Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/748e01c4ac8b7fa138740252aa71ae/659_Fr-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3f8c4bab742c6fbac50359f1517e3e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/3f8c4bab742c6fbac50359f1517e3e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory