Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bR4-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bR4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
21:09:46.411 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Thu Jun 04 21:09:46 GMT 2026] MarkDuplicates --INPUT 659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bR4-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bR4-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu Jun 04 21:09:46 GMT 2026] Executing as ?@nf-74d254f3b61aa5406dab68e9add3fbc5-2ef8a-m2s87 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-04 21:09:46 MarkDuplicates Start of doWork freeMemory: 105828144; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-04 21:09:46 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-04 21:09:46 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-04 21:09:49 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,486,224
INFO 2026-06-04 21:09:49 MarkDuplicates Tracking 3081 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-04 21:09:51 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:3,694,433
INFO 2026-06-04 21:09:51 MarkDuplicates Tracking 5720 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-04 21:09:53 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:7,827,182
INFO 2026-06-04 21:09:53 MarkDuplicates Tracking 9404 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-04 21:09:55 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:10,106,400
INFO 2026-06-04 21:09:55 MarkDuplicates Tracking 11458 as yet unmatched pairs. 313 records in RAM.
INFO 2026-06-04 21:09:57 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:11,966,294
INFO 2026-06-04 21:09:57 MarkDuplicates Tracking 14012 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-04 21:09:59 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,934,195
INFO 2026-06-04 21:09:59 MarkDuplicates Tracking 17198 as yet unmatched pairs. 933 records in RAM.
INFO 2026-06-04 21:10:01 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:19,076,842
INFO 2026-06-04 21:10:01 MarkDuplicates Tracking 19134 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-04 21:10:03 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:20,851,443
INFO 2026-06-04 21:10:03 MarkDuplicates Tracking 21618 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-04 21:10:04 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:22,638,833
INFO 2026-06-04 21:10:04 MarkDuplicates Tracking 27359 as yet unmatched pairs. 3267 records in RAM.
INFO 2026-06-04 21:10:06 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:23,695,826
INFO 2026-06-04 21:10:06 MarkDuplicates Tracking 27086 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-04 21:10:08 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:25,903,657
INFO 2026-06-04 21:10:08 MarkDuplicates Tracking 32816 as yet unmatched pairs. 3749 records in RAM.
INFO 2026-06-04 21:10:09 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:26,897,380
INFO 2026-06-04 21:10:09 MarkDuplicates Tracking 31744 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-04 21:10:11 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:28,743,651
INFO 2026-06-04 21:10:11 MarkDuplicates Tracking 35076 as yet unmatched pairs. 846 records in RAM.
INFO 2026-06-04 21:10:12 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:32,222,576
INFO 2026-06-04 21:10:12 MarkDuplicates Tracking 37283 as yet unmatched pairs. 489 records in RAM.
INFO 2026-06-04 21:10:14 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:35,187,236
INFO 2026-06-04 21:10:15 MarkDuplicates Tracking 39825 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-04 21:10:16 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:36,289,553
INFO 2026-06-04 21:10:16 MarkDuplicates Tracking 42584 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-04 21:10:19 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:39,385,797
INFO 2026-06-04 21:10:19 MarkDuplicates Tracking 45967 as yet unmatched pairs. 1260 records in RAM.
INFO 2026-06-04 21:10:20 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:41,381,614
INFO 2026-06-04 21:10:20 MarkDuplicates Tracking 47603 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-04 21:10:22 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:43,620,170
INFO 2026-06-04 21:10:22 MarkDuplicates Tracking 50414 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-04 21:10:24 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:46,008,294
INFO 2026-06-04 21:10:24 MarkDuplicates Tracking 52831 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-04 21:10:26 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:51,789,419
INFO 2026-06-04 21:10:26 MarkDuplicates Tracking 55656 as yet unmatched pairs. 418 records in RAM.
INFO 2026-06-04 21:10:27 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:58,539,162
INFO 2026-06-04 21:10:27 MarkDuplicates Tracking 57968 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-04 21:10:29 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:70,276,798
INFO 2026-06-04 21:10:29 MarkDuplicates Tracking 60384 as yet unmatched pairs. 236 records in RAM.
INFO 2026-06-04 21:10:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:89,020,532
INFO 2026-06-04 21:10:30 MarkDuplicates Tracking 62765 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-04 21:10:32 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:100,218,677
INFO 2026-06-04 21:10:32 MarkDuplicates Tracking 64969 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-04 21:10:33 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:110,047,568
INFO 2026-06-04 21:10:33 MarkDuplicates Tracking 67465 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-04 21:10:35 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:113,683,781
INFO 2026-06-04 21:10:35 MarkDuplicates Tracking 70111 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-04 21:10:36 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:117,368,469
INFO 2026-06-04 21:10:36 MarkDuplicates Tracking 72708 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-04 21:10:37 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:121,116,973
INFO 2026-06-04 21:10:37 MarkDuplicates Tracking 74473 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-04 21:10:39 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:145,995,948
INFO 2026-06-04 21:10:39 MarkDuplicates Tracking 78564 as yet unmatched pairs. 2545 records in RAM.
INFO 2026-06-04 21:10:41 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:148,126,858
INFO 2026-06-04 21:10:41 MarkDuplicates Tracking 77842 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-04 21:10:42 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:149,812,243
INFO 2026-06-04 21:10:42 MarkDuplicates Tracking 78537 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-04 21:10:44 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,298
INFO 2026-06-04 21:10:44 MarkDuplicates Tracking 81631 as yet unmatched pairs. 930 records in RAM.
INFO 2026-06-04 21:10:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,900,245
INFO 2026-06-04 21:10:45 MarkDuplicates Tracking 82111 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-04 21:10:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,627,515
INFO 2026-06-04 21:10:47 MarkDuplicates Tracking 85708 as yet unmatched pairs. 1339 records in RAM.
INFO 2026-06-04 21:10:48 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:151,405,505
INFO 2026-06-04 21:10:48 MarkDuplicates Tracking 87937 as yet unmatched pairs. 1032 records in RAM.
INFO 2026-06-04 21:10:50 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:153,140,574
INFO 2026-06-04 21:10:50 MarkDuplicates Tracking 89073 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-04 21:10:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,631
INFO 2026-06-04 21:10:52 MarkDuplicates Tracking 97271 as yet unmatched pairs. 5632 records in RAM.
INFO 2026-06-04 21:10:53 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,585,291
INFO 2026-06-04 21:10:53 MarkDuplicates Tracking 95009 as yet unmatched pairs. 1078 records in RAM.
INFO 2026-06-04 21:10:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,195,883
INFO 2026-06-04 21:10:55 MarkDuplicates Tracking 96557 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-04 21:10:56 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,721,536
INFO 2026-06-04 21:10:56 MarkDuplicates Tracking 99557 as yet unmatched pairs. 905 records in RAM.
INFO 2026-06-04 21:10:58 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,986
INFO 2026-06-04 21:10:58 MarkDuplicates Tracking 102483 as yet unmatched pairs. 1252 records in RAM.
INFO 2026-06-04 21:11:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:156,732,455
INFO 2026-06-04 21:11:00 MarkDuplicates Tracking 104159 as yet unmatched pairs. 441 records in RAM.
INFO 2026-06-04 21:11:01 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:159,928,676
INFO 2026-06-04 21:11:01 MarkDuplicates Tracking 106685 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-04 21:11:03 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,052,631
INFO 2026-06-04 21:11:03 MarkDuplicates Tracking 109276 as yet unmatched pairs. 543 records in RAM.
INFO 2026-06-04 21:11:04 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:167,374,239
INFO 2026-06-04 21:11:04 MarkDuplicates Tracking 111365 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-04 21:11:06 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:171,541,708
INFO 2026-06-04 21:11:06 MarkDuplicates Tracking 114547 as yet unmatched pairs. 911 records in RAM.
INFO 2026-06-04 21:11:07 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:176,206,928
INFO 2026-06-04 21:11:07 MarkDuplicates Tracking 116272 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-04 21:11:09 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:182,818,618
INFO 2026-06-04 21:11:09 MarkDuplicates Tracking 118909 as yet unmatched pairs. 246 records in RAM.
INFO 2026-06-04 21:11:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:186,322,387
INFO 2026-06-04 21:11:10 MarkDuplicates Tracking 123732 as yet unmatched pairs. 2714 records in RAM.
INFO 2026-06-04 21:11:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:186,374,909
INFO 2026-06-04 21:11:12 MarkDuplicates Tracking 125172 as yet unmatched pairs. 2109 records in RAM.
INFO 2026-06-04 21:11:13 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:200,981,010
INFO 2026-06-04 21:11:13 MarkDuplicates Tracking 125615 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-04 21:11:15 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:203,305,579
INFO 2026-06-04 21:11:15 MarkDuplicates Tracking 129769 as yet unmatched pairs. 1904 records in RAM.
INFO 2026-06-04 21:11:16 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:205,163,887
INFO 2026-06-04 21:11:16 MarkDuplicates Tracking 130337 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-04 21:11:17 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:207,533,554
INFO 2026-06-04 21:11:17 MarkDuplicates Tracking 132749 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-04 21:11:19 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:213,997,286
INFO 2026-06-04 21:11:19 MarkDuplicates Tracking 135155 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-04 21:11:21 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:222,629,801
INFO 2026-06-04 21:11:21 MarkDuplicates Tracking 137270 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-04 21:11:22 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:225,920,381
INFO 2026-06-04 21:11:22 MarkDuplicates Tracking 139718 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-04 21:11:24 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:228,146,840
INFO 2026-06-04 21:11:24 MarkDuplicates Tracking 143059 as yet unmatched pairs. 1114 records in RAM.
INFO 2026-06-04 21:11:25 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:231,335,560
INFO 2026-06-04 21:11:25 MarkDuplicates Tracking 144981 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-04 21:11:27 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:235,550,733
INFO 2026-06-04 21:11:27 MarkDuplicates Tracking 147959 as yet unmatched pairs. 260 records in RAM.
INFO 2026-06-04 21:11:28 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:243,165,117
INFO 2026-06-04 21:11:28 MarkDuplicates Tracking 150585 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-04 21:11:30 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:245,155,410
INFO 2026-06-04 21:11:30 MarkDuplicates Tracking 152880 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-04 21:11:32 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr2:3,575,815
INFO 2026-06-04 21:11:32 MarkDuplicates Tracking 157930 as yet unmatched pairs. 154932 records in RAM.
INFO 2026-06-04 21:11:34 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:10,787,343
INFO 2026-06-04 21:11:34 MarkDuplicates Tracking 158545 as yet unmatched pairs. 155486 records in RAM.
INFO 2026-06-04 21:11:36 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:20,205,365
INFO 2026-06-04 21:11:36 MarkDuplicates Tracking 161504 as yet unmatched pairs. 158399 records in RAM.
INFO 2026-06-04 21:11:37 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:25,767,665
INFO 2026-06-04 21:11:37 MarkDuplicates Tracking 163436 as yet unmatched pairs. 160263 records in RAM.
INFO 2026-06-04 21:11:39 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:27,385,028
INFO 2026-06-04 21:11:39 MarkDuplicates Tracking 166186 as yet unmatched pairs. 162948 records in RAM.
INFO 2026-06-04 21:11:41 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,468,466
INFO 2026-06-04 21:11:41 MarkDuplicates Tracking 168710 as yet unmatched pairs. 165410 records in RAM.
INFO 2026-06-04 21:11:42 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:11:42 MarkDuplicates Tracking 425430 as yet unmatched pairs. 146986 records in RAM.
INFO 2026-06-04 21:11:45 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:11:45 MarkDuplicates Tracking 1093089 as yet unmatched pairs. 98336 records in RAM.
INFO 2026-06-04 21:11:47 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-04 21:11:47 MarkDuplicates Tracking 1307153 as yet unmatched pairs. 82760 records in RAM.
INFO 2026-06-04 21:11:48 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,408
INFO 2026-06-04 21:11:48 MarkDuplicates Tracking 1323173 as yet unmatched pairs. 81826 records in RAM.
INFO 2026-06-04 21:11:50 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:38,750,167
INFO 2026-06-04 21:11:50 MarkDuplicates Tracking 1370471 as yet unmatched pairs. 76358 records in RAM.
INFO 2026-06-04 21:11:51 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:43,574,779
INFO 2026-06-04 21:11:51 MarkDuplicates Tracking 1368582 as yet unmatched pairs. 74432 records in RAM.
INFO 2026-06-04 21:11:53 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:47,799,149
INFO 2026-06-04 21:11:53 MarkDuplicates Tracking 1366957 as yet unmatched pairs. 72757 records in RAM.
INFO 2026-06-04 21:11:54 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,980
INFO 2026-06-04 21:11:54 MarkDuplicates Tracking 1363387 as yet unmatched pairs. 69119 records in RAM.
INFO 2026-06-04 21:11:56 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:58,048,856
INFO 2026-06-04 21:11:56 MarkDuplicates Tracking 1361022 as yet unmatched pairs. 66704 records in RAM.
INFO 2026-06-04 21:11:58 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:62,955,544
INFO 2026-06-04 21:11:58 MarkDuplicates Tracking 1358462 as yet unmatched pairs. 64091 records in RAM.
INFO 2026-06-04 21:11:59 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:70,212,627
INFO 2026-06-04 21:11:59 MarkDuplicates Tracking 1356465 as yet unmatched pairs. 62038 records in RAM.
INFO 2026-06-04 21:12:01 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:74,047,053
INFO 2026-06-04 21:12:01 MarkDuplicates Tracking 1353805 as yet unmatched pairs. 59337 records in RAM.
INFO 2026-06-04 21:12:02 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:85,327,325
INFO 2026-06-04 21:12:02 MarkDuplicates Tracking 1351258 as yet unmatched pairs. 56731 records in RAM.
INFO 2026-06-04 21:12:04 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,236
INFO 2026-06-04 21:12:04 MarkDuplicates Tracking 1349112 as yet unmatched pairs. 54539 records in RAM.
INFO 2026-06-04 21:12:05 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:96,304,799
INFO 2026-06-04 21:12:05 MarkDuplicates Tracking 1347669 as yet unmatched pairs. 53051 records in RAM.
INFO 2026-06-04 21:12:07 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:98,554,287
INFO 2026-06-04 21:12:07 MarkDuplicates Tracking 1345017 as yet unmatched pairs. 50352 records in RAM.
INFO 2026-06-04 21:12:08 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:106,452,821
INFO 2026-06-04 21:12:08 MarkDuplicates Tracking 1342445 as yet unmatched pairs. 47714 records in RAM.
INFO 2026-06-04 21:12:09 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:109,984,891
INFO 2026-06-04 21:12:09 MarkDuplicates Tracking 1340813 as yet unmatched pairs. 46052 records in RAM.
INFO 2026-06-04 21:12:11 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:113,444,289
INFO 2026-06-04 21:12:11 MarkDuplicates Tracking 1339404 as yet unmatched pairs. 44615 records in RAM.
INFO 2026-06-04 21:12:12 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:128,113,223
INFO 2026-06-04 21:12:12 MarkDuplicates Tracking 1337199 as yet unmatched pairs. 42334 records in RAM.
INFO 2026-06-04 21:12:14 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:131,516,931
INFO 2026-06-04 21:12:14 MarkDuplicates Tracking 1335185 as yet unmatched pairs. 40263 records in RAM.
INFO 2026-06-04 21:12:15 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,772
INFO 2026-06-04 21:12:15 MarkDuplicates Tracking 1333225 as yet unmatched pairs. 38266 records in RAM.
INFO 2026-06-04 21:12:17 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:151,604,668
INFO 2026-06-04 21:12:17 MarkDuplicates Tracking 1331063 as yet unmatched pairs. 36035 records in RAM.
INFO 2026-06-04 21:12:18 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:159,430,925
INFO 2026-06-04 21:12:18 MarkDuplicates Tracking 1328765 as yet unmatched pairs. 33672 records in RAM.
INFO 2026-06-04 21:12:20 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:170,961,665
INFO 2026-06-04 21:12:20 MarkDuplicates Tracking 1326392 as yet unmatched pairs. 31249 records in RAM.
INFO 2026-06-04 21:12:21 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:176,123,202
INFO 2026-06-04 21:12:21 MarkDuplicates Tracking 1324155 as yet unmatched pairs. 28973 records in RAM.
INFO 2026-06-04 21:12:23 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:178,782,213
INFO 2026-06-04 21:12:23 MarkDuplicates Tracking 1322079 as yet unmatched pairs. 26878 records in RAM.
INFO 2026-06-04 21:12:24 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:189,563,723
INFO 2026-06-04 21:12:24 MarkDuplicates Tracking 1320423 as yet unmatched pairs. 25165 records in RAM.
INFO 2026-06-04 21:12:26 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:196,145,911
INFO 2026-06-04 21:12:26 MarkDuplicates Tracking 1317656 as yet unmatched pairs. 22357 records in RAM.
INFO 2026-06-04 21:12:27 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:201,276,875
INFO 2026-06-04 21:12:27 MarkDuplicates Tracking 1314980 as yet unmatched pairs. 19622 records in RAM.
INFO 2026-06-04 21:12:29 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:207,976,784
INFO 2026-06-04 21:12:29 MarkDuplicates Tracking 1312805 as yet unmatched pairs. 17388 records in RAM.
INFO 2026-06-04 21:12:30 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,425
INFO 2026-06-04 21:12:30 MarkDuplicates Tracking 1311237 as yet unmatched pairs. 15769 records in RAM.
INFO 2026-06-04 21:12:32 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:218,549,840
INFO 2026-06-04 21:12:32 MarkDuplicates Tracking 1308328 as yet unmatched pairs. 12810 records in RAM.
INFO 2026-06-04 21:12:34 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:224,845,261
INFO 2026-06-04 21:12:34 MarkDuplicates Tracking 1305657 as yet unmatched pairs. 10069 records in RAM.
INFO 2026-06-04 21:12:35 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:231,456,030
INFO 2026-06-04 21:12:35 MarkDuplicates Tracking 1303509 as yet unmatched pairs. 7875 records in RAM.
INFO 2026-06-04 21:12:37 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:235,052,644
INFO 2026-06-04 21:12:37 MarkDuplicates Tracking 1300954 as yet unmatched pairs. 5273 records in RAM.
INFO 2026-06-04 21:12:39 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:240,717,082
INFO 2026-06-04 21:12:39 MarkDuplicates Tracking 1297911 as yet unmatched pairs. 2138 records in RAM.
INFO 2026-06-04 21:12:41 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr3:4,680,679
INFO 2026-06-04 21:12:41 MarkDuplicates Tracking 1295622 as yet unmatched pairs. 69433 records in RAM.
INFO 2026-06-04 21:12:43 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:10,260,312
INFO 2026-06-04 21:12:43 MarkDuplicates Tracking 1293670 as yet unmatched pairs. 67436 records in RAM.
INFO 2026-06-04 21:12:45 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr3:13,365,961
INFO 2026-06-04 21:12:45 MarkDuplicates Tracking 1293067 as yet unmatched pairs. 66773 records in RAM.
INFO 2026-06-04 21:12:46 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:20,040,639
INFO 2026-06-04 21:12:46 MarkDuplicates Tracking 1288070 as yet unmatched pairs. 61689 records in RAM.
INFO 2026-06-04 21:12:48 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:33,813,604
INFO 2026-06-04 21:12:48 MarkDuplicates Tracking 1285887 as yet unmatched pairs. 59445 records in RAM.
INFO 2026-06-04 21:12:50 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,927
INFO 2026-06-04 21:12:50 MarkDuplicates Tracking 1287418 as yet unmatched pairs. 60933 records in RAM.
INFO 2026-06-04 21:12:51 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:44,641,903
INFO 2026-06-04 21:12:51 MarkDuplicates Tracking 1281033 as yet unmatched pairs. 54482 records in RAM.
INFO 2026-06-04 21:12:53 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:47,410,801
INFO 2026-06-04 21:12:53 MarkDuplicates Tracking 1278385 as yet unmatched pairs. 51778 records in RAM.
INFO 2026-06-04 21:12:54 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:48,581,311
INFO 2026-06-04 21:12:54 MarkDuplicates Tracking 1276173 as yet unmatched pairs. 49510 records in RAM.
INFO 2026-06-04 21:12:56 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:49,015,575
INFO 2026-06-04 21:12:56 MarkDuplicates Tracking 1274511 as yet unmatched pairs. 47816 records in RAM.
INFO 2026-06-04 21:12:57 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:49,653,838
INFO 2026-06-04 21:12:57 MarkDuplicates Tracking 1271028 as yet unmatched pairs. 44296 records in RAM.
INFO 2026-06-04 21:12:59 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr3:50,108,247
INFO 2026-06-04 21:12:59 MarkDuplicates Tracking 1268296 as yet unmatched pairs. 41519 records in RAM.
INFO 2026-06-04 21:13:01 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:51,674,319
INFO 2026-06-04 21:13:01 MarkDuplicates Tracking 1265218 as yet unmatched pairs. 38386 records in RAM.
INFO 2026-06-04 21:13:02 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:52,586,669
INFO 2026-06-04 21:13:02 MarkDuplicates Tracking 1262882 as yet unmatched pairs. 36022 records in RAM.
INFO 2026-06-04 21:13:04 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:58,105,099
INFO 2026-06-04 21:13:04 MarkDuplicates Tracking 1261055 as yet unmatched pairs. 34143 records in RAM.
INFO 2026-06-04 21:13:05 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:72,378,535
INFO 2026-06-04 21:13:05 MarkDuplicates Tracking 1257918 as yet unmatched pairs. 30917 records in RAM.
INFO 2026-06-04 21:13:07 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:101,685,894
INFO 2026-06-04 21:13:07 MarkDuplicates Tracking 1255752 as yet unmatched pairs. 28700 records in RAM.
INFO 2026-06-04 21:13:08 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:114,351,535
INFO 2026-06-04 21:13:08 MarkDuplicates Tracking 1253978 as yet unmatched pairs. 26855 records in RAM.
INFO 2026-06-04 21:13:10 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:122,700,116
INFO 2026-06-04 21:13:10 MarkDuplicates Tracking 1252740 as yet unmatched pairs. 25527 records in RAM.
INFO 2026-06-04 21:13:11 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:126,459,692
INFO 2026-06-04 21:13:11 MarkDuplicates Tracking 1249018 as yet unmatched pairs. 21746 records in RAM.
INFO 2026-06-04 21:13:13 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:129,315,752
INFO 2026-06-04 21:13:13 MarkDuplicates Tracking 1246339 as yet unmatched pairs. 18994 records in RAM.
INFO 2026-06-04 21:13:14 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:134,951,733
INFO 2026-06-04 21:13:14 MarkDuplicates Tracking 1243625 as yet unmatched pairs. 16239 records in RAM.
INFO 2026-06-04 21:13:16 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:143,020,626
INFO 2026-06-04 21:13:16 MarkDuplicates Tracking 1241424 as yet unmatched pairs. 13968 records in RAM.
INFO 2026-06-04 21:13:17 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:158,705,301
INFO 2026-06-04 21:13:17 MarkDuplicates Tracking 1238787 as yet unmatched pairs. 11279 records in RAM.
INFO 2026-06-04 21:13:19 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:179,224,042
INFO 2026-06-04 21:13:19 MarkDuplicates Tracking 1237448 as yet unmatched pairs. 9875 records in RAM.
INFO 2026-06-04 21:13:20 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:184,193,646
INFO 2026-06-04 21:13:20 MarkDuplicates Tracking 1234253 as yet unmatched pairs. 6628 records in RAM.
INFO 2026-06-04 21:13:21 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,877
INFO 2026-06-04 21:13:21 MarkDuplicates Tracking 1232256 as yet unmatched pairs. 4596 records in RAM.
INFO 2026-06-04 21:13:23 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:195,909,348
INFO 2026-06-04 21:13:23 MarkDuplicates Tracking 1229581 as yet unmatched pairs. 1859 records in RAM.
INFO 2026-06-04 21:13:25 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:876,550
INFO 2026-06-04 21:13:25 MarkDuplicates Tracking 1227465 as yet unmatched pairs. 38240 records in RAM.
INFO 2026-06-04 21:13:27 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:1,737,249
INFO 2026-06-04 21:13:27 MarkDuplicates Tracking 1225046 as yet unmatched pairs. 35769 records in RAM.
INFO 2026-06-04 21:13:28 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:3,186,649
INFO 2026-06-04 21:13:28 MarkDuplicates Tracking 1221729 as yet unmatched pairs. 32413 records in RAM.
INFO 2026-06-04 21:13:30 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr4:9,239,890
INFO 2026-06-04 21:13:30 MarkDuplicates Tracking 1219010 as yet unmatched pairs. 29632 records in RAM.
INFO 2026-06-04 21:13:32 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:25,847,398
INFO 2026-06-04 21:13:32 MarkDuplicates Tracking 1217910 as yet unmatched pairs. 28465 records in RAM.
INFO 2026-06-04 21:13:34 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:42,444,573
INFO 2026-06-04 21:13:34 MarkDuplicates Tracking 1215068 as yet unmatched pairs. 25555 records in RAM.
INFO 2026-06-04 21:13:35 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:57,032,453
INFO 2026-06-04 21:13:35 MarkDuplicates Tracking 1213151 as yet unmatched pairs. 23582 records in RAM.
INFO 2026-06-04 21:13:37 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:76,003,590
INFO 2026-06-04 21:13:37 MarkDuplicates Tracking 1210211 as yet unmatched pairs. 20578 records in RAM.
INFO 2026-06-04 21:13:39 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:82,821,037
INFO 2026-06-04 21:13:39 MarkDuplicates Tracking 1207448 as yet unmatched pairs. 17780 records in RAM.
INFO 2026-06-04 21:13:40 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:94,270,751
INFO 2026-06-04 21:13:40 MarkDuplicates Tracking 1205364 as yet unmatched pairs. 15621 records in RAM.
INFO 2026-06-04 21:13:42 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:108,657,584
INFO 2026-06-04 21:13:42 MarkDuplicates Tracking 1203427 as yet unmatched pairs. 13616 records in RAM.
INFO 2026-06-04 21:13:43 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:118,687,976
INFO 2026-06-04 21:13:43 MarkDuplicates Tracking 1200581 as yet unmatched pairs. 10726 records in RAM.
INFO 2026-06-04 21:13:45 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:139,067,673
INFO 2026-06-04 21:13:45 MarkDuplicates Tracking 1198447 as yet unmatched pairs. 8557 records in RAM.
INFO 2026-06-04 21:13:46 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:150,848,966
INFO 2026-06-04 21:13:46 MarkDuplicates Tracking 1196084 as yet unmatched pairs. 6138 records in RAM.
INFO 2026-06-04 21:13:48 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:163,519,452
INFO 2026-06-04 21:13:48 MarkDuplicates Tracking 1193746 as yet unmatched pairs. 3733 records in RAM.
INFO 2026-06-04 21:13:49 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:184,017,133
INFO 2026-06-04 21:13:49 MarkDuplicates Tracking 1191756 as yet unmatched pairs. 1650 records in RAM.
INFO 2026-06-04 21:13:51 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr5:140,077
INFO 2026-06-04 21:13:51 MarkDuplicates Tracking 1195438 as yet unmatched pairs. 86663 records in RAM.
INFO 2026-06-04 21:13:53 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:163,073
INFO 2026-06-04 21:13:53 MarkDuplicates Tracking 1191823 as yet unmatched pairs. 82995 records in RAM.
INFO 2026-06-04 21:13:54 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:466,640
INFO 2026-06-04 21:13:54 MarkDuplicates Tracking 1183678 as yet unmatched pairs. 74802 records in RAM.
INFO 2026-06-04 21:13:56 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:1,477,468
INFO 2026-06-04 21:13:56 MarkDuplicates Tracking 1187624 as yet unmatched pairs. 78701 records in RAM.
INFO 2026-06-04 21:13:58 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:6,750,382
INFO 2026-06-04 21:13:58 MarkDuplicates Tracking 1178576 as yet unmatched pairs. 69572 records in RAM.
INFO 2026-06-04 21:13:59 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:14,280,367
INFO 2026-06-04 21:13:59 MarkDuplicates Tracking 1178417 as yet unmatched pairs. 69369 records in RAM.
INFO 2026-06-04 21:14:00 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:14,473,993
INFO 2026-06-04 21:14:00 MarkDuplicates Tracking 1174498 as yet unmatched pairs. 65417 records in RAM.
INFO 2026-06-04 21:14:02 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:31,448,598
INFO 2026-06-04 21:14:02 MarkDuplicates Tracking 1170235 as yet unmatched pairs. 61107 records in RAM.
INFO 2026-06-04 21:14:04 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:36,953,702
INFO 2026-06-04 21:14:04 MarkDuplicates Tracking 1167876 as yet unmatched pairs. 58684 records in RAM.
INFO 2026-06-04 21:14:05 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:43,295,802
INFO 2026-06-04 21:14:05 MarkDuplicates Tracking 1165485 as yet unmatched pairs. 56251 records in RAM.
INFO 2026-06-04 21:14:07 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:60,899,704
INFO 2026-06-04 21:14:07 MarkDuplicates Tracking 1163334 as yet unmatched pairs. 54013 records in RAM.
INFO 2026-06-04 21:14:08 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:70,109,046
INFO 2026-06-04 21:14:08 MarkDuplicates Tracking 1161420 as yet unmatched pairs. 52040 records in RAM.
INFO 2026-06-04 21:14:10 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:72,199,896
INFO 2026-06-04 21:14:10 MarkDuplicates Tracking 1160182 as yet unmatched pairs. 50770 records in RAM.
INFO 2026-06-04 21:14:12 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:80,633,962
INFO 2026-06-04 21:14:12 MarkDuplicates Tracking 1157825 as yet unmatched pairs. 48380 records in RAM.
INFO 2026-06-04 21:14:14 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:95,482,494
INFO 2026-06-04 21:14:14 MarkDuplicates Tracking 1155660 as yet unmatched pairs. 46176 records in RAM.
INFO 2026-06-04 21:14:16 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:112,878,719
INFO 2026-06-04 21:14:16 MarkDuplicates Tracking 1153072 as yet unmatched pairs. 43539 records in RAM.
INFO 2026-06-04 21:14:17 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:127,524,683
INFO 2026-06-04 21:14:17 MarkDuplicates Tracking 1150692 as yet unmatched pairs. 41126 records in RAM.
INFO 2026-06-04 21:14:19 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:134,741,196
INFO 2026-06-04 21:14:19 MarkDuplicates Tracking 1148411 as yet unmatched pairs. 38757 records in RAM.
INFO 2026-06-04 21:14:20 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,546
INFO 2026-06-04 21:14:20 MarkDuplicates Tracking 1146619 as yet unmatched pairs. 36927 records in RAM.
INFO 2026-06-04 21:14:22 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:140,537,443
INFO 2026-06-04 21:14:22 MarkDuplicates Tracking 1143622 as yet unmatched pairs. 33892 records in RAM.
INFO 2026-06-04 21:14:23 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:141,193,889
INFO 2026-06-04 21:14:23 MarkDuplicates Tracking 1141889 as yet unmatched pairs. 32137 records in RAM.
INFO 2026-06-04 21:14:25 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:141,584,192
INFO 2026-06-04 21:14:25 MarkDuplicates Tracking 1139214 as yet unmatched pairs. 29443 records in RAM.
INFO 2026-06-04 21:14:26 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,050,262
INFO 2026-06-04 21:14:26 MarkDuplicates Tracking 1136543 as yet unmatched pairs. 26717 records in RAM.
INFO 2026-06-04 21:14:28 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,563
INFO 2026-06-04 21:14:28 MarkDuplicates Tracking 1175780 as yet unmatched pairs. 65934 records in RAM.
INFO 2026-06-04 21:14:29 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,120
INFO 2026-06-04 21:14:29 MarkDuplicates Tracking 1159403 as yet unmatched pairs. 49538 records in RAM.
INFO 2026-06-04 21:14:31 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,444,342
INFO 2026-06-04 21:14:31 MarkDuplicates Tracking 1130415 as yet unmatched pairs. 20528 records in RAM.
INFO 2026-06-04 21:14:32 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:154,409,715
INFO 2026-06-04 21:14:32 MarkDuplicates Tracking 1125955 as yet unmatched pairs. 16026 records in RAM.
INFO 2026-06-04 21:14:34 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:163,471,258
INFO 2026-06-04 21:14:34 MarkDuplicates Tracking 1123231 as yet unmatched pairs. 13259 records in RAM.
INFO 2026-06-04 21:14:35 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,840
INFO 2026-06-04 21:14:35 MarkDuplicates Tracking 1125006 as yet unmatched pairs. 15008 records in RAM.
INFO 2026-06-04 21:14:37 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:176,651,790
INFO 2026-06-04 21:14:37 MarkDuplicates Tracking 1118543 as yet unmatched pairs. 8508 records in RAM.
INFO 2026-06-04 21:14:38 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:177,607,463
INFO 2026-06-04 21:14:38 MarkDuplicates Tracking 1115810 as yet unmatched pairs. 5746 records in RAM.
INFO 2026-06-04 21:14:41 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr5:179,766,586
INFO 2026-06-04 21:14:41 MarkDuplicates Tracking 1113722 as yet unmatched pairs. 3618 records in RAM.
INFO 2026-06-04 21:14:42 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:181,237,683
INFO 2026-06-04 21:14:42 MarkDuplicates Tracking 1113302 as yet unmatched pairs. 3165 records in RAM.
INFO 2026-06-04 21:14:44 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:4,121,267
INFO 2026-06-04 21:14:44 MarkDuplicates Tracking 1108568 as yet unmatched pairs. 73233 records in RAM.
INFO 2026-06-04 21:14:46 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:12,792,867
INFO 2026-06-04 21:14:46 MarkDuplicates Tracking 1106038 as yet unmatched pairs. 70651 records in RAM.
INFO 2026-06-04 21:14:47 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr6:24,848,049
INFO 2026-06-04 21:14:47 MarkDuplicates Tracking 1104053 as yet unmatched pairs. 68600 records in RAM.
INFO 2026-06-04 21:14:49 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,309
INFO 2026-06-04 21:14:49 MarkDuplicates Tracking 1102660 as yet unmatched pairs. 67171 records in RAM.
INFO 2026-06-04 21:14:51 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:26,368,789
INFO 2026-06-04 21:14:51 MarkDuplicates Tracking 1099067 as yet unmatched pairs. 63550 records in RAM.
INFO 2026-06-04 21:14:53 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,350
INFO 2026-06-04 21:14:53 MarkDuplicates Tracking 1098233 as yet unmatched pairs. 62676 records in RAM.
INFO 2026-06-04 21:14:54 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:28,908,984
INFO 2026-06-04 21:14:54 MarkDuplicates Tracking 1094086 as yet unmatched pairs. 58507 records in RAM.
INFO 2026-06-04 21:14:56 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:30,346,539
INFO 2026-06-04 21:14:56 MarkDuplicates Tracking 1091922 as yet unmatched pairs. 56325 records in RAM.
INFO 2026-06-04 21:14:57 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:30,899,231
INFO 2026-06-04 21:14:57 MarkDuplicates Tracking 1089568 as yet unmatched pairs. 53931 records in RAM.
INFO 2026-06-04 21:14:59 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:31,464,266
INFO 2026-06-04 21:14:59 MarkDuplicates Tracking 1086971 as yet unmatched pairs. 51306 records in RAM.
INFO 2026-06-04 21:15:00 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,671,966
INFO 2026-06-04 21:15:00 MarkDuplicates Tracking 1084641 as yet unmatched pairs. 48945 records in RAM.
INFO 2026-06-04 21:15:02 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:32,065,040
INFO 2026-06-04 21:15:02 MarkDuplicates Tracking 1082895 as yet unmatched pairs. 47175 records in RAM.
INFO 2026-06-04 21:15:03 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:32,838,011
INFO 2026-06-04 21:15:03 MarkDuplicates Tracking 1080030 as yet unmatched pairs. 44290 records in RAM.
INFO 2026-06-04 21:15:04 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:33,301,746
INFO 2026-06-04 21:15:04 MarkDuplicates Tracking 1078818 as yet unmatched pairs. 43053 records in RAM.
INFO 2026-06-04 21:15:06 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:33,687,535
INFO 2026-06-04 21:15:06 MarkDuplicates Tracking 1074741 as yet unmatched pairs. 38941 records in RAM.
INFO 2026-06-04 21:15:07 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:36,486,892
INFO 2026-06-04 21:15:07 MarkDuplicates Tracking 1072303 as yet unmatched pairs. 36451 records in RAM.
INFO 2026-06-04 21:15:09 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:42,269,472
INFO 2026-06-04 21:15:09 MarkDuplicates Tracking 1069518 as yet unmatched pairs. 33600 records in RAM.
INFO 2026-06-04 21:15:11 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:43,513,124
INFO 2026-06-04 21:15:11 MarkDuplicates Tracking 1066867 as yet unmatched pairs. 30907 records in RAM.
INFO 2026-06-04 21:15:12 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:53,269,098
INFO 2026-06-04 21:15:12 MarkDuplicates Tracking 1064713 as yet unmatched pairs. 28565 records in RAM.
INFO 2026-06-04 21:15:14 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:75,143,276
INFO 2026-06-04 21:15:14 MarkDuplicates Tracking 1062187 as yet unmatched pairs. 25981 records in RAM.
INFO 2026-06-04 21:15:15 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:87,260,372
INFO 2026-06-04 21:15:15 MarkDuplicates Tracking 1060037 as yet unmatched pairs. 23780 records in RAM.
INFO 2026-06-04 21:15:17 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:99,402,558
INFO 2026-06-04 21:15:17 MarkDuplicates Tracking 1057966 as yet unmatched pairs. 21672 records in RAM.
INFO 2026-06-04 21:15:19 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:109,716,532
INFO 2026-06-04 21:15:19 MarkDuplicates Tracking 1055002 as yet unmatched pairs. 18661 records in RAM.
INFO 2026-06-04 21:15:21 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr6:118,465,129
INFO 2026-06-04 21:15:21 MarkDuplicates Tracking 1052394 as yet unmatched pairs. 15998 records in RAM.
INFO 2026-06-04 21:15:23 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:135,323,277
INFO 2026-06-04 21:15:23 MarkDuplicates Tracking 1050164 as yet unmatched pairs. 13726 records in RAM.
INFO 2026-06-04 21:15:25 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:144,440,456
INFO 2026-06-04 21:15:25 MarkDuplicates Tracking 1048414 as yet unmatched pairs. 11913 records in RAM.
INFO 2026-06-04 21:15:26 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:151,353,613
INFO 2026-06-04 21:15:26 MarkDuplicates Tracking 1045421 as yet unmatched pairs. 8880 records in RAM.
INFO 2026-06-04 21:15:27 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:158,536,719
INFO 2026-06-04 21:15:27 MarkDuplicates Tracking 1042826 as yet unmatched pairs. 6241 records in RAM.
INFO 2026-06-04 21:15:29 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,814
INFO 2026-06-04 21:15:29 MarkDuplicates Tracking 1040403 as yet unmatched pairs. 3792 records in RAM.
INFO 2026-06-04 21:15:31 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:167,965,918
INFO 2026-06-04 21:15:31 MarkDuplicates Tracking 1038227 as yet unmatched pairs. 1575 records in RAM.
INFO 2026-06-04 21:15:33 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr7:1,936,850
INFO 2026-06-04 21:15:33 MarkDuplicates Tracking 1035291 as yet unmatched pairs. 74371 records in RAM.
INFO 2026-06-04 21:15:34 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:4,788,245
INFO 2026-06-04 21:15:34 MarkDuplicates Tracking 1031768 as yet unmatched pairs. 70787 records in RAM.
INFO 2026-06-04 21:15:36 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,079
INFO 2026-06-04 21:15:36 MarkDuplicates Tracking 1039063 as yet unmatched pairs. 78049 records in RAM.
INFO 2026-06-04 21:15:37 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr7:6,041,123
INFO 2026-06-04 21:15:37 MarkDuplicates Tracking 1026425 as yet unmatched pairs. 65391 records in RAM.
INFO 2026-06-04 21:15:39 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:19,708,885
INFO 2026-06-04 21:15:39 MarkDuplicates Tracking 1023664 as yet unmatched pairs. 62554 records in RAM.
INFO 2026-06-04 21:15:40 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:26,854,787
INFO 2026-06-04 21:15:40 MarkDuplicates Tracking 1021557 as yet unmatched pairs. 60406 records in RAM.
INFO 2026-06-04 21:15:42 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:37,271,877
INFO 2026-06-04 21:15:42 MarkDuplicates Tracking 1019243 as yet unmatched pairs. 58027 records in RAM.
INFO 2026-06-04 21:15:43 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:44,116,098
INFO 2026-06-04 21:15:43 MarkDuplicates Tracking 1016841 as yet unmatched pairs. 55592 records in RAM.
INFO 2026-06-04 21:15:45 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:45,084,118
INFO 2026-06-04 21:15:45 MarkDuplicates Tracking 1013904 as yet unmatched pairs. 52617 records in RAM.
INFO 2026-06-04 21:15:47 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:56,068,520
INFO 2026-06-04 21:15:47 MarkDuplicates Tracking 1011858 as yet unmatched pairs. 50523 records in RAM.
INFO 2026-06-04 21:15:48 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,544
INFO 2026-06-04 21:15:48 MarkDuplicates Tracking 1009350 as yet unmatched pairs. 47962 records in RAM.
INFO 2026-06-04 21:15:50 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr7:73,597,577
INFO 2026-06-04 21:15:50 MarkDuplicates Tracking 1008085 as yet unmatched pairs. 46689 records in RAM.
INFO 2026-06-04 21:15:52 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:75,148,207
INFO 2026-06-04 21:15:52 MarkDuplicates Tracking 1006128 as yet unmatched pairs. 44699 records in RAM.
INFO 2026-06-04 21:15:54 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:76,028,643
INFO 2026-06-04 21:15:54 MarkDuplicates Tracking 1004283 as yet unmatched pairs. 42835 records in RAM.
INFO 2026-06-04 21:15:55 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:82,950,230
INFO 2026-06-04 21:15:55 MarkDuplicates Tracking 1002215 as yet unmatched pairs. 40731 records in RAM.
INFO 2026-06-04 21:15:57 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:92,070,057
INFO 2026-06-04 21:15:57 MarkDuplicates Tracking 1000934 as yet unmatched pairs. 39422 records in RAM.
INFO 2026-06-04 21:15:58 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,184
INFO 2026-06-04 21:15:58 MarkDuplicates Tracking 998226 as yet unmatched pairs. 36681 records in RAM.
INFO 2026-06-04 21:16:00 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:98,917,604
INFO 2026-06-04 21:16:00 MarkDuplicates Tracking 995201 as yet unmatched pairs. 33598 records in RAM.
INFO 2026-06-04 21:16:01 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:100,092,970
INFO 2026-06-04 21:16:01 MarkDuplicates Tracking 994079 as yet unmatched pairs. 32441 records in RAM.
INFO 2026-06-04 21:16:03 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,572,961
INFO 2026-06-04 21:16:03 MarkDuplicates Tracking 990095 as yet unmatched pairs. 28422 records in RAM.
INFO 2026-06-04 21:16:04 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:101,237,530
INFO 2026-06-04 21:16:04 MarkDuplicates Tracking 987210 as yet unmatched pairs. 25513 records in RAM.
INFO 2026-06-04 21:16:06 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:102,568,076
INFO 2026-06-04 21:16:06 MarkDuplicates Tracking 986357 as yet unmatched pairs. 24637 records in RAM.
INFO 2026-06-04 21:16:07 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:105,113,075
INFO 2026-06-04 21:16:07 MarkDuplicates Tracking 984082 as yet unmatched pairs. 22329 records in RAM.
INFO 2026-06-04 21:16:08 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:116,251,818
INFO 2026-06-04 21:16:08 MarkDuplicates Tracking 981848 as yet unmatched pairs. 20028 records in RAM.
INFO 2026-06-04 21:16:10 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:127,703,313
INFO 2026-06-04 21:16:10 MarkDuplicates Tracking 981714 as yet unmatched pairs. 19836 records in RAM.
INFO 2026-06-04 21:16:12 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:130,401,881
INFO 2026-06-04 21:16:12 MarkDuplicates Tracking 976801 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-04 21:16:13 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:138,573,606
INFO 2026-06-04 21:16:13 MarkDuplicates Tracking 974849 as yet unmatched pairs. 12871 records in RAM.
INFO 2026-06-04 21:16:15 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:140,794,413
INFO 2026-06-04 21:16:15 MarkDuplicates Tracking 972236 as yet unmatched pairs. 10233 records in RAM.
INFO 2026-06-04 21:16:17 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:144,285,518
INFO 2026-06-04 21:16:17 MarkDuplicates Tracking 970535 as yet unmatched pairs. 8508 records in RAM.
INFO 2026-06-04 21:16:18 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:150,626,669
INFO 2026-06-04 21:16:18 MarkDuplicates Tracking 967785 as yet unmatched pairs. 5727 records in RAM.
INFO 2026-06-04 21:16:20 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:152,181,191
INFO 2026-06-04 21:16:20 MarkDuplicates Tracking 965077 as yet unmatched pairs. 2990 records in RAM.
INFO 2026-06-04 21:16:21 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:158,788,355
INFO 2026-06-04 21:16:21 MarkDuplicates Tracking 962723 as yet unmatched pairs. 580 records in RAM.
INFO 2026-06-04 21:16:24 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr8:11,846,562
INFO 2026-06-04 21:16:24 MarkDuplicates Tracking 960595 as yet unmatched pairs. 46896 records in RAM.
INFO 2026-06-04 21:16:25 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr8:22,138,932
INFO 2026-06-04 21:16:25 MarkDuplicates Tracking 957603 as yet unmatched pairs. 43854 records in RAM.
INFO 2026-06-04 21:16:27 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr8:24,917,360
INFO 2026-06-04 21:16:27 MarkDuplicates Tracking 954880 as yet unmatched pairs. 41105 records in RAM.
INFO 2026-06-04 21:16:28 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:30,104,388
INFO 2026-06-04 21:16:28 MarkDuplicates Tracking 952783 as yet unmatched pairs. 38957 records in RAM.
INFO 2026-06-04 21:16:30 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr8:38,347,629
INFO 2026-06-04 21:16:30 MarkDuplicates Tracking 951983 as yet unmatched pairs. 38096 records in RAM.
INFO 2026-06-04 21:17:30 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 60s. Last read position: chr8:42,405,411
INFO 2026-06-04 21:17:30 MarkDuplicates Tracking 948221 as yet unmatched pairs. 34303 records in RAM.
INFO 2026-06-04 21:17:32 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:53,967,995
INFO 2026-06-04 21:17:32 MarkDuplicates Tracking 945440 as yet unmatched pairs. 31480 records in RAM.
INFO 2026-06-04 21:17:33 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr8:66,847,195
INFO 2026-06-04 21:17:33 MarkDuplicates Tracking 942764 as yet unmatched pairs. 28762 records in RAM.
INFO 2026-06-04 21:17:35 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr8:80,643,094
INFO 2026-06-04 21:17:35 MarkDuplicates Tracking 940766 as yet unmatched pairs. 26710 records in RAM.
INFO 2026-06-04 21:17:37 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr8:97,687,553
INFO 2026-06-04 21:17:37 MarkDuplicates Tracking 938345 as yet unmatched pairs. 24224 records in RAM.
INFO 2026-06-04 21:17:38 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr8:101,577,472
INFO 2026-06-04 21:17:38 MarkDuplicates Tracking 935849 as yet unmatched pairs. 21688 records in RAM.
INFO 2026-06-04 21:17:40 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:119,221,616
INFO 2026-06-04 21:17:40 MarkDuplicates Tracking 934024 as yet unmatched pairs. 19814 records in RAM.
INFO 2026-06-04 21:17:42 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:131,968,415
INFO 2026-06-04 21:17:42 MarkDuplicates Tracking 931350 as yet unmatched pairs. 17081 records in RAM.
INFO 2026-06-04 21:17:43 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:142,464,624
INFO 2026-06-04 21:17:43 MarkDuplicates Tracking 929308 as yet unmatched pairs. 14986 records in RAM.
INFO 2026-06-04 21:17:45 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr8:142,543,396
INFO 2026-06-04 21:17:45 MarkDuplicates Tracking 927741 as yet unmatched pairs. 13370 records in RAM.
INFO 2026-06-04 21:17:47 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,817,875
INFO 2026-06-04 21:17:47 MarkDuplicates Tracking 922119 as yet unmatched pairs. 7704 records in RAM.
INFO 2026-06-04 21:17:49 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,904
INFO 2026-06-04 21:17:49 MarkDuplicates Tracking 920957 as yet unmatched pairs. 6532 records in RAM.
INFO 2026-06-04 21:17:50 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:144,264,692
INFO 2026-06-04 21:17:50 MarkDuplicates Tracking 917506 as yet unmatched pairs. 3046 records in RAM.
INFO 2026-06-04 21:17:52 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr9:173,325
INFO 2026-06-04 21:17:52 MarkDuplicates Tracking 914681 as yet unmatched pairs. 72372 records in RAM.
INFO 2026-06-04 21:17:54 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr9:6,981,059
INFO 2026-06-04 21:17:54 MarkDuplicates Tracking 912141 as yet unmatched pairs. 69790 records in RAM.
INFO 2026-06-04 21:17:56 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr9:18,504,858
INFO 2026-06-04 21:17:56 MarkDuplicates Tracking 909782 as yet unmatched pairs. 67329 records in RAM.
INFO 2026-06-04 21:17:58 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,958
INFO 2026-06-04 21:17:58 MarkDuplicates Tracking 907453 as yet unmatched pairs. 64957 records in RAM.
INFO 2026-06-04 21:17:59 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr9:35,062,081
INFO 2026-06-04 21:17:59 MarkDuplicates Tracking 905404 as yet unmatched pairs. 62879 records in RAM.
INFO 2026-06-04 21:18:01 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr9:35,813,044
INFO 2026-06-04 21:18:01 MarkDuplicates Tracking 902431 as yet unmatched pairs. 59884 records in RAM.
INFO 2026-06-04 21:18:02 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr9:37,784,883
INFO 2026-06-04 21:18:02 MarkDuplicates Tracking 899492 as yet unmatched pairs. 56921 records in RAM.
INFO 2026-06-04 21:18:04 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr9:70,259,031
INFO 2026-06-04 21:18:04 MarkDuplicates Tracking 898303 as yet unmatched pairs. 55679 records in RAM.
INFO 2026-06-04 21:18:05 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr9:83,971,709
INFO 2026-06-04 21:18:05 MarkDuplicates Tracking 896345 as yet unmatched pairs. 53662 records in RAM.
INFO 2026-06-04 21:18:07 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr9:92,080,023
INFO 2026-06-04 21:18:07 MarkDuplicates Tracking 893356 as yet unmatched pairs. 50644 records in RAM.
INFO 2026-06-04 21:18:08 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr9:93,660,534
INFO 2026-06-04 21:18:08 MarkDuplicates Tracking 890593 as yet unmatched pairs. 47844 records in RAM.
INFO 2026-06-04 21:18:10 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr9:99,015,989
INFO 2026-06-04 21:18:10 MarkDuplicates Tracking 887916 as yet unmatched pairs. 45122 records in RAM.
INFO 2026-06-04 21:18:11 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr9:108,999,155
INFO 2026-06-04 21:18:11 MarkDuplicates Tracking 885622 as yet unmatched pairs. 42781 records in RAM.
INFO 2026-06-04 21:18:13 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr9:113,596,900
INFO 2026-06-04 21:18:13 MarkDuplicates Tracking 882984 as yet unmatched pairs. 40107 records in RAM.
INFO 2026-06-04 21:18:14 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:115,087,044
INFO 2026-06-04 21:18:14 MarkDuplicates Tracking 880837 as yet unmatched pairs. 37942 records in RAM.
INFO 2026-06-04 21:18:16 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:121,157,987
INFO 2026-06-04 21:18:16 MarkDuplicates Tracking 878884 as yet unmatched pairs. 35956 records in RAM.
INFO 2026-06-04 21:18:17 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr9:124,860,214
INFO 2026-06-04 21:18:17 MarkDuplicates Tracking 877726 as yet unmatched pairs. 34754 records in RAM.
INFO 2026-06-04 21:18:19 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr9:127,825,810
INFO 2026-06-04 21:18:19 MarkDuplicates Tracking 873060 as yet unmatched pairs. 30047 records in RAM.
INFO 2026-06-04 21:18:20 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr9:128,584,740
INFO 2026-06-04 21:18:20 MarkDuplicates Tracking 870605 as yet unmatched pairs. 27574 records in RAM.
INFO 2026-06-04 21:18:22 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr9:129,010,149
INFO 2026-06-04 21:18:22 MarkDuplicates Tracking 867958 as yet unmatched pairs. 24905 records in RAM.
INFO 2026-06-04 21:18:23 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr9:130,403,749
INFO 2026-06-04 21:18:23 MarkDuplicates Tracking 865119 as yet unmatched pairs. 22045 records in RAM.
INFO 2026-06-04 21:18:25 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:131,464,993
INFO 2026-06-04 21:18:25 MarkDuplicates Tracking 863572 as yet unmatched pairs. 20483 records in RAM.
INFO 2026-06-04 21:18:26 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:132,687,262
INFO 2026-06-04 21:18:26 MarkDuplicates Tracking 859731 as yet unmatched pairs. 16620 records in RAM.
INFO 2026-06-04 21:18:27 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:133,363,618
INFO 2026-06-04 21:18:27 MarkDuplicates Tracking 857642 as yet unmatched pairs. 14509 records in RAM.
INFO 2026-06-04 21:18:29 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:135,119,778
INFO 2026-06-04 21:18:29 MarkDuplicates Tracking 854805 as yet unmatched pairs. 11638 records in RAM.
INFO 2026-06-04 21:18:30 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:136,505,557
INFO 2026-06-04 21:18:30 MarkDuplicates Tracking 851992 as yet unmatched pairs. 8806 records in RAM.
INFO 2026-06-04 21:18:32 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:137,022,400
INFO 2026-06-04 21:18:32 MarkDuplicates Tracking 849297 as yet unmatched pairs. 6073 records in RAM.
INFO 2026-06-04 21:18:33 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:137,435,274
INFO 2026-06-04 21:18:33 MarkDuplicates Tracking 845801 as yet unmatched pairs. 2553 records in RAM.
INFO 2026-06-04 21:18:35 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr10:390,855
INFO 2026-06-04 21:18:35 MarkDuplicates Tracking 843146 as yet unmatched pairs. 46745 records in RAM.
INFO 2026-06-04 21:18:37 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr10:5,748,233
INFO 2026-06-04 21:18:37 MarkDuplicates Tracking 840679 as yet unmatched pairs. 44253 records in RAM.
INFO 2026-06-04 21:18:39 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr10:14,521,289
INFO 2026-06-04 21:18:39 MarkDuplicates Tracking 838105 as yet unmatched pairs. 41641 records in RAM.
INFO 2026-06-04 21:18:40 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr10:26,211,873
INFO 2026-06-04 21:18:40 MarkDuplicates Tracking 835531 as yet unmatched pairs. 39036 records in RAM.
INFO 2026-06-04 21:18:42 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:32,034,740
INFO 2026-06-04 21:18:42 MarkDuplicates Tracking 834754 as yet unmatched pairs. 38230 records in RAM.
INFO 2026-06-04 21:18:44 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr10:43,126,555
INFO 2026-06-04 21:18:44 MarkDuplicates Tracking 831223 as yet unmatched pairs. 34681 records in RAM.
INFO 2026-06-04 21:18:46 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:46,837,312
INFO 2026-06-04 21:18:46 MarkDuplicates Tracking 829187 as yet unmatched pairs. 32629 records in RAM.
INFO 2026-06-04 21:18:47 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr10:50,129,430
INFO 2026-06-04 21:18:47 MarkDuplicates Tracking 827250 as yet unmatched pairs. 30659 records in RAM.
INFO 2026-06-04 21:18:49 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr10:68,646,531
INFO 2026-06-04 21:18:49 MarkDuplicates Tracking 824807 as yet unmatched pairs. 28171 records in RAM.
INFO 2026-06-04 21:18:50 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:72,220,372
INFO 2026-06-04 21:18:50 MarkDuplicates Tracking 822538 as yet unmatched pairs. 25869 records in RAM.
INFO 2026-06-04 21:18:52 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr10:75,168,543
INFO 2026-06-04 21:18:52 MarkDuplicates Tracking 819708 as yet unmatched pairs. 23025 records in RAM.
INFO 2026-06-04 21:18:53 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr10:80,468,635
INFO 2026-06-04 21:18:53 MarkDuplicates Tracking 817368 as yet unmatched pairs. 20645 records in RAM.
INFO 2026-06-04 21:18:55 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:89,418,481
INFO 2026-06-04 21:18:55 MarkDuplicates Tracking 815189 as yet unmatched pairs. 18428 records in RAM.
INFO 2026-06-04 21:18:56 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr10:96,157,873
INFO 2026-06-04 21:18:56 MarkDuplicates Tracking 812941 as yet unmatched pairs. 16135 records in RAM.
INFO 2026-06-04 21:18:58 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:100,243,703
INFO 2026-06-04 21:18:58 MarkDuplicates Tracking 810291 as yet unmatched pairs. 13458 records in RAM.
INFO 2026-06-04 21:18:59 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:102,397,558
INFO 2026-06-04 21:18:59 MarkDuplicates Tracking 807948 as yet unmatched pairs. 11092 records in RAM.
INFO 2026-06-04 21:19:01 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:110,881,401
INFO 2026-06-04 21:19:01 MarkDuplicates Tracking 805270 as yet unmatched pairs. 8369 records in RAM.
INFO 2026-06-04 21:19:02 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,183
INFO 2026-06-04 21:19:02 MarkDuplicates Tracking 803421 as yet unmatched pairs. 6482 records in RAM.
INFO 2026-06-04 21:19:03 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:125,740,463
INFO 2026-06-04 21:19:03 MarkDuplicates Tracking 800409 as yet unmatched pairs. 3424 records in RAM.
INFO 2026-06-04 21:19:05 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr10:131,943,976
INFO 2026-06-04 21:19:05 MarkDuplicates Tracking 798466 as yet unmatched pairs. 1459 records in RAM.
INFO 2026-06-04 21:19:08 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr11:405,869
INFO 2026-06-04 21:19:08 MarkDuplicates Tracking 795870 as yet unmatched pairs. 82704 records in RAM.
INFO 2026-06-04 21:19:09 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:883,284
INFO 2026-06-04 21:19:09 MarkDuplicates Tracking 792659 as yet unmatched pairs. 79476 records in RAM.
INFO 2026-06-04 21:19:11 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr11:3,019,149
INFO 2026-06-04 21:19:11 MarkDuplicates Tracking 789853 as yet unmatched pairs. 76647 records in RAM.
INFO 2026-06-04 21:19:12 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr11:6,394,440
INFO 2026-06-04 21:19:12 MarkDuplicates Tracking 787154 as yet unmatched pairs. 73904 records in RAM.
INFO 2026-06-04 21:19:14 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr11:8,750,662
INFO 2026-06-04 21:19:14 MarkDuplicates Tracking 784500 as yet unmatched pairs. 71225 records in RAM.
INFO 2026-06-04 21:19:16 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr11:13,694,798
INFO 2026-06-04 21:19:16 MarkDuplicates Tracking 782535 as yet unmatched pairs. 69234 records in RAM.
INFO 2026-06-04 21:19:18 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:19,934,105
INFO 2026-06-04 21:19:18 MarkDuplicates Tracking 779998 as yet unmatched pairs. 66673 records in RAM.
INFO 2026-06-04 21:19:20 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr11:34,133,052
INFO 2026-06-04 21:19:20 MarkDuplicates Tracking 777463 as yet unmatched pairs. 64095 records in RAM.
INFO 2026-06-04 21:19:21 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:46,397,720
INFO 2026-06-04 21:19:21 MarkDuplicates Tracking 774875 as yet unmatched pairs. 61473 records in RAM.
INFO 2026-06-04 21:19:23 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr11:47,744,046
INFO 2026-06-04 21:19:23 MarkDuplicates Tracking 772246 as yet unmatched pairs. 58823 records in RAM.
INFO 2026-06-04 21:19:24 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:59,151,867
INFO 2026-06-04 21:19:24 MarkDuplicates Tracking 769888 as yet unmatched pairs. 56449 records in RAM.
INFO 2026-06-04 21:19:26 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr11:60,931,828
INFO 2026-06-04 21:19:26 MarkDuplicates Tracking 767943 as yet unmatched pairs. 54482 records in RAM.
INFO 2026-06-04 21:19:27 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,331,125
INFO 2026-06-04 21:19:27 MarkDuplicates Tracking 764739 as yet unmatched pairs. 51235 records in RAM.
INFO 2026-06-04 21:19:29 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr11:62,631,102
INFO 2026-06-04 21:19:29 MarkDuplicates Tracking 762809 as yet unmatched pairs. 49284 records in RAM.
INFO 2026-06-04 21:19:30 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:64,194,190
INFO 2026-06-04 21:19:30 MarkDuplicates Tracking 759867 as yet unmatched pairs. 46327 records in RAM.
INFO 2026-06-04 21:19:32 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:64,778,014
INFO 2026-06-04 21:19:32 MarkDuplicates Tracking 757899 as yet unmatched pairs. 44343 records in RAM.
INFO 2026-06-04 21:19:33 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:65,526,189
INFO 2026-06-04 21:19:33 MarkDuplicates Tracking 754216 as yet unmatched pairs. 40599 records in RAM.
INFO 2026-06-04 21:19:35 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,297
INFO 2026-06-04 21:19:35 MarkDuplicates Tracking 752037 as yet unmatched pairs. 38402 records in RAM.
INFO 2026-06-04 21:19:36 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:66,624,937
INFO 2026-06-04 21:19:36 MarkDuplicates Tracking 749942 as yet unmatched pairs. 36295 records in RAM.
INFO 2026-06-04 21:19:38 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:67,435,874
INFO 2026-06-04 21:19:38 MarkDuplicates Tracking 746225 as yet unmatched pairs. 32558 records in RAM.
INFO 2026-06-04 21:19:39 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:69,009,912
INFO 2026-06-04 21:19:39 MarkDuplicates Tracking 742768 as yet unmatched pairs. 29079 records in RAM.
INFO 2026-06-04 21:19:41 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,603
INFO 2026-06-04 21:19:41 MarkDuplicates Tracking 741283 as yet unmatched pairs. 27562 records in RAM.
INFO 2026-06-04 21:19:43 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr11:72,840,795
INFO 2026-06-04 21:19:43 MarkDuplicates Tracking 737593 as yet unmatched pairs. 23842 records in RAM.
INFO 2026-06-04 21:19:45 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,742
INFO 2026-06-04 21:19:45 MarkDuplicates Tracking 735320 as yet unmatched pairs. 21534 records in RAM.
INFO 2026-06-04 21:19:46 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:85,628,614
INFO 2026-06-04 21:19:46 MarkDuplicates Tracking 732393 as yet unmatched pairs. 18571 records in RAM.
INFO 2026-06-04 21:19:49 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr11:95,799,355
INFO 2026-06-04 21:19:49 MarkDuplicates Tracking 730396 as yet unmatched pairs. 16543 records in RAM.
INFO 2026-06-04 21:19:50 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:108,513,950
INFO 2026-06-04 21:19:50 MarkDuplicates Tracking 727768 as yet unmatched pairs. 13892 records in RAM.
INFO 2026-06-04 21:19:52 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:117,203,816
INFO 2026-06-04 21:19:52 MarkDuplicates Tracking 725346 as yet unmatched pairs. 11435 records in RAM.
INFO 2026-06-04 21:19:53 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:118,484,916
INFO 2026-06-04 21:19:53 MarkDuplicates Tracking 723027 as yet unmatched pairs. 9103 records in RAM.
INFO 2026-06-04 21:19:55 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:119,095,310
INFO 2026-06-04 21:19:55 MarkDuplicates Tracking 720355 as yet unmatched pairs. 6422 records in RAM.
INFO 2026-06-04 21:19:56 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:124,767,399
INFO 2026-06-04 21:19:56 MarkDuplicates Tracking 717960 as yet unmatched pairs. 4002 records in RAM.
INFO 2026-06-04 21:19:58 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:130,159,936
INFO 2026-06-04 21:19:58 MarkDuplicates Tracking 715524 as yet unmatched pairs. 1526 records in RAM.
INFO 2026-06-04 21:20:00 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr12:865,223
INFO 2026-06-04 21:20:00 MarkDuplicates Tracking 713214 as yet unmatched pairs. 87775 records in RAM.
INFO 2026-06-04 21:20:01 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr12:6,063,016
INFO 2026-06-04 21:20:01 MarkDuplicates Tracking 710710 as yet unmatched pairs. 85242 records in RAM.
INFO 2026-06-04 21:20:03 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,599,915
INFO 2026-06-04 21:20:03 MarkDuplicates Tracking 709445 as yet unmatched pairs. 83960 records in RAM.
INFO 2026-06-04 21:20:04 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr12:6,945,795
INFO 2026-06-04 21:20:04 MarkDuplicates Tracking 705888 as yet unmatched pairs. 80393 records in RAM.
INFO 2026-06-04 21:20:06 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,410
INFO 2026-06-04 21:20:06 MarkDuplicates Tracking 703372 as yet unmatched pairs. 77862 records in RAM.
INFO 2026-06-04 21:20:07 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr12:12,612,177
INFO 2026-06-04 21:20:07 MarkDuplicates Tracking 701069 as yet unmatched pairs. 75539 records in RAM.
INFO 2026-06-04 21:20:09 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:20,552,037
INFO 2026-06-04 21:20:09 MarkDuplicates Tracking 698644 as yet unmatched pairs. 73084 records in RAM.
INFO 2026-06-04 21:20:10 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr12:31,085,065
INFO 2026-06-04 21:20:10 MarkDuplicates Tracking 696486 as yet unmatched pairs. 70903 records in RAM.
INFO 2026-06-04 21:20:12 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr12:45,852,290
INFO 2026-06-04 21:20:12 MarkDuplicates Tracking 694228 as yet unmatched pairs. 68600 records in RAM.
INFO 2026-06-04 21:20:14 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr12:48,925,047
INFO 2026-06-04 21:20:14 MarkDuplicates Tracking 691656 as yet unmatched pairs. 66005 records in RAM.
INFO 2026-06-04 21:20:17 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr12:49,128,004
INFO 2026-06-04 21:20:17 MarkDuplicates Tracking 695690 as yet unmatched pairs. 70022 records in RAM.
INFO 2026-06-04 21:20:18 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,159
INFO 2026-06-04 21:20:18 MarkDuplicates Tracking 692320 as yet unmatched pairs. 66646 records in RAM.
INFO 2026-06-04 21:20:20 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:49,648,232
INFO 2026-06-04 21:20:20 MarkDuplicates Tracking 685638 as yet unmatched pairs. 59955 records in RAM.
INFO 2026-06-04 21:20:21 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,353
INFO 2026-06-04 21:20:21 MarkDuplicates Tracking 683862 as yet unmatched pairs. 58151 records in RAM.
INFO 2026-06-04 21:20:23 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:53,307,659
INFO 2026-06-04 21:20:23 MarkDuplicates Tracking 680058 as yet unmatched pairs. 54336 records in RAM.
INFO 2026-06-04 21:20:24 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,418
INFO 2026-06-04 21:20:24 MarkDuplicates Tracking 684069 as yet unmatched pairs. 58331 records in RAM.
INFO 2026-06-04 21:20:26 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:55,823,116
INFO 2026-06-04 21:20:26 MarkDuplicates Tracking 675675 as yet unmatched pairs. 49921 records in RAM.
INFO 2026-06-04 21:20:27 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:56,257,024
INFO 2026-06-04 21:20:27 MarkDuplicates Tracking 673464 as yet unmatched pairs. 47683 records in RAM.
INFO 2026-06-04 21:20:29 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,381
INFO 2026-06-04 21:20:29 MarkDuplicates Tracking 672759 as yet unmatched pairs. 46955 records in RAM.
INFO 2026-06-04 21:20:30 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:57,200,800
INFO 2026-06-04 21:20:30 MarkDuplicates Tracking 668580 as yet unmatched pairs. 42764 records in RAM.
INFO 2026-06-04 21:20:32 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:57,719,027
INFO 2026-06-04 21:20:32 MarkDuplicates Tracking 666094 as yet unmatched pairs. 40267 records in RAM.
INFO 2026-06-04 21:20:33 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:67,649,796
INFO 2026-06-04 21:20:33 MarkDuplicates Tracking 663596 as yet unmatched pairs. 37745 records in RAM.
INFO 2026-06-04 21:20:35 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:76,050,581
INFO 2026-06-04 21:20:35 MarkDuplicates Tracking 662593 as yet unmatched pairs. 36703 records in RAM.
INFO 2026-06-04 21:20:37 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:94,149,790
INFO 2026-06-04 21:20:37 MarkDuplicates Tracking 659024 as yet unmatched pairs. 33109 records in RAM.
INFO 2026-06-04 21:20:38 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:101,396,477
INFO 2026-06-04 21:20:38 MarkDuplicates Tracking 656707 as yet unmatched pairs. 30752 records in RAM.
INFO 2026-06-04 21:20:39 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:104,287,051
INFO 2026-06-04 21:20:39 MarkDuplicates Tracking 654256 as yet unmatched pairs. 28277 records in RAM.
INFO 2026-06-04 21:20:41 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr12:109,103,594
INFO 2026-06-04 21:20:41 MarkDuplicates Tracking 651846 as yet unmatched pairs. 25836 records in RAM.
INFO 2026-06-04 21:20:43 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:111,766,997
INFO 2026-06-04 21:20:43 MarkDuplicates Tracking 649113 as yet unmatched pairs. 23091 records in RAM.
INFO 2026-06-04 21:20:45 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr12:112,949,126
INFO 2026-06-04 21:20:45 MarkDuplicates Tracking 647534 as yet unmatched pairs. 21489 records in RAM.
INFO 2026-06-04 21:20:46 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:118,144,746
INFO 2026-06-04 21:20:46 MarkDuplicates Tracking 643700 as yet unmatched pairs. 17626 records in RAM.
INFO 2026-06-04 21:20:48 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:120,224,239
INFO 2026-06-04 21:20:48 MarkDuplicates Tracking 641185 as yet unmatched pairs. 15084 records in RAM.
INFO 2026-06-04 21:20:50 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr12:122,133,473
INFO 2026-06-04 21:20:50 MarkDuplicates Tracking 639596 as yet unmatched pairs. 13480 records in RAM.
INFO 2026-06-04 21:20:52 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:122,995,400
INFO 2026-06-04 21:20:52 MarkDuplicates Tracking 636406 as yet unmatched pairs. 10284 records in RAM.
INFO 2026-06-04 21:20:53 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:124,344,759
INFO 2026-06-04 21:20:53 MarkDuplicates Tracking 633756 as yet unmatched pairs. 7603 records in RAM.
INFO 2026-06-04 21:20:55 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:131,909,148
INFO 2026-06-04 21:20:55 MarkDuplicates Tracking 630935 as yet unmatched pairs. 4751 records in RAM.
INFO 2026-06-04 21:20:56 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:132,668,916
INFO 2026-06-04 21:20:56 MarkDuplicates Tracking 628497 as yet unmatched pairs. 2289 records in RAM.
INFO 2026-06-04 21:20:58 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr13:20,058,688
INFO 2026-06-04 21:20:58 MarkDuplicates Tracking 626762 as yet unmatched pairs. 27286 records in RAM.
INFO 2026-06-04 21:20:59 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr13:28,389,723
INFO 2026-06-04 21:20:59 MarkDuplicates Tracking 623152 as yet unmatched pairs. 23645 records in RAM.
INFO 2026-06-04 21:21:01 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,209
INFO 2026-06-04 21:21:01 MarkDuplicates Tracking 621240 as yet unmatched pairs. 21715 records in RAM.
INFO 2026-06-04 21:21:02 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr13:46,728,891
INFO 2026-06-04 21:21:02 MarkDuplicates Tracking 618613 as yet unmatched pairs. 19067 records in RAM.
INFO 2026-06-04 21:21:04 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr13:59,969,954
INFO 2026-06-04 21:21:04 MarkDuplicates Tracking 616261 as yet unmatched pairs. 16682 records in RAM.
INFO 2026-06-04 21:21:05 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr13:77,166,427
INFO 2026-06-04 21:21:05 MarkDuplicates Tracking 614432 as yet unmatched pairs. 14832 records in RAM.
INFO 2026-06-04 21:21:07 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr13:98,453,135
INFO 2026-06-04 21:21:07 MarkDuplicates Tracking 612693 as yet unmatched pairs. 13067 records in RAM.
INFO 2026-06-04 21:21:08 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr13:106,567,646
INFO 2026-06-04 21:21:08 MarkDuplicates Tracking 610053 as yet unmatched pairs. 10401 records in RAM.
INFO 2026-06-04 21:21:10 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr13:110,719,532
INFO 2026-06-04 21:21:10 MarkDuplicates Tracking 605987 as yet unmatched pairs. 6259 records in RAM.
INFO 2026-06-04 21:21:11 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr13:113,495,594
INFO 2026-06-04 21:21:11 MarkDuplicates Tracking 603261 as yet unmatched pairs. 3497 records in RAM.
INFO 2026-06-04 21:21:13 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr13:114,132,441
INFO 2026-06-04 21:21:13 MarkDuplicates Tracking 600192 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-04 21:21:15 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr14:21,386,117
INFO 2026-06-04 21:21:15 MarkDuplicates Tracking 597769 as yet unmatched pairs. 58090 records in RAM.
INFO 2026-06-04 21:21:17 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr14:23,079,028
INFO 2026-06-04 21:21:17 MarkDuplicates Tracking 595362 as yet unmatched pairs. 55672 records in RAM.
INFO 2026-06-04 21:21:19 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,732
INFO 2026-06-04 21:21:19 MarkDuplicates Tracking 592809 as yet unmatched pairs. 53101 records in RAM.
INFO 2026-06-04 21:21:21 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr14:26,745,025
INFO 2026-06-04 21:21:21 MarkDuplicates Tracking 589767 as yet unmatched pairs. 50047 records in RAM.
INFO 2026-06-04 21:21:23 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr14:36,299,075
INFO 2026-06-04 21:21:23 MarkDuplicates Tracking 587881 as yet unmatched pairs. 48152 records in RAM.
INFO 2026-06-04 21:21:24 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr14:49,825,870
INFO 2026-06-04 21:21:24 MarkDuplicates Tracking 585158 as yet unmatched pairs. 45375 records in RAM.
INFO 2026-06-04 21:21:26 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:55,063,097
INFO 2026-06-04 21:21:26 MarkDuplicates Tracking 582846 as yet unmatched pairs. 43005 records in RAM.
INFO 2026-06-04 21:21:27 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr14:61,740,868
INFO 2026-06-04 21:21:27 MarkDuplicates Tracking 580827 as yet unmatched pairs. 40969 records in RAM.
INFO 2026-06-04 21:21:29 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr14:64,126,596
INFO 2026-06-04 21:21:29 MarkDuplicates Tracking 579288 as yet unmatched pairs. 39402 records in RAM.
INFO 2026-06-04 21:21:30 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:65,077,371
INFO 2026-06-04 21:21:30 MarkDuplicates Tracking 575851 as yet unmatched pairs. 35949 records in RAM.
INFO 2026-06-04 21:21:32 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr14:70,732,882
INFO 2026-06-04 21:21:32 MarkDuplicates Tracking 573318 as yet unmatched pairs. 33386 records in RAM.
INFO 2026-06-04 21:21:33 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:74,296,372
INFO 2026-06-04 21:21:33 MarkDuplicates Tracking 570787 as yet unmatched pairs. 30828 records in RAM.
INFO 2026-06-04 21:21:35 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr14:75,461,506
INFO 2026-06-04 21:21:35 MarkDuplicates Tracking 568351 as yet unmatched pairs. 28369 records in RAM.
INFO 2026-06-04 21:21:36 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:88,479,916
INFO 2026-06-04 21:21:36 MarkDuplicates Tracking 565579 as yet unmatched pairs. 25570 records in RAM.
INFO 2026-06-04 21:21:38 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:92,135,476
INFO 2026-06-04 21:21:38 MarkDuplicates Tracking 563132 as yet unmatched pairs. 23095 records in RAM.
INFO 2026-06-04 21:21:39 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr14:95,710,105
INFO 2026-06-04 21:21:39 MarkDuplicates Tracking 561436 as yet unmatched pairs. 21373 records in RAM.
INFO 2026-06-04 21:21:41 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr14:100,529,864
INFO 2026-06-04 21:21:41 MarkDuplicates Tracking 557966 as yet unmatched pairs. 17863 records in RAM.
INFO 2026-06-04 21:21:42 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr14:102,083,568
INFO 2026-06-04 21:21:42 MarkDuplicates Tracking 556364 as yet unmatched pairs. 16239 records in RAM.
INFO 2026-06-04 21:21:44 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr14:104,152,143
INFO 2026-06-04 21:21:44 MarkDuplicates Tracking 552858 as yet unmatched pairs. 12708 records in RAM.
INFO 2026-06-04 21:21:45 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr14:104,801,937
INFO 2026-06-04 21:21:45 MarkDuplicates Tracking 549575 as yet unmatched pairs. 9404 records in RAM.
INFO 2026-06-04 21:21:47 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,130
INFO 2026-06-04 21:21:47 MarkDuplicates Tracking 547832 as yet unmatched pairs. 7644 records in RAM.
INFO 2026-06-04 21:21:49 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,273
INFO 2026-06-04 21:21:49 MarkDuplicates Tracking 549231 as yet unmatched pairs. 9038 records in RAM.
INFO 2026-06-04 21:21:52 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr14:105,769,245
INFO 2026-06-04 21:21:52 MarkDuplicates Tracking 544120 as yet unmatched pairs. 3917 records in RAM.
INFO 2026-06-04 21:21:53 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,856,125
INFO 2026-06-04 21:21:53 MarkDuplicates Tracking 541568 as yet unmatched pairs. 1355 records in RAM.
INFO 2026-06-04 21:21:55 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr15:28,202,480
INFO 2026-06-04 21:21:55 MarkDuplicates Tracking 538816 as yet unmatched pairs. 34008 records in RAM.
INFO 2026-06-04 21:21:56 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr15:32,637,783
INFO 2026-06-04 21:21:56 MarkDuplicates Tracking 536998 as yet unmatched pairs. 32178 records in RAM.
INFO 2026-06-04 21:21:58 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:40,266,332
INFO 2026-06-04 21:21:58 MarkDuplicates Tracking 535015 as yet unmatched pairs. 30169 records in RAM.
INFO 2026-06-04 21:21:59 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr15:42,160,775
INFO 2026-06-04 21:21:59 MarkDuplicates Tracking 532708 as yet unmatched pairs. 27849 records in RAM.
INFO 2026-06-04 21:22:00 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:43,632,710
INFO 2026-06-04 21:22:00 MarkDuplicates Tracking 530832 as yet unmatched pairs. 25964 records in RAM.
INFO 2026-06-04 21:22:02 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr15:48,445,441
INFO 2026-06-04 21:22:02 MarkDuplicates Tracking 527907 as yet unmatched pairs. 23028 records in RAM.
INFO 2026-06-04 21:22:04 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr15:56,095,560
INFO 2026-06-04 21:22:04 MarkDuplicates Tracking 525698 as yet unmatched pairs. 20788 records in RAM.
INFO 2026-06-04 21:22:05 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr15:62,953,883
INFO 2026-06-04 21:22:05 MarkDuplicates Tracking 523096 as yet unmatched pairs. 18169 records in RAM.
INFO 2026-06-04 21:22:07 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:65,887,749
INFO 2026-06-04 21:22:07 MarkDuplicates Tracking 520658 as yet unmatched pairs. 15713 records in RAM.
INFO 2026-06-04 21:22:08 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr15:72,217,444
INFO 2026-06-04 21:22:08 MarkDuplicates Tracking 518276 as yet unmatched pairs. 13313 records in RAM.
INFO 2026-06-04 21:22:09 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr15:74,929,132
INFO 2026-06-04 21:22:09 MarkDuplicates Tracking 515637 as yet unmatched pairs. 10647 records in RAM.
INFO 2026-06-04 21:22:11 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr15:78,892,312
INFO 2026-06-04 21:22:11 MarkDuplicates Tracking 513735 as yet unmatched pairs. 8727 records in RAM.
INFO 2026-06-04 21:22:12 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr15:84,687,642
INFO 2026-06-04 21:22:12 MarkDuplicates Tracking 511226 as yet unmatched pairs. 6210 records in RAM.
INFO 2026-06-04 21:22:14 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:90,201,547
INFO 2026-06-04 21:22:14 MarkDuplicates Tracking 508356 as yet unmatched pairs. 3323 records in RAM.
INFO 2026-06-04 21:22:15 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr15:100,924,667
INFO 2026-06-04 21:22:15 MarkDuplicates Tracking 505825 as yet unmatched pairs. 773 records in RAM.
INFO 2026-06-04 21:22:18 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr16:547,820
INFO 2026-06-04 21:22:18 MarkDuplicates Tracking 503254 as yet unmatched pairs. 77844 records in RAM.
INFO 2026-06-04 21:22:20 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr16:1,499,273
INFO 2026-06-04 21:22:20 MarkDuplicates Tracking 500169 as yet unmatched pairs. 74741 records in RAM.
INFO 2026-06-04 21:22:22 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:2,090,573
INFO 2026-06-04 21:22:22 MarkDuplicates Tracking 498086 as yet unmatched pairs. 72637 records in RAM.
INFO 2026-06-04 21:22:23 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,165,892
INFO 2026-06-04 21:22:23 MarkDuplicates Tracking 493912 as yet unmatched pairs. 68456 records in RAM.
INFO 2026-06-04 21:22:25 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,814
INFO 2026-06-04 21:22:25 MarkDuplicates Tracking 492380 as yet unmatched pairs. 66915 records in RAM.
INFO 2026-06-04 21:22:27 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:3,115,408
INFO 2026-06-04 21:22:27 MarkDuplicates Tracking 488349 as yet unmatched pairs. 62879 records in RAM.
INFO 2026-06-04 21:22:28 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:4,652,016
INFO 2026-06-04 21:22:28 MarkDuplicates Tracking 485922 as yet unmatched pairs. 60440 records in RAM.
INFO 2026-06-04 21:22:30 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:10,907,205
INFO 2026-06-04 21:22:30 MarkDuplicates Tracking 483667 as yet unmatched pairs. 58146 records in RAM.
INFO 2026-06-04 21:22:31 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:14,644,351
INFO 2026-06-04 21:22:31 MarkDuplicates Tracking 480872 as yet unmatched pairs. 55332 records in RAM.
INFO 2026-06-04 21:22:33 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:14,941,902
INFO 2026-06-04 21:22:33 MarkDuplicates Tracking 479826 as yet unmatched pairs. 54281 records in RAM.
INFO 2026-06-04 21:22:34 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr16:15,884,105
INFO 2026-06-04 21:22:34 MarkDuplicates Tracking 477738 as yet unmatched pairs. 52186 records in RAM.
INFO 2026-06-04 21:22:35 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:16,331,859
INFO 2026-06-04 21:22:35 MarkDuplicates Tracking 477609 as yet unmatched pairs. 52048 records in RAM.
INFO 2026-06-04 21:22:36 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,750
INFO 2026-06-04 21:22:36 MarkDuplicates Tracking 477075 as yet unmatched pairs. 51513 records in RAM.
INFO 2026-06-04 21:22:37 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:18,358,159
INFO 2026-06-04 21:22:37 MarkDuplicates Tracking 476067 as yet unmatched pairs. 50498 records in RAM.
INFO 2026-06-04 21:22:38 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:18,424,324
INFO 2026-06-04 21:22:38 MarkDuplicates Tracking 473735 as yet unmatched pairs. 48159 records in RAM.
INFO 2026-06-04 21:22:40 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,336
INFO 2026-06-04 21:22:40 MarkDuplicates Tracking 471774 as yet unmatched pairs. 46189 records in RAM.
INFO 2026-06-04 21:22:41 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr16:21,447,985
INFO 2026-06-04 21:22:41 MarkDuplicates Tracking 471144 as yet unmatched pairs. 45553 records in RAM.
INFO 2026-06-04 21:22:42 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,609
INFO 2026-06-04 21:22:42 MarkDuplicates Tracking 471837 as yet unmatched pairs. 46243 records in RAM.
INFO 2026-06-04 21:22:44 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr16:22,527,860
INFO 2026-06-04 21:22:44 MarkDuplicates Tracking 469431 as yet unmatched pairs. 43833 records in RAM.
INFO 2026-06-04 21:22:45 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:23,069,295
INFO 2026-06-04 21:22:45 MarkDuplicates Tracking 468867 as yet unmatched pairs. 43266 records in RAM.
INFO 2026-06-04 21:22:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr16:27,495,259
INFO 2026-06-04 21:22:46 MarkDuplicates Tracking 466429 as yet unmatched pairs. 40801 records in RAM.
INFO 2026-06-04 21:22:48 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:28,834,386
INFO 2026-06-04 21:22:48 MarkDuplicates Tracking 465005 as yet unmatched pairs. 39366 records in RAM.
INFO 2026-06-04 21:22:50 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:29,390,248
INFO 2026-06-04 21:22:50 MarkDuplicates Tracking 463773 as yet unmatched pairs. 38132 records in RAM.
INFO 2026-06-04 21:22:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:29,553,830
INFO 2026-06-04 21:22:51 MarkDuplicates Tracking 462068 as yet unmatched pairs. 36426 records in RAM.
INFO 2026-06-04 21:22:53 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr16:30,082,502
INFO 2026-06-04 21:22:53 MarkDuplicates Tracking 459411 as yet unmatched pairs. 33766 records in RAM.
INFO 2026-06-04 21:22:54 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,240,146
INFO 2026-06-04 21:22:54 MarkDuplicates Tracking 457747 as yet unmatched pairs. 32097 records in RAM.
INFO 2026-06-04 21:22:56 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:30,736,326
INFO 2026-06-04 21:22:56 MarkDuplicates Tracking 455932 as yet unmatched pairs. 30258 records in RAM.
INFO 2026-06-04 21:22:57 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:31,188,313
INFO 2026-06-04 21:22:57 MarkDuplicates Tracking 458076 as yet unmatched pairs. 32400 records in RAM.
INFO 2026-06-04 21:22:59 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:48,543,064
INFO 2026-06-04 21:22:59 MarkDuplicates Tracking 450314 as yet unmatched pairs. 24623 records in RAM.
INFO 2026-06-04 21:23:00 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:56,886,423
INFO 2026-06-04 21:23:00 MarkDuplicates Tracking 447602 as yet unmatched pairs. 21887 records in RAM.
INFO 2026-06-04 21:23:02 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:66,566,575
INFO 2026-06-04 21:23:02 MarkDuplicates Tracking 445191 as yet unmatched pairs. 19461 records in RAM.
INFO 2026-06-04 21:23:03 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:67,945,127
INFO 2026-06-04 21:23:03 MarkDuplicates Tracking 442386 as yet unmatched pairs. 16648 records in RAM.
INFO 2026-06-04 21:23:05 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:70,252,835
INFO 2026-06-04 21:23:05 MarkDuplicates Tracking 439824 as yet unmatched pairs. 14074 records in RAM.
INFO 2026-06-04 21:23:06 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:72,889,772
INFO 2026-06-04 21:23:06 MarkDuplicates Tracking 437453 as yet unmatched pairs. 11689 records in RAM.
INFO 2026-06-04 21:23:07 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:81,939,936
INFO 2026-06-04 21:23:07 MarkDuplicates Tracking 434501 as yet unmatched pairs. 8706 records in RAM.
INFO 2026-06-04 21:23:09 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:87,708,015
INFO 2026-06-04 21:23:09 MarkDuplicates Tracking 431660 as yet unmatched pairs. 5844 records in RAM.
INFO 2026-06-04 21:23:11 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:89,282,465
INFO 2026-06-04 21:23:11 MarkDuplicates Tracking 429265 as yet unmatched pairs. 3439 records in RAM.
INFO 2026-06-04 21:23:13 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr17:213,905
INFO 2026-06-04 21:23:13 MarkDuplicates Tracking 426368 as yet unmatched pairs. 115524 records in RAM.
INFO 2026-06-04 21:23:14 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,212
INFO 2026-06-04 21:23:14 MarkDuplicates Tracking 423404 as yet unmatched pairs. 112555 records in RAM.
INFO 2026-06-04 21:23:16 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr17:3,947,410
INFO 2026-06-04 21:23:16 MarkDuplicates Tracking 420587 as yet unmatched pairs. 109723 records in RAM.
INFO 2026-06-04 21:23:19 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr17:5,183,941
INFO 2026-06-04 21:23:19 MarkDuplicates Tracking 417731 as yet unmatched pairs. 106853 records in RAM.
INFO 2026-06-04 21:23:20 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,389,834
INFO 2026-06-04 21:23:20 MarkDuplicates Tracking 415074 as yet unmatched pairs. 104187 records in RAM.
INFO 2026-06-04 21:23:22 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr17:7,851,731
INFO 2026-06-04 21:23:22 MarkDuplicates Tracking 412910 as yet unmatched pairs. 102016 records in RAM.
INFO 2026-06-04 21:23:24 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:14,076,983
INFO 2026-06-04 21:23:24 MarkDuplicates Tracking 410405 as yet unmatched pairs. 99499 records in RAM.
INFO 2026-06-04 21:23:25 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:17,509,503
INFO 2026-06-04 21:23:25 MarkDuplicates Tracking 407770 as yet unmatched pairs. 96858 records in RAM.
INFO 2026-06-04 21:23:26 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:21,007,894
INFO 2026-06-04 21:23:26 MarkDuplicates Tracking 405426 as yet unmatched pairs. 94508 records in RAM.
INFO 2026-06-04 21:23:28 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:28,655,354
INFO 2026-06-04 21:23:28 MarkDuplicates Tracking 402640 as yet unmatched pairs. 91712 records in RAM.
INFO 2026-06-04 21:23:30 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:29,562,578
INFO 2026-06-04 21:23:30 MarkDuplicates Tracking 400197 as yet unmatched pairs. 89256 records in RAM.
INFO 2026-06-04 21:23:31 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:31,517,854
INFO 2026-06-04 21:23:31 MarkDuplicates Tracking 397585 as yet unmatched pairs. 86636 records in RAM.
INFO 2026-06-04 21:23:33 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:35,440,588
INFO 2026-06-04 21:23:33 MarkDuplicates Tracking 397285 as yet unmatched pairs. 86328 records in RAM.
INFO 2026-06-04 21:23:34 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:36,105,237
INFO 2026-06-04 21:23:34 MarkDuplicates Tracking 392900 as yet unmatched pairs. 81936 records in RAM.
INFO 2026-06-04 21:23:35 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:38,010,959
INFO 2026-06-04 21:23:35 MarkDuplicates Tracking 391260 as yet unmatched pairs. 80281 records in RAM.
INFO 2026-06-04 21:23:37 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,124
INFO 2026-06-04 21:23:37 MarkDuplicates Tracking 392068 as yet unmatched pairs. 81079 records in RAM.
INFO 2026-06-04 21:23:38 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:39,766,454
INFO 2026-06-04 21:23:38 MarkDuplicates Tracking 386893 as yet unmatched pairs. 75899 records in RAM.
INFO 2026-06-04 21:23:40 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:40,630,913
INFO 2026-06-04 21:23:40 MarkDuplicates Tracking 384621 as yet unmatched pairs. 73617 records in RAM.
INFO 2026-06-04 21:23:42 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:42,295,662
INFO 2026-06-04 21:23:42 MarkDuplicates Tracking 381433 as yet unmatched pairs. 70426 records in RAM.
INFO 2026-06-04 21:23:44 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:43,115,737
INFO 2026-06-04 21:23:44 MarkDuplicates Tracking 378704 as yet unmatched pairs. 67687 records in RAM.
INFO 2026-06-04 21:23:46 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr17:44,398,792
INFO 2026-06-04 21:23:46 MarkDuplicates Tracking 376406 as yet unmatched pairs. 65379 records in RAM.
INFO 2026-06-04 21:23:48 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:45,514,610
INFO 2026-06-04 21:23:48 MarkDuplicates Tracking 374941 as yet unmatched pairs. 63912 records in RAM.
INFO 2026-06-04 21:23:49 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr17:46,513,317
INFO 2026-06-04 21:23:49 MarkDuplicates Tracking 371964 as yet unmatched pairs. 60929 records in RAM.
INFO 2026-06-04 21:23:50 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:47,923,050
INFO 2026-06-04 21:23:50 MarkDuplicates Tracking 370343 as yet unmatched pairs. 59301 records in RAM.
INFO 2026-06-04 21:23:52 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,150,253
INFO 2026-06-04 21:23:52 MarkDuplicates Tracking 367539 as yet unmatched pairs. 56486 records in RAM.
INFO 2026-06-04 21:23:54 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,478
INFO 2026-06-04 21:23:54 MarkDuplicates Tracking 372075 as yet unmatched pairs. 61015 records in RAM.
INFO 2026-06-04 21:23:55 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,135
INFO 2026-06-04 21:23:55 MarkDuplicates Tracking 381600 as yet unmatched pairs. 70533 records in RAM.
INFO 2026-06-04 21:23:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,748
INFO 2026-06-04 21:23:57 MarkDuplicates Tracking 374987 as yet unmatched pairs. 63914 records in RAM.
INFO 2026-06-04 21:23:58 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:51,268,853
INFO 2026-06-04 21:23:58 MarkDuplicates Tracking 356889 as yet unmatched pairs. 45810 records in RAM.
INFO 2026-06-04 21:24:00 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:58,980,645
INFO 2026-06-04 21:24:00 MarkDuplicates Tracking 354268 as yet unmatched pairs. 43164 records in RAM.
INFO 2026-06-04 21:24:01 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:60,451,961
INFO 2026-06-04 21:24:01 MarkDuplicates Tracking 351930 as yet unmatched pairs. 40819 records in RAM.
INFO 2026-06-04 21:24:03 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:63,819,975
INFO 2026-06-04 21:24:03 MarkDuplicates Tracking 349460 as yet unmatched pairs. 38328 records in RAM.
INFO 2026-06-04 21:24:04 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:65,535,696
INFO 2026-06-04 21:24:04 MarkDuplicates Tracking 347042 as yet unmatched pairs. 35904 records in RAM.
INFO 2026-06-04 21:24:06 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:68,524,934
INFO 2026-06-04 21:24:06 MarkDuplicates Tracking 346021 as yet unmatched pairs. 34873 records in RAM.
INFO 2026-06-04 21:24:07 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:75,136,137
INFO 2026-06-04 21:24:07 MarkDuplicates Tracking 342510 as yet unmatched pairs. 31349 records in RAM.
INFO 2026-06-04 21:24:09 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:75,779,046
INFO 2026-06-04 21:24:09 MarkDuplicates Tracking 340122 as yet unmatched pairs. 28950 records in RAM.
INFO 2026-06-04 21:25:09 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 60s. Last read position: chr17:76,736,309
INFO 2026-06-04 21:25:09 MarkDuplicates Tracking 337913 as yet unmatched pairs. 26735 records in RAM.
INFO 2026-06-04 21:26:18 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 68s. Last read position: chr17:78,392,610
INFO 2026-06-04 21:26:18 MarkDuplicates Tracking 334129 as yet unmatched pairs. 22949 records in RAM.
INFO 2026-06-04 21:26:19 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:80,295,680
INFO 2026-06-04 21:26:19 MarkDuplicates Tracking 331452 as yet unmatched pairs. 20267 records in RAM.
INFO 2026-06-04 21:26:21 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:81,127,606
INFO 2026-06-04 21:26:21 MarkDuplicates Tracking 328272 as yet unmatched pairs. 17070 records in RAM.
INFO 2026-06-04 21:26:22 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr17:81,686,998
INFO 2026-06-04 21:26:22 MarkDuplicates Tracking 325967 as yet unmatched pairs. 14753 records in RAM.
INFO 2026-06-04 21:26:24 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,273
INFO 2026-06-04 21:26:24 MarkDuplicates Tracking 322446 as yet unmatched pairs. 11229 records in RAM.
INFO 2026-06-04 21:26:25 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr17:82,807,623
INFO 2026-06-04 21:26:25 MarkDuplicates Tracking 327917 as yet unmatched pairs. 16683 records in RAM.
INFO 2026-06-04 21:26:27 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr17:82,870,262
INFO 2026-06-04 21:26:27 MarkDuplicates Tracking 331582 as yet unmatched pairs. 20325 records in RAM.
INFO 2026-06-04 21:26:29 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:82,927,189
INFO 2026-06-04 21:26:29 MarkDuplicates Tracking 317342 as yet unmatched pairs. 6071 records in RAM.
INFO 2026-06-04 21:26:30 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr18:2,700,576
INFO 2026-06-04 21:26:30 MarkDuplicates Tracking 311520 as yet unmatched pairs. 18708 records in RAM.
INFO 2026-06-04 21:26:32 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr18:10,699,047
INFO 2026-06-04 21:26:32 MarkDuplicates Tracking 308368 as yet unmatched pairs. 15539 records in RAM.
INFO 2026-06-04 21:26:34 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr18:23,520,178
INFO 2026-06-04 21:26:34 MarkDuplicates Tracking 305708 as yet unmatched pairs. 12858 records in RAM.
INFO 2026-06-04 21:26:36 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr18:34,093,595
INFO 2026-06-04 21:26:36 MarkDuplicates Tracking 303583 as yet unmatched pairs. 10725 records in RAM.
INFO 2026-06-04 21:26:38 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr18:47,029,605
INFO 2026-06-04 21:26:38 MarkDuplicates Tracking 301585 as yet unmatched pairs. 8707 records in RAM.
INFO 2026-06-04 21:26:40 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr18:57,436,340
INFO 2026-06-04 21:26:40 MarkDuplicates Tracking 298624 as yet unmatched pairs. 5729 records in RAM.
INFO 2026-06-04 21:26:42 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 2s. Last read position: chr18:63,362,802
INFO 2026-06-04 21:26:42 MarkDuplicates Tracking 295932 as yet unmatched pairs. 3020 records in RAM.
INFO 2026-06-04 21:26:43 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr18:79,977,655
INFO 2026-06-04 21:26:43 MarkDuplicates Tracking 293936 as yet unmatched pairs. 999 records in RAM.
INFO 2026-06-04 21:26:46 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 2s. Last read position: chr19:1,011,457
INFO 2026-06-04 21:26:46 MarkDuplicates Tracking 291548 as yet unmatched pairs. 137343 records in RAM.
INFO 2026-06-04 21:26:47 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr19:1,271,291
INFO 2026-06-04 21:26:47 MarkDuplicates Tracking 287273 as yet unmatched pairs. 133063 records in RAM.
INFO 2026-06-04 21:26:49 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr19:1,827,745
INFO 2026-06-04 21:26:49 MarkDuplicates Tracking 283984 as yet unmatched pairs. 129767 records in RAM.
INFO 2026-06-04 21:26:50 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr19:2,269,558
INFO 2026-06-04 21:26:50 MarkDuplicates Tracking 281241 as yet unmatched pairs. 127021 records in RAM.
INFO 2026-06-04 21:26:52 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr19:3,192,503
INFO 2026-06-04 21:26:52 MarkDuplicates Tracking 277663 as yet unmatched pairs. 123432 records in RAM.
INFO 2026-06-04 21:26:54 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr19:4,409,462
INFO 2026-06-04 21:26:54 MarkDuplicates Tracking 275092 as yet unmatched pairs. 120855 records in RAM.
INFO 2026-06-04 21:26:55 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr19:5,258,038
INFO 2026-06-04 21:26:55 MarkDuplicates Tracking 272491 as yet unmatched pairs. 118247 records in RAM.
INFO 2026-06-04 21:26:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr19:6,392,997
INFO 2026-06-04 21:26:56 MarkDuplicates Tracking 268621 as yet unmatched pairs. 114371 records in RAM.
INFO 2026-06-04 21:26:58 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr19:7,536,484
INFO 2026-06-04 21:26:58 MarkDuplicates Tracking 266061 as yet unmatched pairs. 111804 records in RAM.
INFO 2026-06-04 21:27:00 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr19:8,095,476
INFO 2026-06-04 21:27:00 MarkDuplicates Tracking 263255 as yet unmatched pairs. 108994 records in RAM.
INFO 2026-06-04 21:27:01 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr19:8,934,937
INFO 2026-06-04 21:27:01 MarkDuplicates Tracking 260158 as yet unmatched pairs. 105893 records in RAM.
INFO 2026-06-04 21:27:03 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr19:9,614,032
INFO 2026-06-04 21:27:03 MarkDuplicates Tracking 258212 as yet unmatched pairs. 103946 records in RAM.
INFO 2026-06-04 21:27:06 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr19:10,361,557
INFO 2026-06-04 21:27:06 MarkDuplicates Tracking 255587 as yet unmatched pairs. 101316 records in RAM.
INFO 2026-06-04 21:27:08 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr19:10,985,386
INFO 2026-06-04 21:27:08 MarkDuplicates Tracking 253082 as yet unmatched pairs. 98807 records in RAM.
INFO 2026-06-04 21:27:09 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr19:11,925,309
INFO 2026-06-04 21:27:09 MarkDuplicates Tracking 250311 as yet unmatched pairs. 96031 records in RAM.
INFO 2026-06-04 21:27:11 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr19:12,928,440
INFO 2026-06-04 21:27:11 MarkDuplicates Tracking 247484 as yet unmatched pairs. 93197 records in RAM.
INFO 2026-06-04 21:27:12 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:13,298,711
INFO 2026-06-04 21:27:12 MarkDuplicates Tracking 245696 as yet unmatched pairs. 91407 records in RAM.
INFO 2026-06-04 21:27:14 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr19:14,106,844
INFO 2026-06-04 21:27:14 MarkDuplicates Tracking 242507 as yet unmatched pairs. 88209 records in RAM.
INFO 2026-06-04 21:27:15 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr19:15,119,483
INFO 2026-06-04 21:27:15 MarkDuplicates Tracking 238883 as yet unmatched pairs. 84582 records in RAM.
INFO 2026-06-04 21:27:17 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,433
INFO 2026-06-04 21:27:17 MarkDuplicates Tracking 237963 as yet unmatched pairs. 83659 records in RAM.
INFO 2026-06-04 21:27:18 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr19:16,523,227
INFO 2026-06-04 21:27:18 MarkDuplicates Tracking 233496 as yet unmatched pairs. 79190 records in RAM.
INFO 2026-06-04 21:27:20 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr19:17,527,302
INFO 2026-06-04 21:27:20 MarkDuplicates Tracking 231663 as yet unmatched pairs. 77356 records in RAM.
INFO 2026-06-04 21:27:21 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:18,173,826
INFO 2026-06-04 21:27:21 MarkDuplicates Tracking 227752 as yet unmatched pairs. 73440 records in RAM.
INFO 2026-06-04 21:27:23 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:18,683,778
INFO 2026-06-04 21:27:23 MarkDuplicates Tracking 226127 as yet unmatched pairs. 71806 records in RAM.
INFO 2026-06-04 21:27:24 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:19,498,560
INFO 2026-06-04 21:27:24 MarkDuplicates Tracking 221880 as yet unmatched pairs. 67547 records in RAM.
INFO 2026-06-04 21:27:26 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:32,966,406
INFO 2026-06-04 21:27:26 MarkDuplicates Tracking 219298 as yet unmatched pairs. 64958 records in RAM.
INFO 2026-06-04 21:27:27 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:35,330,194
INFO 2026-06-04 21:27:27 MarkDuplicates Tracking 216107 as yet unmatched pairs. 61757 records in RAM.
INFO 2026-06-04 21:27:29 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:35,871,338
INFO 2026-06-04 21:27:29 MarkDuplicates Tracking 213313 as yet unmatched pairs. 58961 records in RAM.
INFO 2026-06-04 21:27:30 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:38,119,762
INFO 2026-06-04 21:27:30 MarkDuplicates Tracking 210419 as yet unmatched pairs. 56058 records in RAM.
INFO 2026-06-04 21:27:33 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr19:39,169,746
INFO 2026-06-04 21:27:33 MarkDuplicates Tracking 207816 as yet unmatched pairs. 53454 records in RAM.
INFO 2026-06-04 21:27:35 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 2s. Last read position: chr19:39,829,943
INFO 2026-06-04 21:27:35 MarkDuplicates Tracking 204872 as yet unmatched pairs. 50507 records in RAM.
INFO 2026-06-04 21:27:36 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:40,725,339
INFO 2026-06-04 21:27:36 MarkDuplicates Tracking 202010 as yet unmatched pairs. 47643 records in RAM.
INFO 2026-06-04 21:27:38 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:41,879,254
INFO 2026-06-04 21:27:38 MarkDuplicates Tracking 199777 as yet unmatched pairs. 45407 records in RAM.
INFO 2026-06-04 21:27:39 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:42,271,826
INFO 2026-06-04 21:27:39 MarkDuplicates Tracking 196864 as yet unmatched pairs. 42491 records in RAM.
INFO 2026-06-04 21:27:41 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:42,294,045
INFO 2026-06-04 21:27:41 MarkDuplicates Tracking 194399 as yet unmatched pairs. 40025 records in RAM.
INFO 2026-06-04 21:27:42 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:44,106,757
INFO 2026-06-04 21:27:42 MarkDuplicates Tracking 191077 as yet unmatched pairs. 36696 records in RAM.
INFO 2026-06-04 21:27:44 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:45,472,713
INFO 2026-06-04 21:27:44 MarkDuplicates Tracking 188464 as yet unmatched pairs. 34072 records in RAM.
INFO 2026-06-04 21:27:46 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:46,674,448
INFO 2026-06-04 21:27:46 MarkDuplicates Tracking 185374 as yet unmatched pairs. 30982 records in RAM.
INFO 2026-06-04 21:27:47 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:47,746,966
INFO 2026-06-04 21:27:47 MarkDuplicates Tracking 183366 as yet unmatched pairs. 28970 records in RAM.
INFO 2026-06-04 21:27:49 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr19:48,702,980
INFO 2026-06-04 21:27:49 MarkDuplicates Tracking 179719 as yet unmatched pairs. 25323 records in RAM.
INFO 2026-06-04 21:27:51 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:49,468,876
INFO 2026-06-04 21:27:51 MarkDuplicates Tracking 177654 as yet unmatched pairs. 23251 records in RAM.
INFO 2026-06-04 21:27:52 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:49,652,619
INFO 2026-06-04 21:27:52 MarkDuplicates Tracking 174453 as yet unmatched pairs. 20046 records in RAM.
INFO 2026-06-04 21:27:54 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:50,009,297
INFO 2026-06-04 21:27:54 MarkDuplicates Tracking 171475 as yet unmatched pairs. 17067 records in RAM.
INFO 2026-06-04 21:27:55 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:52,155,475
INFO 2026-06-04 21:27:55 MarkDuplicates Tracking 168504 as yet unmatched pairs. 14090 records in RAM.
INFO 2026-06-04 21:27:57 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:54,155,317
INFO 2026-06-04 21:27:57 MarkDuplicates Tracking 166227 as yet unmatched pairs. 11807 records in RAM.
INFO 2026-06-04 21:27:59 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr19:55,141,255
INFO 2026-06-04 21:27:59 MarkDuplicates Tracking 163934 as yet unmatched pairs. 9511 records in RAM.
INFO 2026-06-04 21:28:01 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:55,645,071
INFO 2026-06-04 21:28:01 MarkDuplicates Tracking 160475 as yet unmatched pairs. 6050 records in RAM.
INFO 2026-06-04 21:28:03 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:57,808,767
INFO 2026-06-04 21:28:03 MarkDuplicates Tracking 158018 as yet unmatched pairs. 3590 records in RAM.
INFO 2026-06-04 21:28:04 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:58,548,861
INFO 2026-06-04 21:28:04 MarkDuplicates Tracking 156935 as yet unmatched pairs. 2506 records in RAM.
INFO 2026-06-04 21:28:06 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr20:3,164,464
INFO 2026-06-04 21:28:06 MarkDuplicates Tracking 152456 as yet unmatched pairs. 32916 records in RAM.
INFO 2026-06-04 21:28:08 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr20:15,933,305
INFO 2026-06-04 21:28:08 MarkDuplicates Tracking 149558 as yet unmatched pairs. 30011 records in RAM.
INFO 2026-06-04 21:28:09 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr20:25,300,764
INFO 2026-06-04 21:28:09 MarkDuplicates Tracking 146938 as yet unmatched pairs. 27386 records in RAM.
INFO 2026-06-04 21:28:11 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr20:33,851,059
INFO 2026-06-04 21:28:11 MarkDuplicates Tracking 144448 as yet unmatched pairs. 24889 records in RAM.
INFO 2026-06-04 21:28:13 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr20:35,632,192
INFO 2026-06-04 21:28:13 MarkDuplicates Tracking 141687 as yet unmatched pairs. 22121 records in RAM.
INFO 2026-06-04 21:28:14 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr20:37,518,926
INFO 2026-06-04 21:28:14 MarkDuplicates Tracking 139164 as yet unmatched pairs. 19594 records in RAM.
INFO 2026-06-04 21:28:15 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr20:43,463,227
INFO 2026-06-04 21:28:15 MarkDuplicates Tracking 136543 as yet unmatched pairs. 16966 records in RAM.
INFO 2026-06-04 21:28:17 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr20:45,969,553
INFO 2026-06-04 21:28:17 MarkDuplicates Tracking 133931 as yet unmatched pairs. 14350 records in RAM.
INFO 2026-06-04 21:28:19 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr20:49,874,760
INFO 2026-06-04 21:28:19 MarkDuplicates Tracking 131247 as yet unmatched pairs. 11657 records in RAM.
INFO 2026-06-04 21:28:21 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr20:58,669,362
INFO 2026-06-04 21:28:21 MarkDuplicates Tracking 128901 as yet unmatched pairs. 9298 records in RAM.
INFO 2026-06-04 21:28:22 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr20:62,312,239
INFO 2026-06-04 21:28:22 MarkDuplicates Tracking 125855 as yet unmatched pairs. 6251 records in RAM.
INFO 2026-06-04 21:28:24 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,802
INFO 2026-06-04 21:28:24 MarkDuplicates Tracking 123013 as yet unmatched pairs. 3406 records in RAM.
INFO 2026-06-04 21:28:25 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr21:5,027,978
INFO 2026-06-04 21:28:25 MarkDuplicates Tracking 119609 as yet unmatched pairs. 23005 records in RAM.
INFO 2026-06-04 21:28:26 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,218,000
INFO 2026-06-04 21:28:26 MarkDuplicates Tracking 117855 as yet unmatched pairs. 21243 records in RAM.
INFO 2026-06-04 21:28:27 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,441,973
INFO 2026-06-04 21:28:27 MarkDuplicates Tracking 117457 as yet unmatched pairs. 20838 records in RAM.
INFO 2026-06-04 21:28:29 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr21:26,844,251
INFO 2026-06-04 21:28:29 MarkDuplicates Tracking 115247 as yet unmatched pairs. 18624 records in RAM.
INFO 2026-06-04 21:28:30 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr21:33,549,965
INFO 2026-06-04 21:28:30 MarkDuplicates Tracking 113817 as yet unmatched pairs. 17184 records in RAM.
INFO 2026-06-04 21:28:32 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr21:37,018,117
INFO 2026-06-04 21:28:32 MarkDuplicates Tracking 110342 as yet unmatched pairs. 13707 records in RAM.
INFO 2026-06-04 21:28:33 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr21:41,344,490
INFO 2026-06-04 21:28:33 MarkDuplicates Tracking 107532 as yet unmatched pairs. 10895 records in RAM.
INFO 2026-06-04 21:28:34 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr21:43,687,993
INFO 2026-06-04 21:28:34 MarkDuplicates Tracking 104935 as yet unmatched pairs. 8295 records in RAM.
INFO 2026-06-04 21:28:36 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr21:45,455,736
INFO 2026-06-04 21:28:36 MarkDuplicates Tracking 103399 as yet unmatched pairs. 6756 records in RAM.
INFO 2026-06-04 21:28:38 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr21:46,126,191
INFO 2026-06-04 21:28:38 MarkDuplicates Tracking 100120 as yet unmatched pairs. 3475 records in RAM.
INFO 2026-06-04 21:28:39 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr22:17,541,852
INFO 2026-06-04 21:28:39 MarkDuplicates Tracking 96335 as yet unmatched pairs. 42211 records in RAM.
INFO 2026-06-04 21:28:41 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr22:19,963,732
INFO 2026-06-04 21:28:41 MarkDuplicates Tracking 93613 as yet unmatched pairs. 39488 records in RAM.
INFO 2026-06-04 21:28:42 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr22:21,546,334
INFO 2026-06-04 21:28:42 MarkDuplicates Tracking 90696 as yet unmatched pairs. 36568 records in RAM.
INFO 2026-06-04 21:28:44 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr22:23,399,606
INFO 2026-06-04 21:28:44 MarkDuplicates Tracking 87996 as yet unmatched pairs. 33867 records in RAM.
INFO 2026-06-04 21:28:45 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr22:26,347,777
INFO 2026-06-04 21:28:45 MarkDuplicates Tracking 86046 as yet unmatched pairs. 31917 records in RAM.
INFO 2026-06-04 21:28:47 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,336
INFO 2026-06-04 21:28:47 MarkDuplicates Tracking 83942 as yet unmatched pairs. 29807 records in RAM.
INFO 2026-06-04 21:28:49 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr22:30,890,894
INFO 2026-06-04 21:28:49 MarkDuplicates Tracking 80243 as yet unmatched pairs. 26107 records in RAM.
INFO 2026-06-04 21:28:51 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr22:35,400,473
INFO 2026-06-04 21:28:51 MarkDuplicates Tracking 78003 as yet unmatched pairs. 23866 records in RAM.
INFO 2026-06-04 21:28:52 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr22:36,523,895
INFO 2026-06-04 21:28:52 MarkDuplicates Tracking 75525 as yet unmatched pairs. 21387 records in RAM.
INFO 2026-06-04 21:28:54 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr22:38,074,929
INFO 2026-06-04 21:28:54 MarkDuplicates Tracking 72422 as yet unmatched pairs. 18284 records in RAM.
INFO 2026-06-04 21:28:55 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr22:39,133,966
INFO 2026-06-04 21:28:55 MarkDuplicates Tracking 70089 as yet unmatched pairs. 15951 records in RAM.
INFO 2026-06-04 21:28:57 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr22:41,177,837
INFO 2026-06-04 21:28:57 MarkDuplicates Tracking 67304 as yet unmatched pairs. 13157 records in RAM.
INFO 2026-06-04 21:28:59 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr22:42,067,221
INFO 2026-06-04 21:28:59 MarkDuplicates Tracking 64491 as yet unmatched pairs. 10342 records in RAM.
INFO 2026-06-04 21:29:00 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr22:45,574,420
INFO 2026-06-04 21:29:00 MarkDuplicates Tracking 61875 as yet unmatched pairs. 7726 records in RAM.
INFO 2026-06-04 21:29:02 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr22:50,240,254
INFO 2026-06-04 21:29:02 MarkDuplicates Tracking 59305 as yet unmatched pairs. 5151 records in RAM.
INFO 2026-06-04 21:29:04 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,811
INFO 2026-06-04 21:29:04 MarkDuplicates Tracking 57305 as yet unmatched pairs. 3149 records in RAM.
INFO 2026-06-04 21:29:06 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chrX:10,117,386
INFO 2026-06-04 21:29:06 MarkDuplicates Tracking 52964 as yet unmatched pairs. 46928 records in RAM.
INFO 2026-06-04 21:29:07 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chrX:20,234,775
INFO 2026-06-04 21:29:07 MarkDuplicates Tracking 50250 as yet unmatched pairs. 44205 records in RAM.
INFO 2026-06-04 21:29:09 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,983
INFO 2026-06-04 21:29:09 MarkDuplicates Tracking 48824 as yet unmatched pairs. 42779 records in RAM.
INFO 2026-06-04 21:29:10 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chrX:47,185,310
INFO 2026-06-04 21:29:10 MarkDuplicates Tracking 45595 as yet unmatched pairs. 39550 records in RAM.
INFO 2026-06-04 21:29:12 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chrX:48,893,763
INFO 2026-06-04 21:29:12 MarkDuplicates Tracking 42900 as yet unmatched pairs. 36854 records in RAM.
INFO 2026-06-04 21:29:14 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chrX:52,497,450
INFO 2026-06-04 21:29:14 MarkDuplicates Tracking 40581 as yet unmatched pairs. 34535 records in RAM.
INFO 2026-06-04 21:29:15 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,335
INFO 2026-06-04 21:29:15 MarkDuplicates Tracking 39069 as yet unmatched pairs. 33023 records in RAM.
INFO 2026-06-04 21:29:17 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chrX:56,564,898
INFO 2026-06-04 21:29:17 MarkDuplicates Tracking 35653 as yet unmatched pairs. 29607 records in RAM.
INFO 2026-06-04 21:29:18 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chrX:71,284,443
INFO 2026-06-04 21:29:18 MarkDuplicates Tracking 34025 as yet unmatched pairs. 27978 records in RAM.
INFO 2026-06-04 21:29:20 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chrX:72,275,676
INFO 2026-06-04 21:29:20 MarkDuplicates Tracking 30819 as yet unmatched pairs. 24772 records in RAM.
INFO 2026-06-04 21:29:21 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chrX:77,899,573
INFO 2026-06-04 21:29:21 MarkDuplicates Tracking 29114 as yet unmatched pairs. 23066 records in RAM.
INFO 2026-06-04 21:29:22 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chrX:103,357,677
INFO 2026-06-04 21:29:22 MarkDuplicates Tracking 26396 as yet unmatched pairs. 20348 records in RAM.
INFO 2026-06-04 21:29:24 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chrX:119,542,520
INFO 2026-06-04 21:29:24 MarkDuplicates Tracking 23916 as yet unmatched pairs. 17867 records in RAM.
INFO 2026-06-04 21:29:26 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chrX:130,013,631
INFO 2026-06-04 21:29:26 MarkDuplicates Tracking 22032 as yet unmatched pairs. 15983 records in RAM.
INFO 2026-06-04 21:29:27 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,073
INFO 2026-06-04 21:29:27 MarkDuplicates Tracking 21352 as yet unmatched pairs. 15303 records in RAM.
INFO 2026-06-04 21:29:28 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chrX:152,922,179
INFO 2026-06-04 21:29:28 MarkDuplicates Tracking 16938 as yet unmatched pairs. 10889 records in RAM.
INFO 2026-06-04 21:29:30 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chrX:153,909,153
INFO 2026-06-04 21:29:30 MarkDuplicates Tracking 14451 as yet unmatched pairs. 8402 records in RAM.
INFO 2026-06-04 21:29:31 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,879
INFO 2026-06-04 21:29:31 MarkDuplicates Tracking 11429 as yet unmatched pairs. 5378 records in RAM.
INFO 2026-06-04 21:29:33 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,461,547
INFO 2026-06-04 21:29:33 MarkDuplicates Tracking 8553 as yet unmatched pairs. 2502 records in RAM.
INFO 2026-06-04 21:29:34 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chrX:156,023,080
INFO 2026-06-04 21:29:34 MarkDuplicates Tracking 6143 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-04 21:29:36 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,280
INFO 2026-06-04 21:29:36 MarkDuplicates Tracking 2838 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-04 21:29:37 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,631
INFO 2026-06-04 21:29:37 MarkDuplicates Tracking 2561 as yet unmatched pairs. 2503 records in RAM.
INFO 2026-06-04 21:29:38 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,526
INFO 2026-06-04 21:29:38 MarkDuplicates Tracking 68 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-04 21:29:39 MarkDuplicates Read 629159054 records. 0 pairs never matched.
INFO 2026-06-04 21:30:20 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138936; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-04 21:30:20 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-04 21:30:23 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-04 21:30:23 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,700
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder Large duplicate set. size = 1330
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,829
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,919
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,894
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder Large duplicate set. size = 1879
INFO 2026-06-04 21:30:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,429
INFO 2026-06-04 21:31:11 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-04 21:31:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,106
INFO 2026-06-04 21:31:26 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-04 21:31:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-04 21:32:23 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-04 21:32:32 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792701272; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-04 21:32:32 MarkDuplicates Marking 234277791 records as duplicates.
INFO 2026-06-04 21:32:32 MarkDuplicates Found 11343008 optical duplicate clusters.
INFO 2026-06-04 21:32:32 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-04 21:32:49 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:23,695,826
INFO 2026-06-04 21:33:05 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:46,008,294
INFO 2026-06-04 21:33:22 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:145,995,948
INFO 2026-06-04 21:33:38 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:155,195,883
INFO 2026-06-04 21:33:54 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 16s. Last read position: chr1:186,322,387
INFO 2026-06-04 21:34:11 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr1:231,335,560
INFO 2026-06-04 21:34:28 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-04 21:34:44 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:12s. Time for last 10,000,000: 16s. Last read position: chr2:70,212,627
INFO 2026-06-04 21:35:01 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 17s. Last read position: chr2:131,516,931
INFO 2026-06-04 21:35:18 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:45s. Time for last 10,000,000: 16s. Last read position: chr2:207,976,784
INFO 2026-06-04 21:35:35 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 16s. Last read position: chr3:20,040,639
INFO 2026-06-04 21:35:52 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:19s. Time for last 10,000,000: 16s. Last read position: chr3:52,586,669
INFO 2026-06-04 21:36:08 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:36s. Time for last 10,000,000: 16s. Last read position: chr3:158,705,301
INFO 2026-06-04 21:36:25 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 16s. Last read position: chr4:42,444,573
INFO 2026-06-04 21:36:42 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 16s. Last read position: chr4:184,017,133
INFO 2026-06-04 21:36:59 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:26s. Time for last 10,000,000: 16s. Last read position: chr5:43,295,802
INFO 2026-06-04 21:37:15 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 16s. Last read position: chr5:140,537,443
INFO 2026-06-04 21:37:32 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:59s. Time for last 10,000,000: 16s. Last read position: chr5:176,651,790
INFO 2026-06-04 21:37:48 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:15s. Time for last 10,000,000: 16s. Last read position: chr6:28,908,984
INFO 2026-06-04 21:38:04 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:32s. Time for last 10,000,000: 16s. Last read position: chr6:42,269,472
INFO 2026-06-04 21:38:21 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:48s. Time for last 10,000,000: 16s. Last read position: chr6:151,353,613
INFO 2026-06-04 21:38:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:05s. Time for last 10,000,000: 16s. Last read position: chr7:37,271,877
INFO 2026-06-04 21:38:54 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:21s. Time for last 10,000,000: 16s. Last read position: chr7:94,425,184
INFO 2026-06-04 21:39:11 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 16s. Last read position: chr7:138,573,606
INFO 2026-06-04 21:39:27 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:55s. Time for last 10,000,000: 16s. Last read position: chr8:38,347,629
INFO 2026-06-04 21:39:44 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 16s. Last read position: chr8:142,543,396
INFO 2026-06-04 21:40:01 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 16s. Last read position: chr9:37,784,883
INFO 2026-06-04 21:40:17 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:45s. Time for last 10,000,000: 16s. Last read position: chr9:124,860,214
INFO 2026-06-04 21:40:34 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 16s. Last read position: chr9:137,022,400
INFO 2026-06-04 21:40:50 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 16s. Last read position: chr10:68,646,531
INFO 2026-06-04 21:41:07 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:34s. Time for last 10,000,000: 16s. Last read position: chr10:125,740,463
INFO 2026-06-04 21:41:24 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 16s. Last read position: chr11:46,397,720
INFO 2026-06-04 21:41:40 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 16s. Last read position: chr11:66,624,937
INFO 2026-06-04 21:41:56 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 16s. Last read position: chr11:118,484,916
INFO 2026-06-04 21:42:13 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 16s. Last read position: chr12:20,552,037
INFO 2026-06-04 21:42:29 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 16s. Last read position: chr12:55,823,116
INFO 2026-06-04 21:42:46 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:13s. Time for last 10,000,000: 16s. Last read position: chr12:109,103,594
INFO 2026-06-04 21:43:02 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 16s. Last read position: chr13:20,058,688
INFO 2026-06-04 21:43:19 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:46s. Time for last 10,000,000: 16s. Last read position: chr13:114,132,441
INFO 2026-06-04 21:43:35 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 16s. Last read position: chr14:65,077,371
INFO 2026-06-04 21:43:52 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 16s. Last read position: chr14:104,801,937
INFO 2026-06-04 21:44:08 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 16s. Last read position: chr15:48,445,441
INFO 2026-06-04 21:44:25 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 16s. Last read position: chr16:547,820
INFO 2026-06-04 21:44:41 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 16s. Last read position: chr16:15,884,105
INFO 2026-06-04 21:44:58 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 16s. Last read position: chr16:27,495,259
INFO 2026-06-04 21:45:14 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 16s. Last read position: chr16:66,566,575
INFO 2026-06-04 21:45:30 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 16s. Last read position: chr17:5,183,941
INFO 2026-06-04 21:45:47 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 16s. Last read position: chr17:36,105,237
INFO 2026-06-04 21:46:03 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 16s. Last read position: chr17:47,923,050
INFO 2026-06-04 21:46:20 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 16s. Last read position: chr17:68,524,934
INFO 2026-06-04 21:46:36 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 16s. Last read position: chr17:82,870,262
INFO 2026-06-04 21:46:53 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 16s. Last read position: chr19:1,011,457
INFO 2026-06-04 21:47:09 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 16s. Last read position: chr19:8,934,937
INFO 2026-06-04 21:47:25 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 16s. Last read position: chr19:16,523,227
INFO 2026-06-04 21:47:41 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: chr19:39,829,943
INFO 2026-06-04 21:47:57 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 16s. Last read position: chr19:49,468,876
INFO 2026-06-04 21:48:14 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 16s. Last read position: chr20:15,933,305
INFO 2026-06-04 21:48:30 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 16s. Last read position: chr20:63,521,802
INFO 2026-06-04 21:48:46 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 15s. Last read position: chr21:46,126,191
INFO 2026-06-04 21:49:03 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:30s. Time for last 10,000,000: 16s. Last read position: chr22:38,074,929
INFO 2026-06-04 21:49:19 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:47s. Time for last 10,000,000: 16s. Last read position: chrX:47,185,310
INFO 2026-06-04 21:49:36 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:03s. Time for last 10,000,000: 16s. Last read position: chrX:130,013,631
INFO 2026-06-04 21:49:53 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:20s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-04 21:50:00 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-04 21:50:00 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-04 21:50:00 MarkDuplicates Getting Memory Stats.
INFO 2026-06-04 21:50:00 MarkDuplicates Before output close freeMemory: 201515832; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-04 21:50:00 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-04 21:50:00 MarkDuplicates After output close freeMemory: 104174128; totalMemory: 134217728; maxMemory: 63585648640
[Thu Jun 04 21:50:00 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.23 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory