RAM. INFO 2026-06-04 21:10:30 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,191 INFO 2026-06-04 21:10:30 MarkDuplicates Tracking 1031657 as yet unmatched pairs. 8577 records in RAM. INFO 2026-06-04 21:10:32 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,191 INFO 2026-06-04 21:10:32 MarkDuplicates Tracking 1039079 as yet unmatched pairs. 15990 records in RAM. INFO 2026-06-04 21:10:33 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,214 INFO 2026-06-04 21:10:33 MarkDuplicates Tracking 1024979 as yet unmatched pairs. 1885 records in RAM. INFO 2026-06-04 21:10:36 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr6:3,850,179 INFO 2026-06-04 21:10:36 MarkDuplicates Tracking 1022114 as yet unmatched pairs. 81926 records in RAM. INFO 2026-06-04 21:10:39 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:7,883,144 INFO 2026-06-04 21:10:39 MarkDuplicates Tracking 1019982 as yet unmatched pairs. 79782 records in RAM. INFO 2026-06-04 21:10:40 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:16,306,346 INFO 2026-06-04 21:10:40 MarkDuplicates Tracking 1017305 as yet unmatched pairs. 77097 records in RAM. INFO 2026-06-04 21:10:42 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,629 INFO 2026-06-04 21:10:42 MarkDuplicates Tracking 1014926 as yet unmatched pairs. 74708 records in RAM. INFO 2026-06-04 21:10:43 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,776 INFO 2026-06-04 21:10:43 MarkDuplicates Tracking 1014167 as yet unmatched pairs. 73949 records in RAM. INFO 2026-06-04 21:10:45 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:30,685,718 INFO 2026-06-04 21:10:45 MarkDuplicates Tracking 1010256 as yet unmatched pairs. 70035 records in RAM. INFO 2026-06-04 21:10:46 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,612 INFO 2026-06-04 21:10:46 MarkDuplicates Tracking 1009896 as yet unmatched pairs. 69672 records in RAM. INFO 2026-06-04 21:10:48 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:31,639,090 INFO 2026-06-04 21:10:48 MarkDuplicates Tracking 1005772 as yet unmatched pairs. 65544 records in RAM. INFO 2026-06-04 21:10:49 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,604 INFO 2026-06-04 21:10:49 MarkDuplicates Tracking 1003432 as yet unmatched pairs. 63200 records in RAM. INFO 2026-06-04 21:10:51 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:32,024,937 INFO 2026-06-04 21:10:51 MarkDuplicates Tracking 1002643 as yet unmatched pairs. 62408 records in RAM. INFO 2026-06-04 21:10:52 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:32,073,914 INFO 2026-06-04 21:10:52 MarkDuplicates Tracking 1000225 as yet unmatched pairs. 59988 records in RAM. INFO 2026-06-04 21:10:53 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:32,216,966 INFO 2026-06-04 21:10:53 MarkDuplicates Tracking 996842 as yet unmatched pairs. 56597 records in RAM. INFO 2026-06-04 21:10:55 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:32,830,642 INFO 2026-06-04 21:10:55 MarkDuplicates Tracking 994608 as yet unmatched pairs. 54360 records in RAM. INFO 2026-06-04 21:10:57 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:33,086,656 INFO 2026-06-04 21:10:57 MarkDuplicates Tracking 992117 as yet unmatched pairs. 51866 records in RAM. INFO 2026-06-04 21:10:58 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:33,432,684 INFO 2026-06-04 21:10:58 MarkDuplicates Tracking 989494 as yet unmatched pairs. 49241 records in RAM. INFO 2026-06-04 21:10:59 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:35,243,641 INFO 2026-06-04 21:10:59 MarkDuplicates Tracking 986796 as yet unmatched pairs. 46532 records in RAM. INFO 2026-06-04 21:11:01 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:37,008,958 INFO 2026-06-04 21:11:01 MarkDuplicates Tracking 984491 as yet unmatched pairs. 44215 records in RAM. INFO 2026-06-04 21:11:03 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr6:41,742,326 INFO 2026-06-04 21:11:03 MarkDuplicates Tracking 987303 as yet unmatched pairs. 47016 records in RAM. INFO 2026-06-04 21:11:04 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:43,047,002 INFO 2026-06-04 21:11:04 MarkDuplicates Tracking 979465 as yet unmatched pairs. 39174 records in RAM. INFO 2026-06-04 21:11:06 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:44,250,518 INFO 2026-06-04 21:11:06 MarkDuplicates Tracking 977455 as yet unmatched pairs. 37156 records in RAM. INFO 2026-06-04 21:11:08 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:51,748,342 INFO 2026-06-04 21:11:08 MarkDuplicates Tracking 974486 as yet unmatched pairs. 34174 records in RAM. INFO 2026-06-04 21:11:10 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr6:56,607,630 INFO 2026-06-04 21:11:10 MarkDuplicates Tracking 972596 as yet unmatched pairs. 32278 records in RAM. INFO 2026-06-04 21:11:12 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:75,241,218 INFO 2026-06-04 21:11:12 MarkDuplicates Tracking 970073 as yet unmatched pairs. 29739 records in RAM. INFO 2026-06-04 21:11:13 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,419 INFO 2026-06-04 21:11:13 MarkDuplicates Tracking 968466 as yet unmatched pairs. 28120 records in RAM. INFO 2026-06-04 21:11:15 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:108,664,096 INFO 2026-06-04 21:11:15 MarkDuplicates Tracking 965854 as yet unmatched pairs. 25489 records in RAM. INFO 2026-06-04 21:11:16 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:117,288,545 INFO 2026-06-04 21:11:16 MarkDuplicates Tracking 963650 as yet unmatched pairs. 23269 records in RAM. INFO 2026-06-04 21:11:17 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:117,998,959 INFO 2026-06-04 21:11:17 MarkDuplicates Tracking 960977 as yet unmatched pairs. 20588 records in RAM. INFO 2026-06-04 21:11:19 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:130,869,812 INFO 2026-06-04 21:11:19 MarkDuplicates Tracking 958921 as yet unmatched pairs. 18518 records in RAM. INFO 2026-06-04 21:11:21 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:137,203,575 INFO 2026-06-04 21:11:21 MarkDuplicates Tracking 956634 as yet unmatched pairs. 16217 records in RAM. INFO 2026-06-04 21:11:22 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:143,941,641 INFO 2026-06-04 21:11:22 MarkDuplicates Tracking 953684 as yet unmatched pairs. 13263 records in RAM. INFO 2026-06-04 21:11:24 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:149,793,556 INFO 2026-06-04 21:11:24 MarkDuplicates Tracking 951594 as yet unmatched pairs. 11163 records in RAM. INFO 2026-06-04 21:11:25 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:152,721,967 INFO 2026-06-04 21:11:25 MarkDuplicates Tracking 949197 as yet unmatched pairs. 8763 records in RAM. INFO 2026-06-04 21:11:26 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,352 INFO 2026-06-04 21:11:26 MarkDuplicates Tracking 949049 as yet unmatched pairs. 8608 records in RAM. INFO 2026-06-04 21:11:28 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:160,010,712 INFO 2026-06-04 21:11:28 MarkDuplicates Tracking 944354 as yet unmatched pairs. 3913 records in RAM. INFO 2026-06-04 21:11:30 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:167,962,444 INFO 2026-06-04 21:11:30 MarkDuplicates Tracking 941747 as yet unmatched pairs. 1301 records in RAM. INFO 2026-06-04 21:11:32 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr7:2,374,564 INFO 2026-06-04 21:11:32 MarkDuplicates Tracking 938979 as yet unmatched pairs. 65327 records in RAM. INFO 2026-06-04 21:12:35 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 63s. Last read position: chr7:5,421,200 INFO 2026-06-04 21:12:35 MarkDuplicates Tracking 936110 as yet unmatched pairs. 62443 records in RAM. INFO 2026-06-04 21:12:37 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,302 INFO 2026-06-04 21:12:37 MarkDuplicates Tracking 938964 as yet unmatched pairs. 65294 records in RAM. INFO 2026-06-04 21:12:38 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:13,931,668 INFO 2026-06-04 21:12:38 MarkDuplicates Tracking 931348 as yet unmatched pairs. 57672 records in RAM. INFO 2026-06-04 21:12:40 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:26,193,267 INFO 2026-06-04 21:12:40 MarkDuplicates Tracking 928699 as yet unmatched pairs. 55017 records in RAM. INFO 2026-06-04 21:12:42 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:32,988,562 INFO 2026-06-04 21:12:42 MarkDuplicates Tracking 926308 as yet unmatched pairs. 52615 records in RAM. INFO 2026-06-04 21:12:43 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:44,073,917 INFO 2026-06-04 21:12:43 MarkDuplicates Tracking 923844 as yet unmatched pairs. 50140 records in RAM. INFO 2026-06-04 21:12:45 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:44,697,002 INFO 2026-06-04 21:12:45 MarkDuplicates Tracking 921461 as yet unmatched pairs. 47749 records in RAM. INFO 2026-06-04 21:12:47 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:55,154,015 INFO 2026-06-04 21:12:47 MarkDuplicates Tracking 918854 as yet unmatched pairs. 45134 records in RAM. INFO 2026-06-04 21:12:48 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:66,633,333 INFO 2026-06-04 21:12:48 MarkDuplicates Tracking 916305 as yet unmatched pairs. 42578 records in RAM. INFO 2026-06-04 21:12:49 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,631 INFO 2026-06-04 21:12:49 MarkDuplicates Tracking 914968 as yet unmatched pairs. 41239 records in RAM. INFO 2026-06-04 21:12:51 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:74,736,662 INFO 2026-06-04 21:12:51 MarkDuplicates Tracking 912194 as yet unmatched pairs. 38460 records in RAM. INFO 2026-06-04 21:12:52 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:76,058,007 INFO 2026-06-04 21:12:52 MarkDuplicates Tracking 910664 as yet unmatched pairs. 36929 records in RAM. INFO 2026-06-04 21:12:54 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:80,744,998 INFO 2026-06-04 21:12:54 MarkDuplicates Tracking 908399 as yet unmatched pairs. 34653 records in RAM. INFO 2026-06-04 21:12:55 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:92,102,745 INFO 2026-06-04 21:12:55 MarkDuplicates Tracking 906808 as yet unmatched pairs. 33053 records in RAM. INFO 2026-06-04 21:12:57 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:95,111,300 INFO 2026-06-04 21:12:57 MarkDuplicates Tracking 903722 as yet unmatched pairs. 29964 records in RAM. INFO 2026-06-04 21:12:59 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:99,385,712 INFO 2026-06-04 21:12:59 MarkDuplicates Tracking 901485 as yet unmatched pairs. 27722 records in RAM. INFO 2026-06-04 21:13:00 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,576,259 INFO 2026-06-04 21:13:00 MarkDuplicates Tracking 898689 as yet unmatched pairs. 24919 records in RAM. INFO 2026-06-04 21:13:01 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:102,353,346 INFO 2026-06-04 21:13:01 MarkDuplicates Tracking 896084 as yet unmatched pairs. 22309 records in RAM. INFO 2026-06-04 21:13:03 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:105,040,890 INFO 2026-06-04 21:13:03 MarkDuplicates Tracking 896167 as yet unmatched pairs. 22387 records in RAM. INFO 2026-06-04 21:13:04 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr7:107,978,132 INFO 2026-06-04 21:13:04 MarkDuplicates Tracking 893029 as yet unmatched pairs. 19247 records in RAM. INFO 2026-06-04 21:13:06 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr7:120,788,684 INFO 2026-06-04 21:13:06 MarkDuplicates Tracking 890491 as yet unmatched pairs. 16698 records in RAM. INFO 2026-06-04 21:13:08 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr7:128,091,848 INFO 2026-06-04 21:13:08 MarkDuplicates Tracking 888254 as yet unmatched pairs. 14458 records in RAM. INFO 2026-06-04 21:13:09 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:134,965,306 INFO 2026-06-04 21:13:09 MarkDuplicates Tracking 886257 as yet unmatched pairs. 12448 records in RAM. INFO 2026-06-04 21:13:10 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:139,028,733 INFO 2026-06-04 21:13:10 MarkDuplicates Tracking 883467 as yet unmatched pairs. 9658 records in RAM. INFO 2026-06-04 21:13:12 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:142,772,157 INFO 2026-06-04 21:13:12 MarkDuplicates Tracking 880986 as yet unmatched pairs. 7161 records in RAM. INFO 2026-06-04 21:13:13 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:149,028,322 INFO 2026-06-04 21:13:13 MarkDuplicates Tracking 879097 as yet unmatched pairs. 5265 records in RAM. INFO 2026-06-04 21:13:15 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:151,349,071 INFO 2026-06-04 21:13:15 MarkDuplicates Tracking 876244 as yet unmatched pairs. 2402 records in RAM. INFO 2026-06-04 21:13:16 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:158,913,082 INFO 2026-06-04 21:13:16 MarkDuplicates Tracking 873973 as yet unmatched pairs. 118 records in RAM. INFO 2026-06-04 21:13:18 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:13,132,880 INFO 2026-06-04 21:13:18 MarkDuplicates Tracking 871595 as yet unmatched pairs. 54196 records in RAM. INFO 2026-06-04 21:13:19 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:20,211,306 INFO 2026-06-04 21:13:19 MarkDuplicates Tracking 869335 as yet unmatched pairs. 51924 records in RAM. INFO 2026-06-04 21:13:21 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:22,163,110 INFO 2026-06-04 21:13:21 MarkDuplicates Tracking 880154 as yet unmatched pairs. 62743 records in RAM. INFO 2026-06-04 21:13:22 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:22,163,888 INFO 2026-06-04 21:13:22 MarkDuplicates Tracking 872807 as yet unmatched pairs. 55394 records in RAM. INFO 2026-06-04 21:13:24 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:22,247,857 INFO 2026-06-04 21:13:24 MarkDuplicates Tracking 860761 as yet unmatched pairs. 43346 records in RAM. INFO 2026-06-04 21:13:25 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:23,289,120 INFO 2026-06-04 21:13:25 MarkDuplicates Tracking 858311 as yet unmatched pairs. 40890 records in RAM. INFO 2026-06-04 21:13:27 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:27,921,609 INFO 2026-06-04 21:13:27 MarkDuplicates Tracking 855825 as yet unmatched pairs. 38396 records in RAM. INFO 2026-06-04 21:13:28 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:37,835,588 INFO 2026-06-04 21:13:28 MarkDuplicates Tracking 853465 as yet unmatched pairs. 36022 records in RAM. INFO 2026-06-04 21:13:29 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:38,787,712 INFO 2026-06-04 21:13:29 MarkDuplicates Tracking 854791 as yet unmatched pairs. 37343 records in RAM. INFO 2026-06-04 21:13:31 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:38,952,273 INFO 2026-06-04 21:13:31 MarkDuplicates Tracking 849028 as yet unmatched pairs. 31569 records in RAM. INFO 2026-06-04 21:13:32 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,477 INFO 2026-06-04 21:13:32 MarkDuplicates Tracking 847687 as yet unmatched pairs. 30219 records in RAM. INFO 2026-06-04 21:13:34 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:58,416,930 INFO 2026-06-04 21:13:34 MarkDuplicates Tracking 843666 as yet unmatched pairs. 26189 records in RAM. INFO 2026-06-04 21:13:35 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:70,144,360 INFO 2026-06-04 21:13:35 MarkDuplicates Tracking 841531 as yet unmatched pairs. 24039 records in RAM. INFO 2026-06-04 21:13:37 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:86,548,363 INFO 2026-06-04 21:13:37 MarkDuplicates Tracking 839808 as yet unmatched pairs. 22306 records in RAM. INFO 2026-06-04 21:13:38 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:99,442,470 INFO 2026-06-04 21:13:38 MarkDuplicates Tracking 837146 as yet unmatched pairs. 19638 records in RAM. INFO 2026-06-04 21:13:40 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:102,652,168 INFO 2026-06-04 21:13:40 MarkDuplicates Tracking 834903 as yet unmatched pairs. 17392 records in RAM. INFO 2026-06-04 21:13:41 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:119,583,784 INFO 2026-06-04 21:13:41 MarkDuplicates Tracking 832443 as yet unmatched pairs. 14921 records in RAM. INFO 2026-06-04 21:13:43 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:131,976,054 INFO 2026-06-04 21:13:43 MarkDuplicates Tracking 829847 as yet unmatched pairs. 12315 records in RAM. INFO 2026-06-04 21:13:44 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,567,664 INFO 2026-06-04 21:13:44 MarkDuplicates Tracking 827130 as yet unmatched pairs. 9587 records in RAM. INFO 2026-06-04 21:13:45 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,502 INFO 2026-06-04 21:13:45 MarkDuplicates Tracking 825202 as yet unmatched pairs. 7652 records in RAM. INFO 2026-06-04 21:13:46 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,581 INFO 2026-06-04 21:13:46 MarkDuplicates Tracking 824038 as yet unmatched pairs. 6487 records in RAM. INFO 2026-06-04 21:13:48 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:144,053,197 INFO 2026-06-04 21:13:48 MarkDuplicates Tracking 820324 as yet unmatched pairs. 2766 records in RAM. INFO 2026-06-04 21:13:50 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:172,087 INFO 2026-06-04 21:13:50 MarkDuplicates Tracking 817546 as yet unmatched pairs. 54647 records in RAM. INFO 2026-06-04 21:13:51 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,109 INFO 2026-06-04 21:13:51 MarkDuplicates Tracking 815307 as yet unmatched pairs. 52403 records in RAM. INFO 2026-06-04 21:13:53 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:19,358,075 INFO 2026-06-04 21:13:53 MarkDuplicates Tracking 813084 as yet unmatched pairs. 50170 records in RAM. INFO 2026-06-04 21:13:54 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:33,443,321 INFO 2026-06-04 21:13:54 MarkDuplicates Tracking 811656 as yet unmatched pairs. 48731 records in RAM. INFO 2026-06-04 21:13:56 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:35,397,209 INFO 2026-06-04 21:13:56 MarkDuplicates Tracking 808453 as yet unmatched pairs. 45517 records in RAM. INFO 2026-06-04 21:13:57 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:36,150,927 INFO 2026-06-04 21:13:57 MarkDuplicates Tracking 805609 as yet unmatched pairs. 42669 records in RAM. INFO 2026-06-04 21:13:58 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:70,282,421 INFO 2026-06-04 21:13:58 MarkDuplicates Tracking 803532 as yet unmatched pairs. 40572 records in RAM. INFO 2026-06-04 21:14:00 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:83,679,784 INFO 2026-06-04 21:14:00 MarkDuplicates Tracking 801507 as yet unmatched pairs. 38539 records in RAM. INFO 2026-06-04 21:14:01 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:92,315,083 INFO 2026-06-04 21:14:01 MarkDuplicates Tracking 798960 as yet unmatched pairs. 35988 records in RAM. INFO 2026-06-04 21:14:03 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:97,648,065 INFO 2026-06-04 21:14:03 MarkDuplicates Tracking 796422 as yet unmatched pairs. 33436 records in RAM. INFO 2026-06-04 21:14:04 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:107,485,759 INFO 2026-06-04 21:14:04 MarkDuplicates Tracking 794279 as yet unmatched pairs. 31285 records in RAM. INFO 2026-06-04 21:14:05 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:112,268,111 INFO 2026-06-04 21:14:05 MarkDuplicates Tracking 791971 as yet unmatched pairs. 28966 records in RAM. INFO 2026-06-04 21:14:07 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:115,041,018 INFO 2026-06-04 21:14:07 MarkDuplicates Tracking 789172 as yet unmatched pairs. 26164 records in RAM. INFO 2026-06-04 21:14:09 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:121,321,359 INFO 2026-06-04 21:14:09 MarkDuplicates Tracking 787142 as yet unmatched pairs. 24125 records in RAM. INFO 2026-06-04 21:14:10 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:125,239,288 INFO 2026-06-04 21:14:10 MarkDuplicates Tracking 784066 as yet unmatched pairs. 21037 records in RAM. INFO 2026-06-04 21:14:12 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:127,818,184 INFO 2026-06-04 21:14:12 MarkDuplicates Tracking 782028 as yet unmatched pairs. 18986 records in RAM. INFO 2026-06-04 21:14:13 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:128,611,712 INFO 2026-06-04 21:14:13 MarkDuplicates Tracking 778973 as yet unmatched pairs. 15925 records in RAM. INFO 2026-06-04 21:14:15 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:130,835,380 INFO 2026-06-04 21:14:15 MarkDuplicates Tracking 776343 as yet unmatched pairs. 13293 records in RAM. INFO 2026-06-04 21:14:16 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:132,283,349 INFO 2026-06-04 21:14:16 MarkDuplicates Tracking 773622 as yet unmatched pairs. 10568 records in RAM. INFO 2026-06-04 21:14:17 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:134,050,444 INFO 2026-06-04 21:14:17 MarkDuplicates Tracking 771491 as yet unmatched pairs. 8430 records in RAM. INFO 2026-06-04 21:14:19 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,238 INFO 2026-06-04 21:14:19 MarkDuplicates Tracking 768783 as yet unmatched pairs. 5715 records in RAM. INFO 2026-06-04 21:14:20 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:136,980,836 INFO 2026-06-04 21:14:20 MarkDuplicates Tracking 766228 as yet unmatched pairs. 3147 records in RAM. INFO 2026-06-04 21:14:22 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:413,912 INFO 2026-06-04 21:14:22 MarkDuplicates Tracking 762927 as yet unmatched pairs. 48496 records in RAM. INFO 2026-06-04 21:14:23 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:7,798,985 INFO 2026-06-04 21:14:23 MarkDuplicates Tracking 760518 as yet unmatched pairs. 46085 records in RAM. INFO 2026-06-04 21:14:25 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:17,236,302 INFO 2026-06-04 21:14:25 MarkDuplicates Tracking 761636 as yet unmatched pairs. 47186 records in RAM. INFO 2026-06-04 21:14:26 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:27,219,800 INFO 2026-06-04 21:14:26 MarkDuplicates Tracking 755783 as yet unmatched pairs. 41324 records in RAM. INFO 2026-06-04 21:14:28 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:32,035,659 INFO 2026-06-04 21:14:28 MarkDuplicates Tracking 754789 as yet unmatched pairs. 40324 records in RAM. INFO 2026-06-04 21:14:29 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:42,567,098 INFO 2026-06-04 21:14:29 MarkDuplicates Tracking 751002 as yet unmatched pairs. 36529 records in RAM. INFO 2026-06-04 21:14:31 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,832 INFO 2026-06-04 21:14:31 MarkDuplicates Tracking 750225 as yet unmatched pairs. 35747 records in RAM. INFO 2026-06-04 21:14:32 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:50,991,422 INFO 2026-06-04 21:14:32 MarkDuplicates Tracking 747238 as yet unmatched pairs. 32749 records in RAM. INFO 2026-06-04 21:14:33 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:63,207,377 INFO 2026-06-04 21:14:33 MarkDuplicates Tracking 745024 as yet unmatched pairs. 30531 records in RAM. INFO 2026-06-04 21:14:35 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:71,510,092 INFO 2026-06-04 21:14:35 MarkDuplicates Tracking 742349 as yet unmatched pairs. 27843 records in RAM. INFO 2026-06-04 21:14:36 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:73,797,551 INFO 2026-06-04 21:14:36 MarkDuplicates Tracking 740021 as yet unmatched pairs. 25509 records in RAM. INFO 2026-06-04 21:14:38 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:79,277,279 INFO 2026-06-04 21:14:38 MarkDuplicates Tracking 737763 as yet unmatched pairs. 23246 records in RAM. INFO 2026-06-04 21:14:39 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:79,612,337 INFO 2026-06-04 21:14:39 MarkDuplicates Tracking 737373 as yet unmatched pairs. 22848 records in RAM. INFO 2026-06-04 21:14:41 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:86,945,370 INFO 2026-06-04 21:14:41 MarkDuplicates Tracking 733542 as yet unmatched pairs. 19007 records in RAM. INFO 2026-06-04 21:14:42 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:91,859,570 INFO 2026-06-04 21:14:42 MarkDuplicates Tracking 731455 as yet unmatched pairs. 16911 records in RAM. INFO 2026-06-04 21:14:43 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:96,560,428 INFO 2026-06-04 21:14:43 MarkDuplicates Tracking 729335 as yet unmatched pairs. 14783 records in RAM. INFO 2026-06-04 21:14:45 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:101,038,585 INFO 2026-06-04 21:14:45 MarkDuplicates Tracking 726635 as yet unmatched pairs. 12079 records in RAM. INFO 2026-06-04 21:14:47 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:103,438,025 INFO 2026-06-04 21:14:47 MarkDuplicates Tracking 723949 as yet unmatched pairs. 9386 records in RAM. INFO 2026-06-04 21:14:48 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:113,908,349 INFO 2026-06-04 21:14:48 MarkDuplicates Tracking 721855 as yet unmatched pairs. 7289 records in RAM. INFO 2026-06-04 21:14:50 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:119,892,845 INFO 2026-06-04 21:14:50 MarkDuplicates Tracking 719677 as yet unmatched pairs. 5094 records in RAM. INFO 2026-06-04 21:14:52 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:122,583,082 INFO 2026-06-04 21:14:52 MarkDuplicates Tracking 717317 as yet unmatched pairs. 2727 records in RAM. INFO 2026-06-04 21:14:53 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:133,283,142 INFO 2026-06-04 21:14:53 MarkDuplicates Tracking 715006 as yet unmatched pairs. 401 records in RAM. INFO 2026-06-04 21:14:55 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr11:397,137 INFO 2026-06-04 21:14:55 MarkDuplicates Tracking 712631 as yet unmatched pairs. 82528 records in RAM. INFO 2026-06-04 21:14:57 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:981,217 INFO 2026-06-04 21:14:57 MarkDuplicates Tracking 709761 as yet unmatched pairs. 79657 records in RAM. INFO 2026-06-04 21:14:58 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,436 INFO 2026-06-04 21:14:58 MarkDuplicates Tracking 707952 as yet unmatched pairs. 77841 records in RAM. INFO 2026-06-04 21:15:00 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:5,709,469 INFO 2026-06-04 21:15:00 MarkDuplicates Tracking 705815 as yet unmatched pairs. 75700 records in RAM. INFO 2026-06-04 21:15:01 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:8,731,135 INFO 2026-06-04 21:15:01 MarkDuplicates Tracking 702187 as yet unmatched pairs. 72072 records in RAM. INFO 2026-06-04 21:15:03 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:12,208,060 INFO 2026-06-04 21:15:03 MarkDuplicates Tracking 699667 as yet unmatched pairs. 69540 records in RAM. INFO 2026-06-04 21:15:04 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:18,514,680 INFO 2026-06-04 21:15:04 MarkDuplicates Tracking 697243 as yet unmatched pairs. 67109 records in RAM. INFO 2026-06-04 21:15:06 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:34,082,999 INFO 2026-06-04 21:15:06 MarkDuplicates Tracking 695361 as yet unmatched pairs. 65216 records in RAM. INFO 2026-06-04 21:15:07 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:45,924,153 INFO 2026-06-04 21:15:07 MarkDuplicates Tracking 692441 as yet unmatched pairs. 62293 records in RAM. INFO 2026-06-04 21:15:09 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:47,573,770 INFO 2026-06-04 21:15:09 MarkDuplicates Tracking 689957 as yet unmatched pairs. 59794 records in RAM. INFO 2026-06-04 21:15:10 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:57,600,206 INFO 2026-06-04 21:15:10 MarkDuplicates Tracking 688231 as yet unmatched pairs. 58060 records in RAM. INFO 2026-06-04 21:15:12 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:60,773,475 INFO 2026-06-04 21:15:12 MarkDuplicates Tracking 685291 as yet unmatched pairs. 55120 records in RAM. INFO 2026-06-04 21:15:13 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:62,422,309 INFO 2026-06-04 21:15:13 MarkDuplicates Tracking 684656 as yet unmatched pairs. 54466 records in RAM. INFO 2026-06-04 21:15:15 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,174 INFO 2026-06-04 21:15:15 MarkDuplicates Tracking 681654 as yet unmatched pairs. 51459 records in RAM. INFO 2026-06-04 21:15:16 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,326 INFO 2026-06-04 21:15:16 MarkDuplicates Tracking 680305 as yet unmatched pairs. 50110 records in RAM. INFO 2026-06-04 21:15:18 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,605,097 INFO 2026-06-04 21:15:18 MarkDuplicates Tracking 676558 as yet unmatched pairs. 46362 records in RAM. INFO 2026-06-04 21:15:19 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:64,211,736 INFO 2026-06-04 21:15:19 MarkDuplicates Tracking 673925 as yet unmatched pairs. 43727 records in RAM. INFO 2026-06-04 21:15:21 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:65,111,366 INFO 2026-06-04 21:15:21 MarkDuplicates Tracking 671197 as yet unmatched pairs. 40999 records in RAM. INFO 2026-06-04 21:15:22 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,823 INFO 2026-06-04 21:15:22 MarkDuplicates Tracking 668381 as yet unmatched pairs. 38143 records in RAM. INFO 2026-06-04 21:15:23 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,637 INFO 2026-06-04 21:15:23 MarkDuplicates Tracking 665580 as yet unmatched pairs. 35339 records in RAM. INFO 2026-06-04 21:15:25 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:67,421,067 INFO 2026-06-04 21:15:25 MarkDuplicates Tracking 662770 as yet unmatched pairs. 32520 records in RAM. INFO 2026-06-04 21:15:26 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,573 INFO 2026-06-04 21:15:26 MarkDuplicates Tracking 660292 as yet unmatched pairs. 30032 records in RAM. INFO 2026-06-04 21:15:28 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,633 INFO 2026-06-04 21:15:28 MarkDuplicates Tracking 657972 as yet unmatched pairs. 27712 records in RAM. INFO 2026-06-04 21:15:29 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:73,365,799 INFO 2026-06-04 21:15:29 MarkDuplicates Tracking 655158 as yet unmatched pairs. 24894 records in RAM. INFO 2026-06-04 21:15:31 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:77,667,316 INFO 2026-06-04 21:15:31 MarkDuplicates Tracking 652588 as yet unmatched pairs. 22306 records in RAM. INFO 2026-06-04 21:15:33 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:92,774,168 INFO 2026-06-04 21:15:33 MarkDuplicates Tracking 650217 as yet unmatched pairs. 19932 records in RAM. INFO 2026-06-04 21:15:35 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:102,185,968 INFO 2026-06-04 21:15:35 MarkDuplicates Tracking 648951 as yet unmatched pairs. 18648 records in RAM. INFO 2026-06-04 21:15:36 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:111,720,714 INFO 2026-06-04 21:15:36 MarkDuplicates Tracking 645591 as yet unmatched pairs. 15282 records in RAM. INFO 2026-06-04 21:15:38 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:114,251,154 INFO 2026-06-04 21:15:38 MarkDuplicates Tracking 645818 as yet unmatched pairs. 15499 records in RAM. INFO 2026-06-04 21:15:39 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:117,184,130 INFO 2026-06-04 21:15:39 MarkDuplicates Tracking 641046 as yet unmatched pairs. 10723 records in RAM. INFO 2026-06-04 21:15:41 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:118,628,065 INFO 2026-06-04 21:15:41 MarkDuplicates Tracking 638314 as yet unmatched pairs. 7991 records in RAM. INFO 2026-06-04 21:15:42 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:120,465,274 INFO 2026-06-04 21:15:42 MarkDuplicates Tracking 636130 as yet unmatched pairs. 5799 records in RAM. INFO 2026-06-04 21:15:44 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:126,271,323 INFO 2026-06-04 21:15:44 MarkDuplicates Tracking 633426 as yet unmatched pairs. 3090 records in RAM. INFO 2026-06-04 21:15:46 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:130,427,668 INFO 2026-06-04 21:15:46 MarkDuplicates Tracking 631108 as yet unmatched pairs. 765 records in RAM. INFO 2026-06-04 21:15:48 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr12:885,582 INFO 2026-06-04 21:15:48 MarkDuplicates Tracking 629052 as yet unmatched pairs. 81475 records in RAM. INFO 2026-06-04 21:15:49 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:6,018,897 INFO 2026-06-04 21:15:49 MarkDuplicates Tracking 626451 as yet unmatched pairs. 78865 records in RAM. INFO 2026-06-04 21:15:51 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:6,566,265 INFO 2026-06-04 21:15:51 MarkDuplicates Tracking 623332 as yet unmatched pairs. 75743 records in RAM. INFO 2026-06-04 21:15:52 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:6,967,950 INFO 2026-06-04 21:15:52 MarkDuplicates Tracking 621022 as yet unmatched pairs. 73425 records in RAM. INFO 2026-06-04 21:15:54 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:8,773,825 INFO 2026-06-04 21:15:54 MarkDuplicates Tracking 618428 as yet unmatched pairs. 70827 records in RAM. INFO 2026-06-04 21:15:55 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:9,077,827 INFO 2026-06-04 21:15:55 MarkDuplicates Tracking 620468 as yet unmatched pairs. 72867 records in RAM. INFO 2026-06-04 21:15:56 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:9,109,373 INFO 2026-06-04 21:15:56 MarkDuplicates Tracking 618760 as yet unmatched pairs. 71157 records in RAM. INFO 2026-06-04 21:15:58 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:11,890,985 INFO 2026-06-04 21:15:58 MarkDuplicates Tracking 611683 as yet unmatched pairs. 64076 records in RAM. INFO 2026-06-04 21:15:59 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:15,665,853 INFO 2026-06-04 21:15:59 MarkDuplicates Tracking 609404 as yet unmatched pairs. 61790 records in RAM. INFO 2026-06-04 21:16:01 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:29,311,071 INFO 2026-06-04 21:16:01 MarkDuplicates Tracking 607110 as yet unmatched pairs. 59490 records in RAM. INFO 2026-06-04 21:16:02 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:42,313,053 INFO 2026-06-04 21:16:02 MarkDuplicates Tracking 604843 as yet unmatched pairs. 57213 records in RAM. INFO 2026-06-04 21:16:04 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:48,778,156 INFO 2026-06-04 21:16:04 MarkDuplicates Tracking 602546 as yet unmatched pairs. 54914 records in RAM. INFO 2026-06-04 21:16:05 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,178 INFO 2026-06-04 21:16:05 MarkDuplicates Tracking 600636 as yet unmatched pairs. 53004 records in RAM. INFO 2026-06-04 21:16:06 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:51,238,903 INFO 2026-06-04 21:16:06 MarkDuplicates Tracking 598046 as yet unmatched pairs. 50413 records in RAM. INFO 2026-06-04 21:16:08 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:53,039,302 INFO 2026-06-04 21:16:08 MarkDuplicates Tracking 595769 as yet unmatched pairs. 48135 records in RAM. INFO 2026-06-04 21:16:09 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:53,458,146 INFO 2026-06-04 21:16:09 MarkDuplicates Tracking 592928 as yet unmatched pairs. 45292 records in RAM. INFO 2026-06-04 21:16:11 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:54,374,120 INFO 2026-06-04 21:16:11 MarkDuplicates Tracking 590388 as yet unmatched pairs. 42752 records in RAM. INFO 2026-06-04 21:16:12 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,673 INFO 2026-06-04 21:16:12 MarkDuplicates Tracking 588721 as yet unmatched pairs. 41084 records in RAM. INFO 2026-06-04 21:16:14 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,672,799 INFO 2026-06-04 21:16:14 MarkDuplicates Tracking 586151 as yet unmatched pairs. 38512 records in RAM. INFO 2026-06-04 21:16:16 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:57,106,763 INFO 2026-06-04 21:16:16 MarkDuplicates Tracking 583829 as yet unmatched pairs. 36188 records in RAM. INFO 2026-06-04 21:16:17 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:57,199,876 INFO 2026-06-04 21:16:17 MarkDuplicates Tracking 580954 as yet unmatched pairs. 33308 records in RAM. INFO 2026-06-04 21:16:19 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,719,035 INFO 2026-06-04 21:16:19 MarkDuplicates Tracking 578455 as yet unmatched pairs. 30808 records in RAM. INFO 2026-06-04 21:16:20 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:67,658,633 INFO 2026-06-04 21:16:20 MarkDuplicates Tracking 575927 as yet unmatched pairs. 28275 records in RAM. INFO 2026-06-04 21:16:22 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:75,480,903 INFO 2026-06-04 21:16:22 MarkDuplicates Tracking 573844 as yet unmatched pairs. 26190 records in RAM. INFO 2026-06-04 21:16:23 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,877 INFO 2026-06-04 21:16:23 MarkDuplicates Tracking 572919 as yet unmatched pairs. 25256 records in RAM. INFO 2026-06-04 21:16:25 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:96,002,972 INFO 2026-06-04 21:16:25 MarkDuplicates Tracking 570055 as yet unmatched pairs. 22390 records in RAM. INFO 2026-06-04 21:16:26 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:104,031,117 INFO 2026-06-04 21:16:26 MarkDuplicates Tracking 566863 as yet unmatched pairs. 19193 records in RAM. INFO 2026-06-04 21:16:27 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:109,469,554 INFO 2026-06-04 21:16:27 MarkDuplicates Tracking 564487 as yet unmatched pairs. 16809 records in RAM. INFO 2026-06-04 21:16:29 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:112,176,613 INFO 2026-06-04 21:16:29 MarkDuplicates Tracking 561931 as yet unmatched pairs. 14251 records in RAM. INFO 2026-06-04 21:16:31 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:116,008,660 INFO 2026-06-04 21:16:31 MarkDuplicates Tracking 559484 as yet unmatched pairs. 11804 records in RAM. INFO 2026-06-04 21:16:32 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:120,534,739 INFO 2026-06-04 21:16:32 MarkDuplicates Tracking 557042 as yet unmatched pairs. 9352 records in RAM. INFO 2026-06-04 21:16:33 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:122,860,400 INFO 2026-06-04 21:16:33 MarkDuplicates Tracking 554242 as yet unmatched pairs. 6546 records in RAM. INFO 2026-06-04 21:16:35 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:124,362,208 INFO 2026-06-04 21:16:35 MarkDuplicates Tracking 551767 as yet unmatched pairs. 4062 records in RAM. INFO 2026-06-04 21:16:36 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:132,525,801 INFO 2026-06-04 21:16:36 MarkDuplicates Tracking 549072 as yet unmatched pairs. 1365 records in RAM. INFO 2026-06-04 21:16:38 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr13:23,331,182 INFO 2026-06-04 21:16:38 MarkDuplicates Tracking 546589 as yet unmatched pairs. 23783 records in RAM. INFO 2026-06-04 21:16:39 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr13:32,535,870 INFO 2026-06-04 21:16:39 MarkDuplicates Tracking 544515 as yet unmatched pairs. 21699 records in RAM. INFO 2026-06-04 21:16:41 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr13:41,458,403 INFO 2026-06-04 21:16:41 MarkDuplicates Tracking 542652 as yet unmatched pairs. 19830 records in RAM. INFO 2026-06-04 21:16:42 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:47,948,947 INFO 2026-06-04 21:16:42 MarkDuplicates Tracking 539533 as yet unmatched pairs. 16708 records in RAM. INFO 2026-06-04 21:16:44 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr13:75,341,576 INFO 2026-06-04 21:16:44 MarkDuplicates Tracking 537304 as yet unmatched pairs. 14473 records in RAM. INFO 2026-06-04 21:16:45 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr13:79,322,362 INFO 2026-06-04 21:16:45 MarkDuplicates Tracking 534895 as yet unmatched pairs. 12063 records in RAM. INFO 2026-06-04 21:16:47 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr13:99,015,484 INFO 2026-06-04 21:16:47 MarkDuplicates Tracking 532548 as yet unmatched pairs. 9710 records in RAM. INFO 2026-06-04 21:16:48 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,655 INFO 2026-06-04 21:16:48 MarkDuplicates Tracking 529940 as yet unmatched pairs. 7093 records in RAM. INFO 2026-06-04 21:16:50 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr13:110,489,463 INFO 2026-06-04 21:16:50 MarkDuplicates Tracking 527925 as yet unmatched pairs. 5069 records in RAM. INFO 2026-06-04 21:16:51 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr13:113,218,941 INFO 2026-06-04 21:16:51 MarkDuplicates Tracking 524550 as yet unmatched pairs. 1685 records in RAM. INFO 2026-06-04 21:16:53 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:20,801,707 INFO 2026-06-04 21:16:53 MarkDuplicates Tracking 524260 as yet unmatched pairs. 50968 records in RAM. INFO 2026-06-04 21:16:54 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:22,830,057 INFO 2026-06-04 21:16:54 MarkDuplicates Tracking 519507 as yet unmatched pairs. 46213 records in RAM. INFO 2026-06-04 21:16:56 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr14:24,160,380 INFO 2026-06-04 21:16:56 MarkDuplicates Tracking 516889 as yet unmatched pairs. 43586 records in RAM. INFO 2026-06-04 21:16:57 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:32,091,782 INFO 2026-06-04 21:16:57 MarkDuplicates Tracking 514457 as yet unmatched pairs. 41149 records in RAM. INFO 2026-06-04 21:16:58 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:37,592,169 INFO 2026-06-04 21:16:58 MarkDuplicates Tracking 511621 as yet unmatched pairs. 38307 records in RAM. INFO 2026-06-04 21:17:00 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:50,771,371 INFO 2026-06-04 21:17:00 MarkDuplicates Tracking 509659 as yet unmatched pairs. 36322 records in RAM. INFO 2026-06-04 21:17:01 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:60,144,908 INFO 2026-06-04 21:17:01 MarkDuplicates Tracking 507277 as yet unmatched pairs. 33930 records in RAM. INFO 2026-06-04 21:17:03 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:67,279,164 INFO 2026-06-04 21:17:03 MarkDuplicates Tracking 504880 as yet unmatched pairs. 31530 records in RAM. INFO 2026-06-04 21:17:04 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:71,103,491 INFO 2026-06-04 21:17:04 MarkDuplicates Tracking 502424 as yet unmatched pairs. 29073 records in RAM. INFO 2026-06-04 21:17:06 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:74,486,399 INFO 2026-06-04 21:17:06 MarkDuplicates Tracking 500500 as yet unmatched pairs. 27146 records in RAM. INFO 2026-06-04 21:17:07 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:74,552,892 INFO 2026-06-04 21:17:07 MarkDuplicates Tracking 497916 as yet unmatched pairs. 24559 records in RAM. INFO 2026-06-04 21:17:08 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,558 INFO 2026-06-04 21:17:08 MarkDuplicates Tracking 496028 as yet unmatched pairs. 22670 records in RAM. INFO 2026-06-04 21:17:10 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,532 INFO 2026-06-04 21:17:10 MarkDuplicates Tracking 492176 as yet unmatched pairs. 18810 records in RAM. INFO 2026-06-04 21:17:11 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:93,242,681 INFO 2026-06-04 21:17:11 MarkDuplicates Tracking 489618 as yet unmatched pairs. 16251 records in RAM. INFO 2026-06-04 21:17:13 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:96,345,308 INFO 2026-06-04 21:17:13 MarkDuplicates Tracking 487279 as yet unmatched pairs. 13912 records in RAM. INFO 2026-06-04 21:17:14 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:102,044,402 INFO 2026-06-04 21:17:14 MarkDuplicates Tracking 485042 as yet unmatched pairs. 11658 records in RAM. INFO 2026-06-04 21:17:15 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:103,742,709 INFO 2026-06-04 21:17:15 MarkDuplicates Tracking 482054 as yet unmatched pairs. 8668 records in RAM. INFO 2026-06-04 21:17:17 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,126 INFO 2026-06-04 21:17:17 MarkDuplicates Tracking 480132 as yet unmatched pairs. 6745 records in RAM. INFO 2026-06-04 21:17:18 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,012 INFO 2026-06-04 21:17:18 MarkDuplicates Tracking 478215 as yet unmatched pairs. 4824 records in RAM. INFO 2026-06-04 21:17:20 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,364 INFO 2026-06-04 21:17:20 MarkDuplicates Tracking 477452 as yet unmatched pairs. 4060 records in RAM. INFO 2026-06-04 21:17:21 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:22,678,230 INFO 2026-06-04 21:17:21 MarkDuplicates Tracking 473191 as yet unmatched pairs. 50763 records in RAM. INFO 2026-06-04 21:17:23 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:29,761,221 INFO 2026-06-04 21:17:23 MarkDuplicates Tracking 471150 as yet unmatched pairs. 48719 records in RAM. INFO 2026-06-04 21:17:24 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr15:38,498,657 INFO 2026-06-04 21:17:24 MarkDuplicates Tracking 468993 as yet unmatched pairs. 46558 records in RAM. INFO 2026-06-04 21:17:26 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,986 INFO 2026-06-04 21:17:26 MarkDuplicates Tracking 466614 as yet unmatched pairs. 44179 records in RAM. INFO 2026-06-04 21:17:27 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr15:42,310,805 INFO 2026-06-04 21:17:27 MarkDuplicates Tracking 464140 as yet unmatched pairs. 41705 records in RAM. INFO 2026-06-04 21:17:28 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr15:43,768,552 INFO 2026-06-04 21:17:28 MarkDuplicates Tracking 462291 as yet unmatched pairs. 39855 records in RAM. INFO 2026-06-04 21:17:30 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr15:45,135,133 INFO 2026-06-04 21:17:30 MarkDuplicates Tracking 459725 as yet unmatched pairs. 37287 records in RAM. INFO 2026-06-04 21:17:31 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr15:48,992,312 INFO 2026-06-04 21:17:31 MarkDuplicates Tracking 457260 as yet unmatched pairs. 34821 records in RAM. INFO 2026-06-04 21:17:33 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr15:52,397,368 INFO 2026-06-04 21:17:33 MarkDuplicates Tracking 454614 as yet unmatched pairs. 32165 records in RAM. INFO 2026-06-04 21:17:34 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr15:58,610,431 INFO 2026-06-04 21:17:34 MarkDuplicates Tracking 452300 as yet unmatched pairs. 29847 records in RAM. INFO 2026-06-04 21:17:35 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr15:63,061,777 INFO 2026-06-04 21:17:35 MarkDuplicates Tracking 450293 as yet unmatched pairs. 27837 records in RAM. INFO 2026-06-04 21:17:37 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:65,093,138 INFO 2026-06-04 21:17:37 MarkDuplicates Tracking 447520 as yet unmatched pairs. 25063 records in RAM. INFO 2026-06-04 21:17:38 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:69,384,823 INFO 2026-06-04 21:17:38 MarkDuplicates Tracking 445024 as yet unmatched pairs. 22565 records in RAM. INFO 2026-06-04 21:17:40 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:73,176,400 INFO 2026-06-04 21:17:40 MarkDuplicates Tracking 442515 as yet unmatched pairs. 20054 records in RAM. INFO 2026-06-04 21:17:41 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr15:74,902,698 INFO 2026-06-04 21:17:41 MarkDuplicates Tracking 440175 as yet unmatched pairs. 17712 records in RAM. INFO 2026-06-04 21:17:42 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:77,056,158 INFO 2026-06-04 21:17:42 MarkDuplicates Tracking 437890 as yet unmatched pairs. 15424 records in RAM. INFO 2026-06-04 21:17:44 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr15:78,931,459 INFO 2026-06-04 21:17:44 MarkDuplicates Tracking 437811 as yet unmatched pairs. 15343 records in RAM. INFO 2026-06-04 21:17:45 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:82,538,898 INFO 2026-06-04 21:17:45 MarkDuplicates Tracking 433157 as yet unmatched pairs. 10687 records in RAM. INFO 2026-06-04 21:17:47 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:85,578,988 INFO 2026-06-04 21:17:47 MarkDuplicates Tracking 432327 as yet unmatched pairs. 9857 records in RAM. INFO 2026-06-04 21:17:48 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:85,730,593 INFO 2026-06-04 21:17:48 MarkDuplicates Tracking 429512 as yet unmatched pairs. 7041 records in RAM. INFO 2026-06-04 21:17:49 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:90,443,339 INFO 2026-06-04 21:17:49 MarkDuplicates Tracking 426403 as yet unmatched pairs. 3928 records in RAM. INFO 2026-06-04 21:17:51 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:96,332,030 INFO 2026-06-04 21:17:51 MarkDuplicates Tracking 423897 as yet unmatched pairs. 1422 records in RAM. INFO 2026-06-04 21:17:53 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr16:510,681 INFO 2026-06-04 21:17:53 MarkDuplicates Tracking 421415 as yet unmatched pairs. 72681 records in RAM. INFO 2026-06-04 21:17:54 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:1,241,472 INFO 2026-06-04 21:17:54 MarkDuplicates Tracking 419258 as yet unmatched pairs. 70523 records in RAM. INFO 2026-06-04 21:17:56 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:1,964,533 INFO 2026-06-04 21:17:56 MarkDuplicates Tracking 415976 as yet unmatched pairs. 67236 records in RAM. INFO 2026-06-04 21:17:57 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:2,281,092 INFO 2026-06-04 21:17:57 MarkDuplicates Tracking 413734 as yet unmatched pairs. 64994 records in RAM. INFO 2026-06-04 21:17:58 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,651 INFO 2026-06-04 21:17:58 MarkDuplicates Tracking 411323 as yet unmatched pairs. 62576 records in RAM. INFO 2026-06-04 21:18:00 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,376 INFO 2026-06-04 21:18:00 MarkDuplicates Tracking 409289 as yet unmatched pairs. 60537 records in RAM. INFO 2026-06-04 21:18:01 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:3,850,663 INFO 2026-06-04 21:18:01 MarkDuplicates Tracking 406140 as yet unmatched pairs. 57386 records in RAM. INFO 2026-06-04 21:18:03 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:5,056,108 INFO 2026-06-04 21:18:03 MarkDuplicates Tracking 403584 as yet unmatched pairs. 54827 records in RAM. INFO 2026-06-04 21:18:04 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:11,850,356 INFO 2026-06-04 21:18:04 MarkDuplicates Tracking 400889 as yet unmatched pairs. 52126 records in RAM. INFO 2026-06-04 21:18:05 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:14,918,763 INFO 2026-06-04 21:18:05 MarkDuplicates Tracking 399007 as yet unmatched pairs. 50244 records in RAM. INFO 2026-06-04 21:18:07 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:15,704,111 INFO 2026-06-04 21:18:07 MarkDuplicates Tracking 397564 as yet unmatched pairs. 48793 records in RAM. INFO 2026-06-04 21:18:08 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:16,317,505 INFO 2026-06-04 21:18:08 MarkDuplicates Tracking 395576 as yet unmatched pairs. 46801 records in RAM. INFO 2026-06-04 21:18:09 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:18,348,594 INFO 2026-06-04 21:18:09 MarkDuplicates Tracking 394970 as yet unmatched pairs. 46192 records in RAM. INFO 2026-06-04 21:18:10 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:18,852,395 INFO 2026-06-04 21:18:10 MarkDuplicates Tracking 393552 as yet unmatched pairs. 44774 records in RAM. INFO 2026-06-04 21:18:12 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:21,458,001 INFO 2026-06-04 21:18:12 MarkDuplicates Tracking 392164 as yet unmatched pairs. 43384 records in RAM. INFO 2026-06-04 21:18:13 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,771 INFO 2026-06-04 21:18:13 MarkDuplicates Tracking 390954 as yet unmatched pairs. 42174 records in RAM. INFO 2026-06-04 21:18:14 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:25,239,854 INFO 2026-06-04 21:18:14 MarkDuplicates Tracking 389369 as yet unmatched pairs. 40587 records in RAM. INFO 2026-06-04 21:18:15 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:28,727,110 INFO 2026-06-04 21:18:15 MarkDuplicates Tracking 387381 as yet unmatched pairs. 38598 records in RAM. INFO 2026-06-04 21:18:17 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,851 INFO 2026-06-04 21:18:17 MarkDuplicates Tracking 386458 as yet unmatched pairs. 37674 records in RAM. INFO 2026-06-04 21:18:18 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:29,985,741 INFO 2026-06-04 21:18:18 MarkDuplicates Tracking 383618 as yet unmatched pairs. 34830 records in RAM. INFO 2026-06-04 21:18:19 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,397,456 INFO 2026-06-04 21:18:19 MarkDuplicates Tracking 381749 as yet unmatched pairs. 32960 records in RAM. INFO 2026-06-04 21:18:21 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:30,965,104 INFO 2026-06-04 21:18:21 MarkDuplicates Tracking 379136 as yet unmatched pairs. 30345 records in RAM. INFO 2026-06-04 21:18:22 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:31,474,357 INFO 2026-06-04 21:18:22 MarkDuplicates Tracking 376540 as yet unmatched pairs. 27745 records in RAM. INFO 2026-06-04 21:18:24 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:53,157,208 INFO 2026-06-04 21:18:24 MarkDuplicates Tracking 374430 as yet unmatched pairs. 25629 records in RAM. INFO 2026-06-04 21:18:25 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:56,500,785 INFO 2026-06-04 21:18:25 MarkDuplicates Tracking 371784 as yet unmatched pairs. 22982 records in RAM. INFO 2026-06-04 21:18:27 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:57,766,944 INFO 2026-06-04 21:18:27 MarkDuplicates Tracking 369046 as yet unmatched pairs. 20242 records in RAM. INFO 2026-06-04 21:18:28 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:67,029,463 INFO 2026-06-04 21:18:28 MarkDuplicates Tracking 366438 as yet unmatched pairs. 17633 records in RAM. INFO 2026-06-04 21:18:29 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:67,946,185 INFO 2026-06-04 21:18:29 MarkDuplicates Tracking 363549 as yet unmatched pairs. 14739 records in RAM. INFO 2026-06-04 21:18:31 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:69,718,176 INFO 2026-06-04 21:18:31 MarkDuplicates Tracking 361231 as yet unmatched pairs. 12419 records in RAM. INFO 2026-06-04 21:18:33 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr16:71,789,442 INFO 2026-06-04 21:18:33 MarkDuplicates Tracking 358831 as yet unmatched pairs. 10017 records in RAM. INFO 2026-06-04 21:18:34 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:75,568,060 INFO 2026-06-04 21:18:34 MarkDuplicates Tracking 357317 as yet unmatched pairs. 8503 records in RAM. INFO 2026-06-04 21:18:36 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:85,661,016 INFO 2026-06-04 21:18:36 MarkDuplicates Tracking 353831 as yet unmatched pairs. 5006 records in RAM. INFO 2026-06-04 21:18:37 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:89,196,106 INFO 2026-06-04 21:18:37 MarkDuplicates Tracking 351894 as yet unmatched pairs. 3061 records in RAM. INFO 2026-06-04 21:18:40 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr17:1,031,525 INFO 2026-06-04 21:18:40 MarkDuplicates Tracking 348221 as yet unmatched pairs. 97207 records in RAM. INFO 2026-06-04 21:18:41 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:1,677,563 INFO 2026-06-04 21:18:41 MarkDuplicates Tracking 345899 as yet unmatched pairs. 94883 records in RAM. INFO 2026-06-04 21:19:41 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 59s. Last read position: chr17:4,050,910 INFO 2026-06-04 21:19:41 MarkDuplicates Tracking 342907 as yet unmatched pairs. 91891 records in RAM. INFO 2026-06-04 21:20:46 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 65s. Last read position: chr17:5,004,925 INFO 2026-06-04 21:20:46 MarkDuplicates Tracking 341081 as yet unmatched pairs. 90063 records in RAM. INFO 2026-06-04 21:20:48 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,611 INFO 2026-06-04 21:20:48 MarkDuplicates Tracking 338421 as yet unmatched pairs. 87402 records in RAM. INFO 2026-06-04 21:20:49 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:7,564,706 INFO 2026-06-04 21:20:49 MarkDuplicates Tracking 335283 as yet unmatched pairs. 84261 records in RAM. INFO 2026-06-04 21:20:51 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,949,117 INFO 2026-06-04 21:20:51 MarkDuplicates Tracking 332862 as yet unmatched pairs. 81839 records in RAM. INFO 2026-06-04 21:20:53 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:8,232,040 INFO 2026-06-04 21:20:53 MarkDuplicates Tracking 330416 as yet unmatched pairs. 79389 records in RAM. INFO 2026-06-04 21:20:54 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:15,259,119 INFO 2026-06-04 21:20:54 MarkDuplicates Tracking 330333 as yet unmatched pairs. 79303 records in RAM. INFO 2026-06-04 21:20:56 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:17,495,452 INFO 2026-06-04 21:20:56 MarkDuplicates Tracking 325704 as yet unmatched pairs. 74674 records in RAM. INFO 2026-06-04 21:20:57 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:19,385,200 INFO 2026-06-04 21:20:57 MarkDuplicates Tracking 323526 as yet unmatched pairs. 72492 records in RAM. INFO 2026-06-04 21:20:58 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:28,635,505 INFO 2026-06-04 21:20:58 MarkDuplicates Tracking 320679 as yet unmatched pairs. 69642 records in RAM. INFO 2026-06-04 21:21:00 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:30,184,767 INFO 2026-06-04 21:21:00 MarkDuplicates Tracking 318122 as yet unmatched pairs. 67083 records in RAM. INFO 2026-06-04 21:21:02 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:34,983,026 INFO 2026-06-04 21:21:02 MarkDuplicates Tracking 315669 as yet unmatched pairs. 64625 records in RAM. INFO 2026-06-04 21:21:04 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:36,575,157 INFO 2026-06-04 21:21:04 MarkDuplicates Tracking 313373 as yet unmatched pairs. 62329 records in RAM. INFO 2026-06-04 21:21:06 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,167 INFO 2026-06-04 21:21:06 MarkDuplicates Tracking 314554 as yet unmatched pairs. 63509 records in RAM. INFO 2026-06-04 21:21:08 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr17:39,712,188 INFO 2026-06-04 21:21:08 MarkDuplicates Tracking 309161 as yet unmatched pairs. 58115 records in RAM. INFO 2026-06-04 21:21:09 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr17:40,453,121 INFO 2026-06-04 21:21:09 MarkDuplicates Tracking 306031 as yet unmatched pairs. 54984 records in RAM. INFO 2026-06-04 21:21:10 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:42,333,916 INFO 2026-06-04 21:21:10 MarkDuplicates Tracking 303663 as yet unmatched pairs. 52615 records in RAM. INFO 2026-06-04 21:21:12 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr17:43,021,964 INFO 2026-06-04 21:21:12 MarkDuplicates Tracking 300936 as yet unmatched pairs. 49885 records in RAM. INFO 2026-06-04 21:21:14 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr17:44,851,774 INFO 2026-06-04 21:21:14 MarkDuplicates Tracking 298296 as yet unmatched pairs. 47238 records in RAM. INFO 2026-06-04 21:21:15 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr17:46,549,027 INFO 2026-06-04 21:21:15 MarkDuplicates Tracking 296588 as yet unmatched pairs. 45526 records in RAM. INFO 2026-06-04 21:21:16 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr17:48,910,847 INFO 2026-06-04 21:21:16 MarkDuplicates Tracking 294168 as yet unmatched pairs. 43106 records in RAM. INFO 2026-06-04 21:21:18 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,927 INFO 2026-06-04 21:21:18 MarkDuplicates Tracking 293313 as yet unmatched pairs. 42251 records in RAM. INFO 2026-06-04 21:21:20 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,010 INFO 2026-06-04 21:21:20 MarkDuplicates Tracking 292681 as yet unmatched pairs. 41619 records in RAM. INFO 2026-06-04 21:21:22 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,252 INFO 2026-06-04 21:21:22 MarkDuplicates Tracking 286993 as yet unmatched pairs. 35930 records in RAM. INFO 2026-06-04 21:21:24 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr17:51,161,186 INFO 2026-06-04 21:21:24 MarkDuplicates Tracking 283639 as yet unmatched pairs. 32572 records in RAM. INFO 2026-06-04 21:21:26 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 2s. Last read position: chr17:59,648,384 INFO 2026-06-04 21:21:26 MarkDuplicates Tracking 281936 as yet unmatched pairs. 30863 records in RAM. INFO 2026-06-04 21:21:28 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:61,408,443 INFO 2026-06-04 21:21:28 MarkDuplicates Tracking 278744 as yet unmatched pairs. 27671 records in RAM. INFO 2026-06-04 21:21:29 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:63,818,062 INFO 2026-06-04 21:21:29 MarkDuplicates Tracking 276294 as yet unmatched pairs. 25221 records in RAM. INFO 2026-06-04 21:21:30 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr17:64,895,953 INFO 2026-06-04 21:21:30 MarkDuplicates Tracking 273810 as yet unmatched pairs. 22732 records in RAM. INFO 2026-06-04 21:21:32 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:68,524,047 INFO 2026-06-04 21:21:32 MarkDuplicates Tracking 274478 as yet unmatched pairs. 23393 records in RAM. INFO 2026-06-04 21:21:33 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:74,768,836 INFO 2026-06-04 21:21:33 MarkDuplicates Tracking 269237 as yet unmatched pairs. 18148 records in RAM. INFO 2026-06-04 21:21:35 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,588 INFO 2026-06-04 21:21:35 MarkDuplicates Tracking 267163 as yet unmatched pairs. 16072 records in RAM. INFO 2026-06-04 21:21:36 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:77,190,879 INFO 2026-06-04 21:21:36 MarkDuplicates Tracking 264775 as yet unmatched pairs. 13683 records in RAM. INFO 2026-06-04 21:21:38 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:78,973,033 INFO 2026-06-04 21:21:38 MarkDuplicates Tracking 262015 as yet unmatched pairs. 10920 records in RAM. INFO 2026-06-04 21:21:39 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:81,053,676 INFO 2026-06-04 21:21:39 MarkDuplicates Tracking 258705 as yet unmatched pairs. 7607 records in RAM. INFO 2026-06-04 21:21:41 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:81,847,028 INFO 2026-06-04 21:21:41 MarkDuplicates Tracking 256138 as yet unmatched pairs. 5039 records in RAM. INFO 2026-06-04 21:21:42 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:82,091,256 INFO 2026-06-04 21:21:42 MarkDuplicates Tracking 253214 as yet unmatched pairs. 2115 records in RAM. INFO 2026-06-04 21:21:44 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr18:3,253,330 INFO 2026-06-04 21:21:44 MarkDuplicates Tracking 251301 as yet unmatched pairs. 14501 records in RAM. INFO 2026-06-04 21:21:46 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 2s. Last read position: chr18:12,030,342 INFO 2026-06-04 21:21:46 MarkDuplicates Tracking 247904 as yet unmatched pairs. 11094 records in RAM. INFO 2026-06-04 21:21:48 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 2s. Last read position: chr18:26,018,314 INFO 2026-06-04 21:21:48 MarkDuplicates Tracking 245706 as yet unmatched pairs. 8895 records in RAM. INFO 2026-06-04 21:21:50 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr18:45,934,809 INFO 2026-06-04 21:21:50 MarkDuplicates Tracking 243373 as yet unmatched pairs. 6561 records in RAM. INFO 2026-06-04 21:21:52 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr18:57,613,601 INFO 2026-06-04 21:21:52 MarkDuplicates Tracking 241135 as yet unmatched pairs. 4319 records in RAM. INFO 2026-06-04 21:21:53 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr18:74,263,351 INFO 2026-06-04 21:21:53 MarkDuplicates Tracking 239720 as yet unmatched pairs. 2903 records in RAM. INFO 2026-06-04 21:21:55 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr19:804,153 INFO 2026-06-04 21:21:55 MarkDuplicates Tracking 235828 as yet unmatched pairs. 98514 records in RAM. INFO 2026-06-04 21:21:56 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,388 INFO 2026-06-04 21:21:56 MarkDuplicates Tracking 232783 as yet unmatched pairs. 95466 records in RAM. INFO 2026-06-04 21:21:58 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr19:2,042,745 INFO 2026-06-04 21:21:58 MarkDuplicates Tracking 230367 as yet unmatched pairs. 93048 records in RAM. INFO 2026-06-04 21:21:59 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr19:3,449,011 INFO 2026-06-04 21:21:59 MarkDuplicates Tracking 227004 as yet unmatched pairs. 89685 records in RAM. INFO 2026-06-04 21:22:01 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr19:4,817,029 INFO 2026-06-04 21:22:01 MarkDuplicates Tracking 223857 as yet unmatched pairs. 86534 records in RAM. INFO 2026-06-04 21:22:02 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr19:6,415,412 INFO 2026-06-04 21:22:02 MarkDuplicates Tracking 221042 as yet unmatched pairs. 83715 records in RAM. INFO 2026-06-04 21:22:04 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr19:6,718,355 INFO 2026-06-04 21:22:04 MarkDuplicates Tracking 218704 as yet unmatched pairs. 81375 records in RAM. INFO 2026-06-04 21:22:05 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr19:7,963,596 INFO 2026-06-04 21:22:05 MarkDuplicates Tracking 215871 as yet unmatched pairs. 78542 records in RAM. INFO 2026-06-04 21:22:07 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,436 INFO 2026-06-04 21:22:07 MarkDuplicates Tracking 213234 as yet unmatched pairs. 75904 records in RAM. INFO 2026-06-04 21:22:08 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr19:10,987,758 INFO 2026-06-04 21:22:08 MarkDuplicates Tracking 210564 as yet unmatched pairs. 73234 records in RAM. INFO 2026-06-04 21:22:10 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,804 INFO 2026-06-04 21:22:10 MarkDuplicates Tracking 207986 as yet unmatched pairs. 70655 records in RAM. INFO 2026-06-04 21:22:12 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:13,025,158 INFO 2026-06-04 21:22:12 MarkDuplicates Tracking 206375 as yet unmatched pairs. 69044 records in RAM. INFO 2026-06-04 21:22:14 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr19:14,450,903 INFO 2026-06-04 21:22:14 MarkDuplicates Tracking 202864 as yet unmatched pairs. 65533 records in RAM. INFO 2026-06-04 21:22:15 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,291 INFO 2026-06-04 21:22:15 MarkDuplicates Tracking 200383 as yet unmatched pairs. 63052 records in RAM. INFO 2026-06-04 21:22:17 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr19:16,523,094 INFO 2026-06-04 21:22:17 MarkDuplicates Tracking 197465 as yet unmatched pairs. 60130 records in RAM. INFO 2026-06-04 21:22:18 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,940 INFO 2026-06-04 21:22:18 MarkDuplicates Tracking 196282 as yet unmatched pairs. 58942 records in RAM. INFO 2026-06-04 21:22:20 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:18,749,794 INFO 2026-06-04 21:22:20 MarkDuplicates Tracking 191801 as yet unmatched pairs. 54461 records in RAM. INFO 2026-06-04 21:22:21 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,154 INFO 2026-06-04 21:22:21 MarkDuplicates Tracking 189254 as yet unmatched pairs. 51913 records in RAM. INFO 2026-06-04 21:22:22 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:35,141,159 INFO 2026-06-04 21:22:22 MarkDuplicates Tracking 186583 as yet unmatched pairs. 49239 records in RAM. INFO 2026-06-04 21:22:24 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:36,149,675 INFO 2026-06-04 21:22:24 MarkDuplicates Tracking 183689 as yet unmatched pairs. 46344 records in RAM. INFO 2026-06-04 21:22:25 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:38,729,361 INFO 2026-06-04 21:22:25 MarkDuplicates Tracking 180817 as yet unmatched pairs. 43472 records in RAM. INFO 2026-06-04 21:22:27 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,471 INFO 2026-06-04 21:22:27 MarkDuplicates Tracking 178631 as yet unmatched pairs. 41283 records in RAM. INFO 2026-06-04 21:22:28 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:40,367,808 INFO 2026-06-04 21:22:28 MarkDuplicates Tracking 175743 as yet unmatched pairs. 38395 records in RAM. INFO 2026-06-04 21:22:30 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:40,786,867 INFO 2026-06-04 21:22:30 MarkDuplicates Tracking 172910 as yet unmatched pairs. 35561 records in RAM. INFO 2026-06-04 21:22:31 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:41,506,187 INFO 2026-06-04 21:22:31 MarkDuplicates Tracking 170368 as yet unmatched pairs. 33018 records in RAM. INFO 2026-06-04 21:22:32 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,037 INFO 2026-06-04 21:22:32 MarkDuplicates Tracking 167800 as yet unmatched pairs. 30450 records in RAM. INFO 2026-06-04 21:22:33 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:43,774,293 INFO 2026-06-04 21:22:33 MarkDuplicates Tracking 165001 as yet unmatched pairs. 27648 records in RAM. INFO 2026-06-04 21:22:35 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:45,472,833 INFO 2026-06-04 21:22:35 MarkDuplicates Tracking 163085 as yet unmatched pairs. 25726 records in RAM. INFO 2026-06-04 21:22:37 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr19:46,921,012 INFO 2026-06-04 21:22:37 MarkDuplicates Tracking 159614 as yet unmatched pairs. 22255 records in RAM. INFO 2026-06-04 21:22:39 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:48,485,767 INFO 2026-06-04 21:22:39 MarkDuplicates Tracking 156773 as yet unmatched pairs. 19414 records in RAM. INFO 2026-06-04 21:22:40 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:49,336,988 INFO 2026-06-04 21:22:40 MarkDuplicates Tracking 154462 as yet unmatched pairs. 17102 records in RAM. INFO 2026-06-04 21:22:42 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:49,670,409 INFO 2026-06-04 21:22:42 MarkDuplicates Tracking 151571 as yet unmatched pairs. 14211 records in RAM. INFO 2026-06-04 21:22:43 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:50,359,857 INFO 2026-06-04 21:22:43 MarkDuplicates Tracking 151923 as yet unmatched pairs. 14563 records in RAM. INFO 2026-06-04 21:22:45 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:52,907,856 INFO 2026-06-04 21:22:45 MarkDuplicates Tracking 146261 as yet unmatched pairs. 8901 records in RAM. INFO 2026-06-04 21:22:46 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,637 INFO 2026-06-04 21:22:46 MarkDuplicates Tracking 144400 as yet unmatched pairs. 7039 records in RAM. INFO 2026-06-04 21:22:47 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:55,613,840 INFO 2026-06-04 21:22:47 MarkDuplicates Tracking 141104 as yet unmatched pairs. 3741 records in RAM. INFO 2026-06-04 21:22:49 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:58,090,163 INFO 2026-06-04 21:22:49 MarkDuplicates Tracking 139236 as yet unmatched pairs. 1872 records in RAM. INFO 2026-06-04 21:22:50 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr20:2,660,913 INFO 2026-06-04 21:22:50 MarkDuplicates Tracking 136167 as yet unmatched pairs. 30775 records in RAM. INFO 2026-06-04 21:22:52 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr20:8,757,047 INFO 2026-06-04 21:22:52 MarkDuplicates Tracking 133395 as yet unmatched pairs. 28002 records in RAM. INFO 2026-06-04 21:22:53 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr20:18,315,292 INFO 2026-06-04 21:22:53 MarkDuplicates Tracking 131200 as yet unmatched pairs. 25806 records in RAM. INFO 2026-06-04 21:22:54 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr20:25,458,442 INFO 2026-06-04 21:22:54 MarkDuplicates Tracking 128505 as yet unmatched pairs. 23110 records in RAM. INFO 2026-06-04 21:22:56 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr20:34,709,237 INFO 2026-06-04 21:22:56 MarkDuplicates Tracking 125910 as yet unmatched pairs. 20513 records in RAM. INFO 2026-06-04 21:22:57 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,420 INFO 2026-06-04 21:22:57 MarkDuplicates Tracking 123484 as yet unmatched pairs. 18086 records in RAM. INFO 2026-06-04 21:22:59 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr20:41,084,549 INFO 2026-06-04 21:22:59 MarkDuplicates Tracking 121220 as yet unmatched pairs. 15821 records in RAM. INFO 2026-06-04 21:23:00 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,316 INFO 2026-06-04 21:23:00 MarkDuplicates Tracking 123105 as yet unmatched pairs. 17706 records in RAM. INFO 2026-06-04 21:23:02 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr20:47,236,440 INFO 2026-06-04 21:23:02 MarkDuplicates Tracking 116197 as yet unmatched pairs. 10796 records in RAM. INFO 2026-06-04 21:23:04 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr20:50,894,358 INFO 2026-06-04 21:23:04 MarkDuplicates Tracking 113917 as yet unmatched pairs. 8515 records in RAM. INFO 2026-06-04 21:23:05 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,682 INFO 2026-06-04 21:23:05 MarkDuplicates Tracking 112533 as yet unmatched pairs. 7130 records in RAM. INFO 2026-06-04 21:23:07 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr20:62,879,364 INFO 2026-06-04 21:23:07 MarkDuplicates Tracking 108166 as yet unmatched pairs. 2761 records in RAM. INFO 2026-06-04 21:23:08 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr21:5,037,039 INFO 2026-06-04 21:23:08 MarkDuplicates Tracking 105289 as yet unmatched pairs. 16938 records in RAM. INFO 2026-06-04 21:23:09 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,961 INFO 2026-06-04 21:23:09 MarkDuplicates Tracking 103984 as yet unmatched pairs. 15630 records in RAM. INFO 2026-06-04 21:23:10 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,409 INFO 2026-06-04 21:23:10 MarkDuplicates Tracking 103145 as yet unmatched pairs. 14789 records in RAM. INFO 2026-06-04 21:23:11 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 0s. Last read position: chr21:15,877,984 INFO 2026-06-04 21:23:11 MarkDuplicates Tracking 102091 as yet unmatched pairs. 13734 records in RAM. INFO 2026-06-04 21:23:13 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr21:32,745,618 INFO 2026-06-04 21:23:13 MarkDuplicates Tracking 99554 as yet unmatched pairs. 11197 records in RAM. INFO 2026-06-04 21:23:14 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr21:37,156,805 INFO 2026-06-04 21:23:14 MarkDuplicates Tracking 97447 as yet unmatched pairs. 9088 records in RAM. INFO 2026-06-04 21:23:16 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr21:41,508,104 INFO 2026-06-04 21:23:16 MarkDuplicates Tracking 94659 as yet unmatched pairs. 6298 records in RAM. INFO 2026-06-04 21:23:17 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr21:44,890,183 INFO 2026-06-04 21:23:17 MarkDuplicates Tracking 92547 as yet unmatched pairs. 4186 records in RAM. INFO 2026-06-04 21:23:18 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr21:46,126,056 INFO 2026-06-04 21:23:18 MarkDuplicates Tracking 90035 as yet unmatched pairs. 1671 records in RAM. INFO 2026-06-04 21:23:20 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr22:18,922,368 INFO 2026-06-04 21:23:20 MarkDuplicates Tracking 87613 as yet unmatched pairs. 41838 records in RAM. INFO 2026-06-04 21:23:21 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr22:20,742,737 INFO 2026-06-04 21:23:21 MarkDuplicates Tracking 84232 as yet unmatched pairs. 38457 records in RAM. INFO 2026-06-04 21:23:23 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr22:23,290,362 INFO 2026-06-04 21:23:23 MarkDuplicates Tracking 82079 as yet unmatched pairs. 36304 records in RAM. INFO 2026-06-04 21:23:24 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr22:24,187,676 INFO 2026-06-04 21:23:24 MarkDuplicates Tracking 79260 as yet unmatched pairs. 33485 records in RAM. INFO 2026-06-04 21:23:26 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,715 INFO 2026-06-04 21:23:26 MarkDuplicates Tracking 77851 as yet unmatched pairs. 32076 records in RAM. INFO 2026-06-04 21:23:27 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr22:29,549,054 INFO 2026-06-04 21:23:27 MarkDuplicates Tracking 74256 as yet unmatched pairs. 28481 records in RAM. INFO 2026-06-04 21:23:29 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr22:31,685,548 INFO 2026-06-04 21:23:29 MarkDuplicates Tracking 71691 as yet unmatched pairs. 25916 records in RAM. INFO 2026-06-04 21:23:31 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr22:36,288,284 INFO 2026-06-04 21:23:31 MarkDuplicates Tracking 69228 as yet unmatched pairs. 23453 records in RAM. INFO 2026-06-04 21:23:32 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,700 INFO 2026-06-04 21:23:32 MarkDuplicates Tracking 66579 as yet unmatched pairs. 20803 records in RAM. INFO 2026-06-04 21:23:33 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr22:38,303,270 INFO 2026-06-04 21:23:33 MarkDuplicates Tracking 63873 as yet unmatched pairs. 18097 records in RAM. INFO 2026-06-04 21:23:35 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr22:39,522,118 INFO 2026-06-04 21:23:35 MarkDuplicates Tracking 61837 as yet unmatched pairs. 16061 records in RAM. INFO 2026-06-04 21:23:36 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr22:41,339,815 INFO 2026-06-04 21:23:36 MarkDuplicates Tracking 58993 as yet unmatched pairs. 13217 records in RAM. INFO 2026-06-04 21:23:38 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr22:42,215,181 INFO 2026-06-04 21:23:38 MarkDuplicates Tracking 56243 as yet unmatched pairs. 10467 records in RAM. INFO 2026-06-04 21:23:39 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr22:45,702,730 INFO 2026-06-04 21:23:39 MarkDuplicates Tracking 53645 as yet unmatched pairs. 7869 records in RAM. INFO 2026-06-04 21:23:40 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr22:50,220,635 INFO 2026-06-04 21:23:40 MarkDuplicates Tracking 50968 as yet unmatched pairs. 5192 records in RAM. INFO 2026-06-04 21:23:42 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr22:50,526,453 INFO 2026-06-04 21:23:42 MarkDuplicates Tracking 47363 as yet unmatched pairs. 1587 records in RAM. INFO 2026-06-04 21:23:44 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chrX:3,311,535 INFO 2026-06-04 21:23:44 MarkDuplicates Tracking 44398 as yet unmatched pairs. 39430 records in RAM. INFO 2026-06-04 21:23:45 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chrX:16,849,258 INFO 2026-06-04 21:23:45 MarkDuplicates Tracking 42164 as yet unmatched pairs. 37196 records in RAM. INFO 2026-06-04 21:23:46 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chrX:31,121,807 INFO 2026-06-04 21:23:46 MarkDuplicates Tracking 39781 as yet unmatched pairs. 34796 records in RAM. INFO 2026-06-04 21:23:48 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chrX:41,578,431 INFO 2026-06-04 21:23:48 MarkDuplicates Tracking 37423 as yet unmatched pairs. 32438 records in RAM. INFO 2026-06-04 21:23:49 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chrX:47,583,441 INFO 2026-06-04 21:23:49 MarkDuplicates Tracking 35349 as yet unmatched pairs. 30364 records in RAM. INFO 2026-06-04 21:23:51 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chrX:49,174,674 INFO 2026-06-04 21:23:51 MarkDuplicates Tracking 32471 as yet unmatched pairs. 27486 records in RAM. INFO 2026-06-04 21:23:52 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chrX:53,554,890 INFO 2026-06-04 21:23:52 MarkDuplicates Tracking 30267 as yet unmatched pairs. 25282 records in RAM. INFO 2026-06-04 21:23:54 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,024 INFO 2026-06-04 21:23:54 MarkDuplicates Tracking 28067 as yet unmatched pairs. 23082 records in RAM. INFO 2026-06-04 21:23:56 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chrX:71,556,951 INFO 2026-06-04 21:23:56 MarkDuplicates Tracking 25722 as yet unmatched pairs. 20737 records in RAM. INFO 2026-06-04 21:23:57 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chrX:77,696,688 INFO 2026-06-04 21:23:57 MarkDuplicates Tracking 23623 as yet unmatched pairs. 18638 records in RAM. INFO 2026-06-04 21:23:58 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chrX:103,587,021 INFO 2026-06-04 21:23:58 MarkDuplicates Tracking 21319 as yet unmatched pairs. 16334 records in RAM. INFO 2026-06-04 21:24:00 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chrX:118,573,871 INFO 2026-06-04 21:24:00 MarkDuplicates Tracking 18827 as yet unmatched pairs. 13842 records in RAM. INFO 2026-06-04 21:24:01 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chrX:130,014,030 INFO 2026-06-04 21:24:01 MarkDuplicates Tracking 16476 as yet unmatched pairs. 11491 records in RAM. INFO 2026-06-04 21:24:03 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chrX:150,470,335 INFO 2026-06-04 21:24:03 MarkDuplicates Tracking 14102 as yet unmatched pairs. 9116 records in RAM. INFO 2026-06-04 21:24:04 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,019,430 INFO 2026-06-04 21:24:04 MarkDuplicates Tracking 11825 as yet unmatched pairs. 6839 records in RAM. INFO 2026-06-04 21:24:05 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,520 INFO 2026-06-04 21:24:05 MarkDuplicates Tracking 10384 as yet unmatched pairs. 5398 records in RAM. INFO 2026-06-04 21:24:07 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chrX:154,441,172 INFO 2026-06-04 21:24:07 MarkDuplicates Tracking 6526 as yet unmatched pairs. 1540 records in RAM. INFO 2026-06-04 21:24:08 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,199 INFO 2026-06-04 21:24:08 MarkDuplicates Tracking 4609 as yet unmatched pairs. 1818 records in RAM. INFO 2026-06-04 21:24:09 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,528 INFO 2026-06-04 21:24:09 MarkDuplicates Tracking 2795 as yet unmatched pairs. 4 records in RAM. INFO 2026-06-04 21:24:10 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,598 INFO 2026-06-04 21:24:10 MarkDuplicates Tracking 741 as yet unmatched pairs. 511 records in RAM. INFO 2026-06-04 21:24:11 MarkDuplicates Read 631997652 records. 0 pairs never matched. INFO 2026-06-04 21:24:54 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141904; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:24:54 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-04 21:24:57 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-04 21:24:57 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1482 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,419 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1708 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,649 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,799 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,352 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1159 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,125 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1075 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,414 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,379 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1275 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,962 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder Large duplicate set. size = 1737 INFO 2026-06-04 21:25:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,122 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder Large duplicate set. size = 1871 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,875 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,465 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder Large duplicate set. size = 1141 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,264 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-04 21:25:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,290 INFO 2026-06-04 21:25:10 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-04 21:25:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,297 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder Large duplicate set. size = 1435 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,028 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,233 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder Large duplicate set. size = 1125 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,898 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,872 INFO 2026-06-04 21:25:14 OpticalDuplicateFinder Large duplicate set. size = 2132 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,898 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,632 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,833 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1632 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,414 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 2157 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,562 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,051 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1152 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,884 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1470 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,590 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,490 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,406 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,005 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1539 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,589 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1090 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,155 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder Large duplicate set. size = 1210 INFO 2026-06-04 21:25:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,638 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1503 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,179 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,579 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,859 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1907 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,528 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1555 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1729 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,850 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1292 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,035 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1310 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,571 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1306 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,356 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 2049 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,087 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,590 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,700 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,375 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,957 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,105 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1424 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,396 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1549 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,346 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1521 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,058 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,186 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1135 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,703 INFO 2026-06-04 21:25:19 OpticalDuplicateFinder Large duplicate set. size = 1134 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,448 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 3203 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,147 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,385 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,644 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1938 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,858 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 3420 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,606 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,702 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,352 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1396 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,803 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1631 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,017 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,093 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1390 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,903 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1505 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,407 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1602 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,584 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1814 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,539 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,305 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1556 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,489 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,507 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1264 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,960 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1567 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,986 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 2481 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,849 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,845 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1251 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,713 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,741 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1217 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,859 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1473 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,258 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,396 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1372 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,043 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1310 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,786 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,137 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,770 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1163 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1266 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,226 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1170 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,408 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,832 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1083 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,467 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,900 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,055 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,079 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1302 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,094 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,772 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,906 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1152 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,454 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,111 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 2451 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,727 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,218 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 2725 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,483 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,300 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1476 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,149 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 2904 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,792 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,631 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,229 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1085 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,413 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1137 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,868 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1239 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1520 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,356 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1052 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,428 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1352 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,878 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 2251 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,693 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,644 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 2613 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,608 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,762 INFO 2026-06-04 21:25:20 OpticalDuplicateFinder Large duplicate set. size = 1755 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,074 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,302 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 3464 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,481 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,260 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,273 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,203 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1226 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,390 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1477 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,722 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,099 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1940 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,400 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 3145 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,679 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,741 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,718 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 3393 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,149 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,204 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 2464 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,922 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,378 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1331 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,314 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1489 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,287 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 5031 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,831 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,477 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,363 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,473 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,706 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,048 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1616 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,464 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 3920 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,780 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,566 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1451 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,455 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1720 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,344 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 2057 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,354 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,031 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1436 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1256 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,443 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,181 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1296 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,202 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1160 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,050 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,645 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1761 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1414 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,059 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1410 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,970 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1409 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1196 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,352 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,611 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,223 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1361 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,247 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,405 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,560 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1963 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,486 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1378 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,059 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1813 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,649 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1391 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,362 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1272 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,547 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1304 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,950 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1196 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,874 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1582 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,426 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1341 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,912 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,175 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder Large duplicate set. size = 1349 INFO 2026-06-04 21:25:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,574 INFO 2026-06-04 21:25:23 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-04 21:25:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,173 INFO 2026-06-04 21:25:27 OpticalDuplicateFinder Large duplicate set. size = 1200 INFO 2026-06-04 21:25:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,815 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1241 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,353 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1519 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,406 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1644 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,918 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1648 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,115 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1469 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,484 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1401 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,969 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,591 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 3178 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,509 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,510 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1686 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,665 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1098 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,093 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1501 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,813 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1704 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,241 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,858 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1272 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,340 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1678 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,830 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,056 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,890 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1693 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,909 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,460 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 3524 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,238 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,834 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,307 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 2214 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,489 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,878 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,916 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1797 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,526 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1501 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,629 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,851 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 2816 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,988 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,089 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1724 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,731 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,209 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1439 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,606 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1002 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,518 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1606 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,111 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,299 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-04 21:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,334 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder Large duplicate set. size = 1371 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,914 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder Large duplicate set. size = 1379 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,977 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,193 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder Large duplicate set. size = 2098 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,134 INFO 2026-06-04 21:25:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,706 INFO 2026-06-04 21:26:22 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-04 21:26:22 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-04 21:27:24 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-04 21:27:27 MarkDuplicates After generateDuplicateIndexes freeMemory: 203878008; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:27:27 MarkDuplicates Marking 330696113 records as duplicates. INFO 2026-06-04 21:27:27 MarkDuplicates Found 9148749 optical duplicate clusters. INFO 2026-06-04 21:27:28 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-04 21:27:44 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:23,692,690 INFO 2026-06-04 21:28:00 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:45,660,291 INFO 2026-06-04 21:28:17 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:116,404,459 INFO 2026-06-04 21:28:33 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:154,237,056 INFO 2026-06-04 21:28:49 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:171,584,424 INFO 2026-06-04 21:29:06 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr1:212,791,948 INFO 2026-06-04 21:29:24 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 17s. Last read position: chr2:30,234,404 INFO 2026-06-04 21:29:40 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:12s. Time for last 10,000,000: 16s. Last read position: chr2:59,188,199 INFO 2026-06-04 21:29:57 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 16s. Last read position: chr2:108,487,720 INFO 2026-06-04 21:30:15 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 18s. Last read position: chr2:189,057,388 INFO 2026-06-04 21:30:33 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 18s. Last read position: chr2:215,410,000 INFO 2026-06-04 21:30:50 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 17s. Last read position: chr3:9,930,450 INFO 2026-06-04 21:31:07 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 16s. Last read position: chr3:51,994,913 INFO 2026-06-04 21:31:24 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 16s. Last read position: chr3:132,675,361 INFO 2026-06-04 21:31:41 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 16s. Last read position: chr4:2,932,747 INFO 2026-06-04 21:31:57 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 16s. Last read position: chr4:76,739,267 INFO 2026-06-04 21:32:14 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 16s. Last read position: chr4:183,261,088 INFO 2026-06-04 21:32:31 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:03s. Time for last 10,000,000: 16s. Last read position: chr5:73,503,107 INFO 2026-06-04 21:32:47 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 16s. Last read position: chr5:142,314,674 INFO 2026-06-04 21:33:03 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 16s. Last read position: chr5:150,650,060 INFO 2026-06-04 21:33:20 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 16s. Last read position: chr6:3,850,179 INFO 2026-06-04 21:33:36 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 16s. Last read position: chr6:32,073,914 INFO 2026-06-04 21:33:52 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 16s. Last read position: chr6:51,748,342 INFO 2026-06-04 21:34:09 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 16s. Last read position: chr6:149,793,556 INFO 2026-06-04 21:34:25 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 16s. Last read position: chr7:32,988,562 INFO 2026-06-04 21:34:42 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 16s. Last read position: chr7:95,111,300 INFO 2026-06-04 21:34:58 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:30s. Time for last 10,000,000: 16s. Last read position: chr7:142,772,157 INFO 2026-06-04 21:35:14 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 16s. Last read position: chr8:27,921,609 INFO 2026-06-04 21:35:31 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:03s. Time for last 10,000,000: 16s. Last read position: chr8:119,583,784 INFO 2026-06-04 21:35:47 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:19s. Time for last 10,000,000: 16s. Last read position: chr9:35,397,209 INFO 2026-06-04 21:36:03 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 16s. Last read position: chr9:125,239,288 INFO 2026-06-04 21:36:20 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 16s. Last read position: chr10:17,236,302 INFO 2026-06-04 21:36:36 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 16s. Last read position: chr10:79,612,337 INFO 2026-06-04 21:36:52 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 16s. Last read position: chr11:397,137 INFO 2026-06-04 21:37:08 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 16s. Last read position: chr11:57,600,206 INFO 2026-06-04 21:37:24 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 16s. Last read position: chr11:67,421,067 INFO 2026-06-04 21:37:40 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr11:118,628,065 INFO 2026-06-04 21:37:57 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 16s. Last read position: chr12:9,109,373 INFO 2026-06-04 21:38:13 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 16s. Last read position: chr12:54,374,120 INFO 2026-06-04 21:38:29 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 16s. Last read position: chr12:104,031,117 INFO 2026-06-04 21:38:45 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 16s. Last read position: chr13:41,458,403 INFO 2026-06-04 21:39:01 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 16s. Last read position: chr14:24,160,380 INFO 2026-06-04 21:39:18 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 16s. Last read position: chr14:89,162,532 INFO 2026-06-04 21:39:34 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 16s. Last read position: chr15:38,498,657 INFO 2026-06-04 21:39:50 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 16s. Last read position: chr15:69,384,823 INFO 2026-06-04 21:40:06 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 16s. Last read position: chr16:510,681 INFO 2026-06-04 21:40:22 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 16s. Last read position: chr16:15,704,111 INFO 2026-06-04 21:40:38 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 16s. Last read position: chr16:30,397,456 INFO 2026-06-04 21:40:54 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 16s. Last read position: chr16:75,568,060 INFO 2026-06-04 21:41:11 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr17:8,232,040 INFO 2026-06-04 21:41:27 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:59s. Time for last 10,000,000: 16s. Last read position: chr17:40,453,121 INFO 2026-06-04 21:41:43 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 16s. Last read position: chr17:59,648,384 INFO 2026-06-04 21:42:00 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 17s. Last read position: chr17:81,847,028 INFO 2026-06-04 21:42:17 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 17s. Last read position: chr19:2,042,745 INFO 2026-06-04 21:42:35 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:07s. Time for last 10,000,000: 17s. Last read position: chr19:14,450,903 INFO 2026-06-04 21:42:53 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 18s. Last read position: chr19:40,367,808 INFO 2026-06-04 21:43:11 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:43s. Time for last 10,000,000: 18s. Last read position: chr19:50,359,857 INFO 2026-06-04 21:43:30 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:02s. Time for last 10,000,000: 18s. Last read position: chr20:36,500,420 INFO 2026-06-04 21:43:47 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 17s. Last read position: chr21:15,877,984 INFO 2026-06-04 21:44:06 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:38s. Time for last 10,000,000: 18s. Last read position: chr22:28,795,715 INFO 2026-06-04 21:44:24 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:56s. Time for last 10,000,000: 18s. Last read position: chr22:50,220,635 INFO 2026-06-04 21:44:42 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:14s. Time for last 10,000,000: 17s. Last read position: chrX:71,556,951 INFO 2026-06-04 21:44:59 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:31s. Time for last 10,000,000: 16s. Last read position: GL000220.1:159,528 INFO 2026-06-04 21:45:10 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-04 21:45:10 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-04 21:45:10 MarkDuplicates Getting Memory Stats. INFO 2026-06-04 21:45:10 MarkDuplicates Before output close freeMemory: 203870520; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-04 21:45:10 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-04 21:45:10 MarkDuplicates After output close freeMemory: 104093760; totalMemory: 134217728; maxMemory: 63585648640 [Thu Jun 04 21:45:10 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.42 minutes. Runtime.totalMemory()=134217728 Tool returned: 0 ls: *cram: No such file or directory ls: *.crai: No such file or directory