Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0dc63eebafb9a62ffc00f421b7a5d0/659_cuO-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/67220e05f57f28804e8a183e56820d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/67220e05f57f28804e8a183e56820d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory