Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/aa6a402e18f6e76a674b528312a4f7/659_cAd-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/d3d5c84deca3b1cbb83fb36c0b61bf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/d3d5c84deca3b1cbb83fb36c0b61bf/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory