Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/718babf022e35a7271ea911bbfe69f/659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/8b4bffaac9820f19554b2a79a1f12a/659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/87b6ab8518c815be0cb0a697e5d70d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/87b6ab8518c815be0cb0a697e5d70d/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 338190399
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	338190399
Known Splicing Events:	335181015
Partial Novel Splicing Events:	1572326
Novel Splicing Events:	1311840
Filtered Splicing Events:	125218

Total splicing  Junctions:	666432
Known Splicing Junctions:	293108
Partial Novel Splicing Junctions:	186854
Novel Splicing Junctions:	186470

===================================================================
Create BED file ...
Create Interact file ...