Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/650e727c634fc010112d82a7e47005/659_dm4-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/650e727c634fc010112d82a7e47005/659_dm4-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/c840501ae9ae3517b12aea07e2106f/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/8b134615432138199f418443793c68/659_dm4-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/c840501ae9ae3517b12aea07e2106f/.command.run ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.1qRPpdWzxa/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary -sample contains 189081096 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir -J /tmp/nxf.1qRPpdWzxa/659_dm4-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction -O /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.1qRPpdWzxa/659_dm4-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.05 min). -mapping reads to genes [10000], rate=46153.85/min [20000], rate=44444.44/min [30000], rate=43902.44/min [40000], rate=36363.64/min [50000], rate=37500.00/min [60000], rate=39130.43/min [70000], rate=40000.00/min [80000], rate=41025.64/min [90000], rate=41860.47/min [100000], rate=42553.19/min [110000], rate=43421.05/min [120000], rate=44171.78/min [130000], rate=45086.71/min [140000], rate=45652.17/min [150000], rate=45918.37/min [160000], rate=46829.27/min [170000], rate=47441.86/min [180000], rate=48000.00/min [190000], rate=48717.95/min [200000], rate=49382.72/min [210000], rate=49802.37/min [220000], rate=50381.68/min [230000], rate=51111.11/min [240000], rate=51798.56/min [250000], rate=52447.55/min [260000], rate=52881.36/min [270000], rate=53289.47/min [280000], rate=53846.15/min [290000], rate=54375.00/min [300000], rate=54878.05/min [310000], rate=55522.39/min [320000], rate=56140.35/min [330000], rate=56896.55/min [340000], rate=57790.37/min [350000], rate=58495.82/min [360000], rate=59340.66/min [370000], rate=60162.60/min [380000], rate=60800.00/min [390000], rate=61741.42/min [400000], rate=62500.00/min [410000], rate=63239.07/min [420000], rate=63636.36/min [430000], rate=64019.85/min [440000], rate=64233.58/min [450000], rate=64593.30/min [460000], rate=64941.18/min [470000], rate=65581.40/min [480000], rate=65903.89/min [490000], rate=66515.84/min [500000], rate=66964.29/min [510000], rate=67549.67/min [520000], rate=68122.27/min [530000], rate=68682.51/min [540000], rate=69083.16/min [550000], rate=69915.25/min [560000], rate=71186.44/min [570000], rate=72304.44/min [580000], rate=73572.94/min [590000], rate=74369.75/min [600000], rate=75000.00/min [610000], rate=76091.48/min [620000], rate=77178.42/min [630000], rate=77938.14/min [640000], rate=78527.61/min [650000], rate=79107.51/min [660000], rate=80324.54/min [670000], rate=81376.52/min [680000], rate=82591.09/min [690000], rate=83636.36/min [700000], rate=84848.48/min [710000], rate=86060.61/min [720000], rate=86921.53/min [730000], rate=87077.53/min [740000], rate=87920.79/min [750000], rate=88757.40/min [760000], rate=89236.79/min [770000], rate=90058.48/min [780000], rate=91228.07/min [790000], rate=91682.79/min [800000], rate=91954.02/min [810000], rate=92925.43/min [820000], rate=94072.66/min [830000], rate=95038.17/min [840000], rate=96000.00/min [850000], rate=96408.32/min [860000], rate=97175.14/min [870000], rate=98120.30/min [880000], rate=98876.40/min [890000], rate=99072.36/min [900000], rate=99447.51/min [910000], rate=100367.65/min [920000], rate=101284.40/min [930000], rate=102385.32/min [940000], rate=102919.71/min [950000], rate=103074.14/min [960000], rate=103597.12/min [970000], rate=104301.08/min [980000], rate=104626.33/min [990000], rate=104947.00/min [1000000], rate=105263.16/min [1010000], rate=105574.91/min [1020000], rate=106434.78/min [1030000], rate=107478.26/min [1040000], rate=108333.33/min [1050000], rate=109375.00/min [1060000], rate=110225.30/min [1070000], rate=111265.16/min [1080000], rate=112305.03/min [1090000], rate=112178.39/min [1100000], rate=112244.90/min [1110000], rate=112121.21/min [1120000], rate=112374.58/min [1130000], rate=112624.58/min [1140000], rate=112500.00/min [1150000], rate=112745.10/min [1160000], rate=112803.89/min [1170000], rate=112680.58/min [1180000], rate=112380.95/min [1190000], rate=112264.15/min [1200000], rate=112149.53/min [1210000], rate=112037.04/min [1220000], rate=111755.73/min [1230000], rate=111649.02/min [1240000], rate=111879.70/min [1250000], rate=112443.78/min [1260000], rate=112667.66/min [1270000], rate=113056.38/min [1280000], rate=112941.18/min [1290000], rate=112992.70/min [1300000], rate=113043.48/min [1310000], rate=113256.48/min [1320000], rate=113304.72/min [1330000], rate=113352.27/min [1340000], rate=113399.15/min [1350000], rate=112343.97/min [1360000], rate=111323.33/min [1370000], rate=110483.87/min [1380000], rate=109523.81/min [1390000], rate=108735.33/min [1400000], rate=108247.42/min [1410000], rate=107496.82/min [1420000], rate=106766.92/min [1430000], rate=105925.93/min [1440000], rate=105365.85/min [1450000], rate=104945.72/min [1460000], rate=104285.71/min [1470000], rate=103886.93/min [1480000], rate=103376.02/min [1490000], rate=102758.62/min [1500000], rate=102272.73/min [1510000], rate=101455.77/min [1520000], rate=100884.96/min [1530000], rate=100437.64/min [1540000], rate=100108.34/min [1550000], rate=99892.59/min [1560000], rate=99786.78/min [1570000], rate=99682.54/min [1580000], rate=99684.54/min [1590000], rate=99686.52/min [1600000], rate=99792.10/min [1610000], rate=100000.00/min [1620000], rate=100102.99/min [1630000], rate=100307.69/min [1640000], rate=100408.16/min [1650000], rate=100303.95/min [1660000], rate=99899.70/min [1670000], rate=99602.39/min [1680000], rate=99212.60/min -building interval tree based on /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.05 min). -mapping reads to genes [10000], rate=60000.00/min [20000], rate=63157.89/min [30000], rate=64285.71/min [40000], rate=64864.86/min [50000], rate=66666.67/min [60000], rate=66666.67/min [70000], rate=68852.46/min [80000], rate=69565.22/min [90000], rate=71052.63/min [100000], rate=69767.44/min [110000], rate=70967.74/min [120000], rate=72727.27/min [130000], rate=74285.71/min [140000], rate=76363.64/min [150000], rate=77586.21/min [160000], rate=75590.55/min [170000], rate=71830.99/min [180000], rate=70588.24/min [190000], rate=69090.91/min [200000], rate=68181.82/min [210000], rate=67379.68/min [220000], rate=67005.08/min [230000], rate=66666.67/min [240000], rate=66666.67/min [250000], rate=66666.67/min [260000], rate=66666.67/min [270000], rate=66942.15/min [280000], rate=66932.27/min [290000], rate=67181.47/min [300000], rate=67669.17/min [310000], rate=68131.87/min [320000], rate=69565.22/min [330000], rate=69964.66/min [340000], rate=70344.83/min [350000], rate=70945.95/min [360000], rate=71523.18/min [370000], rate=72312.70/min [380000], rate=73076.92/min [390000], rate=73817.03/min [400000], rate=74534.16/min [410000], rate=74545.45/min [420000], rate=73900.29/min [430000], rate=73295.45/min [440000], rate=72928.18/min [450000], rate=72580.65/min [460000], rate=72251.31/min [470000], rate=71755.73/min [480000], rate=71464.02/min [490000], rate=71014.49/min [500000], rate=70754.72/min [510000], rate=70669.75/min [520000], rate=70428.89/min [530000], rate=70353.98/min [540000], rate=70434.78/min [550000], rate=70362.47/min [560000], rate=70440.25/min [570000], rate=70515.46/min [580000], rate=70731.71/min [590000], rate=71084.34/min [600000], rate=71287.13/min [610000], rate=71484.38/min [620000], rate=71953.58/min [630000], rate=72275.33/min [640000], rate=72589.79/min [650000], rate=72897.20/min [660000], rate=73333.33/min [670000], rate=72694.39/min [680000], rate=72212.39/min [690000], rate=71750.43/min [700000], rate=71307.30/min [710000], rate=70881.86/min [720000], rate=70703.76/min [730000], rate=70531.40/min [740000], rate=70588.24/min [750000], rate=70643.64/min [760000], rate=70697.67/min [770000], rate=70858.90/min [780000], rate=70909.09/min [790000], rate=70852.02/min [800000], rate=70901.03/min [810000], rate=71052.63/min [820000], rate=71098.27/min [830000], rate=71244.64/min [840000], rate=71186.44/min [850000], rate=71129.71/min [860000], rate=71270.72/min [870000], rate=71409.03/min [880000], rate=71641.79/min [890000], rate=72064.78/min [900000], rate=72386.06/min [910000], rate=72800.00/min [920000], rate=73015.87/min [930000], rate=73324.57/min [940000], rate=73533.25/min [950000], rate=73643.41/min [960000], rate=73846.15/min [970000], rate=74045.80/min [980000], rate=74524.71/min [990000], rate=74716.98/min [1000000], rate=75000.00/min [1010000], rate=75373.13/min [1020000], rate=75742.57/min [1030000], rate=76014.76/min [1040000], rate=76190.48/min [1050000], rate=75995.17/min [1060000], rate=75804.53/min [1070000], rate=75707.55/min [1080000], rate=75524.48/min [1090000], rate=75432.53/min [1100000], rate=75342.47/min [1110000], rate=75339.37/min [1120000], rate=75420.88/min [1130000], rate=75333.33/min [1140000], rate=75330.40/min [1150000], rate=75245.37/min [1160000], rate=75243.24/min [1170000], rate=75241.16/min [1180000], rate=75319.15/min [1190000], rate=75475.69/min [1200000], rate=75630.25/min [1210000], rate=75941.42/min [1220000], rate=76170.66/min [1230000], rate=76397.52/min [1240000], rate=76622.04/min [1250000], rate=76765.61/min [1260000], rate=76518.22/min [1270000], rate=76276.28/min [1280000], rate=76039.60/min [1290000], rate=75808.03/min [1300000], rate=75508.23/min [1310000], rate=75359.54/min [1320000], rate=75285.17/min [1330000], rate=75141.24/min [1340000], rate=75070.03/min [1350000], rate=75069.51/min [1360000], rate=75207.37/min [1370000], rate=75274.73/min [1380000], rate=75409.84/min [1390000], rate=75475.11/min [1400000], rate=75675.68/min [1410000], rate=75806.45/min [1420000], rate=76003.57/min [1430000], rate=76402.49/min [1440000], rate=76595.74/min [1450000], rate=76787.29/min [1460000], rate=76977.15/min [1470000], rate=77165.35/min [1480000], rate=77419.35/min [1490000], rate=77671.59/min [1500000], rate=77653.15/min [1510000], rate=77568.49/min [1520000], rate=77551.02/min [1530000], rate=77664.97/min [1540000], rate=77581.86/min [1550000], rate=77500.00/min [1560000], rate=77547.64/min [1570000], rate=77594.73/min [1580000], rate=77641.28/min [1590000], rate=77687.30/min [1600000], rate=77858.88/min [1610000], rate=77966.10/min [1620000], rate=78072.29/min [1630000], rate=78240.00/min [1640000], rate=78468.90/min [1650000], rate=78696.34/min [1660000], rate=78735.18/min [1670000], rate=78959.81/min -building interval tree based on /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.05 min). -mapping reads to genes [10000], rate=120000.00/min [20000], rate=171428.57/min [30000], rate=225000.00/min [40000], rate=200000.00/min [50000], rate=200000.00/min [60000], rate=189473.68/min [70000], rate=190909.09/min [80000], rate=208695.65/min [90000], rate=234782.61/min [100000], rate=250000.00/min [110000], rate=227586.21/min [120000], rate=232258.06/min [130000], rate=243750.00/min [140000], rate=233333.33/min [150000], rate=230769.23/min [160000], rate=223255.81/min [170000], rate=221739.13/min [180000], rate=229787.23/min [190000], rate=242553.19/min [200000], rate=244897.96/min [210000], rate=237735.85/min [220000], rate=235714.29/min [230000], rate=242105.26/min [240000], rate=240000.00/min [250000], rate=241935.48/min [260000], rate=240000.00/min [270000], rate=234782.61/min [280000], rate=233333.33/min [290000], rate=235135.14/min [300000], rate=230769.23/min [310000], rate=232500.00/min [320000], rate=237037.04/min [330000], rate=232941.18/min [340000], rate=234482.76/min [350000], rate=230769.23/min [360000], rate=229787.23/min [370000], rate=231250.00/min [380000], rate=221359.22/min [390000], rate=191803.28/min [400000], rate=172661.87/min [410000], rate=157692.31/min [420000], rate=145664.74/min [430000], rate=135078.53/min [440000], rate=127536.23/min [450000], rate=121076.23/min [460000], rate=115481.17/min [470000], rate=111023.62/min [480000], rate=107063.20/min [490000], rate=103886.93/min [500000], rate=100334.45/min [510000], rate=98076.92/min [520000], rate=95705.52/min [530000], rate=93529.41/min [540000], rate=91525.42/min [550000], rate=89918.26/min [560000], rate=88421.05/min [570000], rate=87022.90/min [580000], rate=85925.93/min [590000], rate=84892.09/min [600000], rate=83916.08/min [610000], rate=83181.82/min [620000], rate=82483.37/min [630000], rate=81818.18/min [640000], rate=81012.66/min [650000], rate=80412.37/min [660000], rate=79838.71/min [670000], rate=79446.64/min [680000], rate=78916.83/min [690000], rate=78557.87/min [700000], rate=78358.21/min [710000], rate=78165.14/min [720000], rate=77978.34/min [730000], rate=77659.57/min [740000], rate=77622.38/min [750000], rate=77586.21/min [760000], rate=77683.13/min [770000], rate=77647.06/min [780000], rate=77740.86/min [790000], rate=77960.53/min [800000], rate=78048.78/min [810000], rate=78260.87/min [820000], rate=78594.25/min [830000], rate=78797.47/min [840000], rate=79245.28/min [850000], rate=79439.25/min [860000], rate=79876.16/min [870000], rate=80307.69/min [880000], rate=80365.30/min [890000], rate=80180.18/min [900000], rate=80000.00/min [910000], rate=79941.43/min [920000], rate=79884.23/min [930000], rate=79828.33/min [940000], rate=79886.69/min [950000], rate=80056.18/min [960000], rate=80111.27/min [970000], rate=80165.29/min [980000], rate=80218.28/min [990000], rate=80270.27/min [1000000], rate=80428.95/min [1010000], rate=80692.41/min [1020000], rate=80845.44/min [1030000], rate=80996.07/min [1040000], rate=81144.34/min [1050000], rate=81395.35/min [1060000], rate=81538.46/min [1070000], rate=81783.44/min [1080000], rate=82025.32/min [1090000], rate=82367.76/min [1100000], rate=82089.55/min [1110000], rate=81617.65/min [1120000], rate=81159.42/min [1130000], rate=80714.29/min [1140000], rate=80470.59/min [1150000], rate=80139.37/min [1160000], rate=79816.51/min [1170000], rate=79591.84/min [1180000], rate=79372.20/min [1190000], rate=79157.43/min [1200000], rate=78947.37/min [1210000], rate=78741.87/min [1220000], rate=78625.13/min [1230000], rate=78594.25/min [1240000], rate=78398.31/min [1250000], rate=78288.10/min [1260000], rate=78260.87/min [1270000], rate=78234.09/min [1280000], rate=78128.18/min [1290000], rate=78181.82/min [1300000], rate=78234.70/min [1310000], rate=78286.85/min [1320000], rate=78415.84/min [1330000], rate=78543.31/min [1340000], rate=78746.33/min [1350000], rate=78947.37/min [1360000], rate=79069.77/min [1370000], rate=79267.12/min [1380000], rate=79538.90/min [1390000], rate=79353.00/min [1400000], rate=79096.05/min [1410000], rate=78770.95/min [1420000], rate=78597.79/min [1430000], rate=78427.79/min [1440000], rate=78260.87/min [1450000], rate=78096.95/min [1460000], rate=78005.34/min [1470000], rate=77915.19/min [1480000], rate=77826.47/min [1490000], rate=77604.17/min [1500000], rate=77519.38/min [1510000], rate=77369.77/min [1520000], rate=77288.14/min [1530000], rate=77207.74/min [1540000], rate=77257.53/min [1550000], rate=77306.73/min [1560000], rate=77355.37/min [1570000], rate=77467.11/min [1580000], rate=77577.74/min [1590000], rate=77687.30/min [1600000], rate=77795.79/min [1610000], rate=77903.23/min [1620000], rate=78072.29/min [1630000], rate=78240.00/min [1640000], rate=78468.90/min [1650000], rate=78758.95/min [1660000], rate=78859.86/min [1670000], rate=78897.64/min -building interval tree based on /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.05 min). -mapping reads to genes [10000], rate=100000.00/min [20000], rate=100000.00/min [30000], rate=100000.00/min [40000], rate=104347.83/min [50000], rate=107142.86/min [60000], rate=109090.91/min [70000], rate=110526.32/min [80000], rate=106666.67/min [90000], rate=101886.79/min [100000], rate=98360.66/min [110000], rate=94285.71/min [120000], rate=87804.88/min [130000], rate=84782.61/min [140000], rate=82352.94/min [150000], rate=81081.08/min [160000], rate=79338.84/min [170000], rate=77862.60/min [180000], rate=76595.74/min [190000], rate=76510.07/min [200000], rate=75949.37/min [210000], rate=75449.10/min [220000], rate=75428.57/min [230000], rate=75824.18/min [240000], rate=76595.74/min [250000], rate=76923.08/min [260000], rate=77611.94/min [270000], rate=78640.78/min [280000], rate=79245.28/min [290000], rate=79816.51/min [300000], rate=80357.14/min [310000], rate=79487.18/min [320000], rate=78688.52/min [330000], rate=77952.76/min [340000], rate=77272.73/min [350000], rate=76923.08/min [360000], rate=76868.33/min [370000], rate=76816.61/min [380000], rate=76767.68/min [390000], rate=77227.72/min [400000], rate=77419.35/min [410000], rate=77848.10/min [420000], rate=78260.87/min [430000], rate=78899.08/min [440000], rate=79758.31/min [450000], rate=80597.01/min [460000], rate=81176.47/min [470000], rate=81739.13/min [480000], rate=81355.93/min [490000], rate=80327.87/min [500000], rate=79365.08/min [510000], rate=79274.61/min [520000], rate=78787.88/min [530000], rate=78132.68/min [540000], rate=77511.96/min [550000], rate=77283.37/min [560000], rate=76887.87/min [570000], rate=76510.07/min [580000], rate=76483.52/min [590000], rate=76129.03/min [600000], rate=75789.47/min [610000], rate=75308.64/min [620000], rate=75151.52/min [630000], rate=75149.11/min [640000], rate=75146.77/min [650000], rate=74856.05/min [660000], rate=74576.27/min [670000], rate=74582.56/min [680000], rate=74725.27/min [690000], rate=74594.59/min [700000], rate=74468.09/min [710000], rate=74475.52/min [720000], rate=74482.76/min [730000], rate=74616.70/min [740000], rate=74496.64/min [750000], rate=74503.31/min [760000], rate=74509.80/min [770000], rate=74516.13/min [780000], rate=74641.15/min [790000], rate=74645.67/min [800000], rate=74883.00/min [810000], rate=74769.23/min [820000], rate=74772.04/min [830000], rate=75000.00/min [840000], rate=75000.00/min [850000], rate=75000.00/min [860000], rate=75000.00/min [870000], rate=75000.00/min [880000], rate=75106.69/min [890000], rate=75211.27/min [900000], rate=75524.48/min [910000], rate=75728.16/min [920000], rate=76033.06/min [930000], rate=76333.79/min [940000], rate=76630.43/min [950000], rate=76612.90/min [960000], rate=75989.45/min [970000], rate=75388.60/min [980000], rate=74904.46/min [990000], rate=74623.12/min [1000000], rate=74165.64/min [1010000], rate=73812.42/min [1020000], rate=73469.39/min [1030000], rate=73136.09/min [1040000], rate=72982.46/min [1050000], rate=72748.27/min [1060000], rate=72519.95/min [1070000], rate=72378.80/min [1080000], rate=72240.80/min [1090000], rate=71947.19/min [1100000], rate=71817.19/min [1110000], rate=71689.99/min [1120000], rate=71641.79/min [1130000], rate=71746.03/min [1140000], rate=71848.74/min [1150000], rate=71875.00/min [1160000], rate=71826.63/min [1170000], rate=71852.61/min [1180000], rate=71878.17/min [1190000], rate=71975.81/min [1200000], rate=72144.29/min [1210000], rate=72382.85/min [1220000], rate=72475.25/min [1230000], rate=72709.36/min [1240000], rate=72869.74/min [1250000], rate=73099.42/min [1260000], rate=73255.81/min [1270000], rate=73410.40/min [1280000], rate=73492.82/min [1290000], rate=73925.50/min [1300000], rate=74074.07/min [1310000], rate=74220.96/min [1320000], rate=74436.09/min [1330000], rate=74649.20/min [1340000], rate=74860.34/min [1350000], rate=74861.37/min [1360000], rate=74452.55/min [1370000], rate=74120.83/min [1380000], rate=73731.08/min [1390000], rate=73480.18/min [1400000], rate=73107.05/min [1410000], rate=72868.22/min [1420000], rate=72696.25/min [1430000], rate=72466.22/min [1440000], rate=72301.26/min [1450000], rate=72139.30/min [1460000], rate=72039.47/min [1470000], rate=71941.27/min [1480000], rate=71844.66/min [1490000], rate=71807.23/min [1500000], rate=71770.33/min [1510000], rate=71677.22/min [1520000], rate=71641.79/min [1530000], rate=71662.76/min [1540000], rate=71683.48/min [1550000], rate=71759.26/min [1560000], rate=71779.14/min [1570000], rate=71908.40/min [1580000], rate=72036.47/min [1590000], rate=72163.39/min [1600000], rate=72289.16/min [1610000], rate=72413.79/min [1620000], rate=72483.22/min [1630000], rate=72605.79/min [1640000], rate=72781.07/min [1650000], rate=72955.05/min [1660000], rate=73181.48/min [1670000], rate=73245.61/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir --filt_file /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 18000000.00 reads per min processed... 12000000.00 reads per min processed... 10000000.00 reads per min processed... 7200000.00 reads per min processed... 7000000.00 reads per min processed... 6857142.86 reads per min processed... 6750000.00 reads per min processed... 6666666.67 reads per min processed... 6600000.00 reads per min processed... 6545454.55 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5700000.00 reads per min processed... 5714285.71 reads per min processed... 5727272.73 reads per min processed... 5500000.00 reads per min processed... 5520000.00 reads per min processed... 5538461.54 reads per min processed... 5555555.56 reads per min processed... 5571428.57 reads per min processed... 5586206.90 reads per min processed... 5600000.00 reads per min processed... 5612903.23 reads per min processed... 5454545.45 reads per min processed... 5470588.24 reads per min processed... 5485714.29 reads per min processed... 5657142.86 reads per min processed... 5828571.43 reads per min processed... 5833333.33 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5880000.00 reads per min processed... 5882352.94 reads per min processed... 5884615.38 reads per min processed... 5886792.45 reads per min processed... 5888888.89 reads per min processed... 5890909.09 reads per min processed... 5789473.68 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.1qRPpdWzxa/659_dm4-T1-TRNA-1_B23MHV2LT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -249490.477177 EM: Round [1] log likelihood: -249360.648456 EM: Round [2] log likelihood: -249313.098164 EM: Round [3] log likelihood: -249290.110098 EM: Round [4] log likelihood: -249277.627144 EM: Round [5] log likelihood: -249270.368337 EM: Round [6] log likelihood: -249265.924370 EM: Round [7] log likelihood: -249263.080126 EM: Round [8] log likelihood: -249261.185896 EM: Round [9] log likelihood: -249259.878976 EM: Round [10] log likelihood: -249258.948915 EM: Round [11] log likelihood: -249258.269014 EM: Round [12] log likelihood: -249257.760268 EM: Round [13] log likelihood: -249257.371767 EM: Round [14] log likelihood: -249257.069718 EM: Round [15] log likelihood: -249256.831082 EM: Round [16] log likelihood: -249256.639784 EM: Round [17] log likelihood: -249256.484378 EM: Round [18] log likelihood: -249256.356568 EM: Round [19] log likelihood: -249256.250251 EM: Round [20] log likelihood: -249256.160868 EM: Round [21] log likelihood: -249256.084979 EM: Round [22] log likelihood: -249256.019953 EM: Round [23] log likelihood: -249255.963758 EM: Round [24] log likelihood: -249255.914811 EM: Round [25] log likelihood: -249255.871865 EM: Round [26] log likelihood: -249255.833930 EM: Round [27] log likelihood: -249255.800214 EM: Round [28] log likelihood: -249255.770076 EM: Round [29] log likelihood: -249255.742995 EM: Round [30] log likelihood: -249255.718543 EM: Round [31] log likelihood: -249255.696368 EM: Round [32] log likelihood: -249255.676176 EM: Round [33] log likelihood: -249255.657721 EM: Round [34] log likelihood: -249255.640794 EM: Round [35] log likelihood: -249255.625221 EM: Round [36] log likelihood: -249255.610851 EM: Round [37] log likelihood: -249255.597555 EM: Round [38] log likelihood: -249255.585221 EM: Round [39] log likelihood: -249255.573754 EM: Round [40] log likelihood: -249255.563068 EM: Round [41] log likelihood: -249255.553091 EM: Round [42] log likelihood: -249255.543757 EM: Round [43] log likelihood: -249255.535010 EM: Round [44] log likelihood: -249255.526798 EM: Round [45] log likelihood: -249255.519077 EM: Round [46] log likelihood: -249255.511805 EM: Round [47] log likelihood: -249255.504948 EM: Round [48] log likelihood: -249255.498473 EM: Round [49] log likelihood: -249255.492351 EM: Round [50] log likelihood: -249255.486554 EM: Round [51] log likelihood: -249255.481061 EM: Round [52] log likelihood: -249255.475848 EM: Round [53] log likelihood: -249255.470896 EM: Round [54] log likelihood: -249255.466188 EM: Round [55] log likelihood: -249255.461707 EM: Round [56] log likelihood: -249255.457438 EM: Round [57] log likelihood: -249255.453367 EM: Round [58] log likelihood: -249255.449482 EM: Round [59] log likelihood: -249255.445771 EM: Round [60] log likelihood: -249255.442224 EM: Round [61] log likelihood: -249255.438831 EM: Round [62] log likelihood: -249255.435582 EM: Round [63] log likelihood: -249255.432470 EM: Round [64] log likelihood: -249255.429487 EM: Round [65] log likelihood: -249255.426625 EM: Round [66] log likelihood: -249255.423877 EM: Round [67] log likelihood: -249255.421238 EM: Round [68] log likelihood: -249255.418703 EM: Round [69] log likelihood: -249255.416264 EM: Round [70] log likelihood: -249255.413918 EM: Round [71] log likelihood: -249255.411659 EM: Round [72] log likelihood: -249255.409484 EM: Round [73] log likelihood: -249255.407389 EM: Round [74] log likelihood: -249255.405368 EM: Round [75] log likelihood: -249255.403420 EM: Round [76] log likelihood: -249255.401540 EM: Round [77] log likelihood: -249255.399725 EM: Round [78] log likelihood: -249255.397973 EM: Round [79] log likelihood: -249255.396280 EM: Round [80] log likelihood: -249255.394644 EM: Round [81] log likelihood: -249255.393063 EM: Round [82] log likelihood: -249255.391533 EM: Round [83] log likelihood: -249255.390054 EM: Round [84] log likelihood: -249255.388623 EM: Round [85] log likelihood: -249255.387237 EM: Round [86] log likelihood: -249255.385895 EM: Round [87] log likelihood: -249255.384596 EM: Round [88] log likelihood: -249255.383337 EM: Round [89] log likelihood: -249255.382117 EM: Round [90] log likelihood: -249255.380934 EM: Round [91] log likelihood: -249255.379788 EM: Round [92] log likelihood: -249255.378676 EM: Round [93] log likelihood: -249255.377597 EM: Round [94] log likelihood: -249255.376551 EM: Round [95] log likelihood: -249255.375536 EM: Round [96] log likelihood: -249255.374550 EM: Round [97] log likelihood: -249255.373593 EM: Round [98] log likelihood: -249255.372664 EM: Round [99] log likelihood: -249255.371762 EM: Round [100] log likelihood: -249255.370886 EM: Round [101] log likelihood: -249255.370034 EM: Round [102] log likelihood: -249255.369207 EM: Round [103] log likelihood: -249255.368403 EM: Round [104] log likelihood: -249255.367622 EM: Round [105] log likelihood: -249255.366862 EM: Round [106] log likelihood: -249255.366124 EM: Round [107] log likelihood: -249255.365406 EM: Round [108] log likelihood: -249255.364708 EM: Round [109] log likelihood: -249255.364028 EM: Round [110] log likelihood: -249255.363368 EM: Round [111] log likelihood: -249255.362725 EM: Round [112] log likelihood: -249255.362100 EM: Round [113] log likelihood: -249255.361491 EM: Round [114] log likelihood: -249255.360899 EM: Round [115] log likelihood: -249255.360323 EM: Round [116] log likelihood: -249255.359762 EM: Round [117] log likelihood: -249255.359216 EM: Round [118] log likelihood: -249255.358684 EM: Round [119] log likelihood: -249255.358166 EM: Round [120] log likelihood: -249255.357662 EM: Round [121] log likelihood: -249255.357171 EM: Round [122] log likelihood: -249255.356693 EM: Round [123] log likelihood: -249255.356228 EM: Round [124] log likelihood: -249255.355774 EM: Round [125] log likelihood: -249255.355332 EM: Round [126] log likelihood: -249255.354902 EM: Round [127] log likelihood: -249255.354483 EM: Round [128] log likelihood: -249255.354074 EM: Round [129] log likelihood: -249255.353676 EM: Round [130] log likelihood: -249255.353288 EM: Round [131] log likelihood: -249255.352910 EM: Round [132] log likelihood: -249255.352542 EM: Round [133] log likelihood: -249255.352183 EM: Round [134] log likelihood: -249255.351833 EM: Round [135] log likelihood: -249255.351492 EM: Round [136] log likelihood: -249255.351159 EM: Round [137] log likelihood: -249255.350835 EM: Round [138] log likelihood: -249255.350519 EM: Round [139] log likelihood: -249255.350211 EM: Round [140] log likelihood: -249255.349911 EM: Round [141] log likelihood: -249255.349618 EM: Round [142] log likelihood: -249255.349332 EM: Round [143] log likelihood: -249255.349054 EM: Round [144] log likelihood: -249255.348783 EM: Round [145] log likelihood: -249255.348518 EM: Round [146] log likelihood: -249255.348260 EM: Round [147] log likelihood: -249255.348008 EM: Round [148] log likelihood: -249255.347762 EM: Round [149] log likelihood: -249255.347523 EM: Round [150] log likelihood: -249255.347289 EM: Round [151] log likelihood: -249255.347061 EM: Round [152] log likelihood: -249255.346839 EM: Round [153] log likelihood: -249255.346622 EM: Round [154] log likelihood: -249255.346410 EM: Round [155] log likelihood: -249255.346204 EM: Round [156] log likelihood: -249255.346003 EM: Round [157] log likelihood: -249255.345806 EM: Round [158] log likelihood: -249255.345615 EM: Round [159] log likelihood: -249255.345428 EM: Round [160] log likelihood: -249255.345245 EM: Round [161] log likelihood: -249255.345068 EM: Round [162] log likelihood: -249255.344894 EM: Round [163] log likelihood: -249255.344724 EM: Round [164] log likelihood: -249255.344559 EM: Round [165] log likelihood: -249255.344398 EM: Round [166] log likelihood: -249255.344240 EM: Round [167] log likelihood: -249255.344087 EM: Round [168] log likelihood: -249255.343937 EM: Round [169] log likelihood: -249255.343790 EM: Round [170] log likelihood: -249255.343648 EM: Round [171] log likelihood: -249255.343508 EM: Round [172] log likelihood: -249255.343372 EM: Round [173] log likelihood: -249255.343239 EM: Round [174] log likelihood: -249255.343110 EM: Round [175] log likelihood: -249255.342983 EM: Round [176] log likelihood: -249255.342860 EM: Round [177] log likelihood: -249255.342739 EM: Round [178] log likelihood: -249255.342622 EM: Round [179] log likelihood: -249255.342507 EM: Round [180] log likelihood: -249255.342395 EM: Round [181] log likelihood: -249255.342285 EM: Round [182] log likelihood: -249255.342178 EM: Round [183] log likelihood: -249255.342074 EM: Round [184] log likelihood: -249255.341972 EM: Round [185] log likelihood: -249255.341873 EM: Stopping iterations at round 185 due to insufficient improvement in likelihood. EM: Starting log likelihood: -248970.687937 EM: Round [1] log likelihood: -248864.910475 EM: Round [2] log likelihood: -248826.869121 EM: Round [3] log likelihood: -248808.881100 EM: Round [4] log likelihood: -248799.333179 EM: Round [5] log likelihood: -248793.898401 EM: Round [6] log likelihood: -248790.634723 EM: Round [7] log likelihood: -248788.580656 EM: Round [8] log likelihood: -248787.231310 EM: Round [9] log likelihood: -248786.309801 EM: Round [10] log likelihood: -248785.658344 EM: Round [11] log likelihood: -248785.183642 EM: Round [12] log likelihood: -248784.828511 EM: Round [13] log likelihood: -248784.556671 EM: Round [14] log likelihood: -248784.344352 EM: Round [15] log likelihood: -248784.175523 EM: Round [16] log likelihood: -248784.039091 EM: Round [17] log likelihood: -248783.927206 EM: Round [18] log likelihood: -248783.834207 EM: Round [19] log likelihood: -248783.755943 EM: Round [20] log likelihood: -248783.689322 EM: Round [21] log likelihood: -248783.632017 EM: Round [22] log likelihood: -248783.582249 EM: Round [23] log likelihood: -248783.538648 EM: Round [24] log likelihood: -248783.500146 EM: Round [25] log likelihood: -248783.465900 EM: Round [26] log likelihood: -248783.435243 EM: Round [27] log likelihood: -248783.407639 EM: Round [28] log likelihood: -248783.382651 EM: Round [29] log likelihood: -248783.359927 EM: Round [30] log likelihood: -248783.339172 EM: Round [31] log likelihood: -248783.320144 EM: Round [32] log likelihood: -248783.302639 EM: Round [33] log likelihood: -248783.286485 EM: Round [34] log likelihood: -248783.271536 EM: Round [35] log likelihood: -248783.257666 EM: Round [36] log likelihood: -248783.244768 EM: Round [37] log likelihood: -248783.232746 EM: Round [38] log likelihood: -248783.221520 EM: Round [39] log likelihood: -248783.211018 EM: Round [40] log likelihood: -248783.201175 EM: Round [41] log likelihood: -248783.191937 EM: Round [42] log likelihood: -248783.183252 EM: Round [43] log likelihood: -248783.175077 EM: Round [44] log likelihood: -248783.167370 EM: Round [45] log likelihood: -248783.160097 EM: Round [46] log likelihood: -248783.153225 EM: Round [47] log likelihood: -248783.146723 EM: Round [48] log likelihood: -248783.140567 EM: Round [49] log likelihood: -248783.134730 EM: Round [50] log likelihood: -248783.129192 EM: Round [51] log likelihood: -248783.123931 EM: Round [52] log likelihood: -248783.118930 EM: Round [53] log likelihood: -248783.114171 EM: Round [54] log likelihood: -248783.109639 EM: Round [55] log likelihood: -248783.105319 EM: Round [56] log likelihood: -248783.101199 EM: Round [57] log likelihood: -248783.097265 EM: Round [58] log likelihood: -248783.093508 EM: Round [59] log likelihood: -248783.089915 EM: Round [60] log likelihood: -248783.086479 EM: Round [61] log likelihood: -248783.083189 EM: Round [62] log likelihood: -248783.080038 EM: Round [63] log likelihood: -248783.077017 EM: Round [64] log likelihood: -248783.074120 EM: Round [65] log likelihood: -248783.071340 EM: Round [66] log likelihood: -248783.068671 EM: Round [67] log likelihood: -248783.066106 EM: Round [68] log likelihood: -248783.063641 EM: Round [69] log likelihood: -248783.061270 EM: Round [70] log likelihood: -248783.058989 EM: Round [71] log likelihood: -248783.056793 EM: Round [72] log likelihood: -248783.054678 EM: Round [73] log likelihood: -248783.052639 EM: Round [74] log likelihood: -248783.050675 EM: Round [75] log likelihood: -248783.048780 EM: Round [76] log likelihood: -248783.046952 EM: Round [77] log likelihood: -248783.045188 EM: Round [78] log likelihood: -248783.043484 EM: Round [79] log likelihood: -248783.041839 EM: Round [80] log likelihood: -248783.040249 EM: Round [81] log likelihood: -248783.038712 EM: Round [82] log likelihood: -248783.037226 EM: Round [83] log likelihood: -248783.035789 EM: Round [84] log likelihood: -248783.034398 EM: Round [85] log likelihood: -248783.033052 EM: Round [86] log likelihood: -248783.031750 EM: Round [87] log likelihood: -248783.030488 EM: Round [88] log likelihood: -248783.029266 EM: Round [89] log likelihood: -248783.028082 EM: Round [90] log likelihood: -248783.026934 EM: Round [91] log likelihood: -248783.025822 EM: Round [92] log likelihood: -248783.024743 EM: Round [93] log likelihood: -248783.023697 EM: Round [94] log likelihood: -248783.022682 EM: Round [95] log likelihood: -248783.021698 EM: Round [96] log likelihood: -248783.020743 EM: Round [97] log likelihood: -248783.019815 EM: Round [98] log likelihood: -248783.018915 EM: Round [99] log likelihood: -248783.018041 EM: Round [100] log likelihood: -248783.017192 EM: Round [101] log likelihood: -248783.016367 EM: Round [102] log likelihood: -248783.015566 EM: Round [103] log likelihood: -248783.014787 EM: Round [104] log likelihood: -248783.014031 EM: Round [105] log likelihood: -248783.013296 EM: Round [106] log likelihood: -248783.012581 EM: Round [107] log likelihood: -248783.011886 EM: Round [108] log likelihood: -248783.011210 EM: Round [109] log likelihood: -248783.010553 EM: Round [110] log likelihood: -248783.009914 EM: Round [111] log likelihood: -248783.009292 EM: Round [112] log likelihood: -248783.008687 EM: Round [113] log likelihood: -248783.008099 EM: Round [114] log likelihood: -248783.007526 EM: Round [115] log likelihood: -248783.006969 EM: Round [116] log likelihood: -248783.006426 EM: Round [117] log likelihood: -248783.005899 EM: Round [118] log likelihood: -248783.005385 EM: Round [119] log likelihood: -248783.004884 EM: Round [120] log likelihood: -248783.004397 EM: Round [121] log likelihood: -248783.003923 EM: Round [122] log likelihood: -248783.003461 EM: Round [123] log likelihood: -248783.003011 EM: Round [124] log likelihood: -248783.002573 EM: Round [125] log likelihood: -248783.002147 EM: Round [126] log likelihood: -248783.001731 EM: Round [127] log likelihood: -248783.001326 EM: Round [128] log likelihood: -248783.000932 EM: Round [129] log likelihood: -248783.000548 EM: Round [130] log likelihood: -248783.000173 EM: Round [131] log likelihood: -248782.999809 EM: Round [132] log likelihood: -248782.999453 EM: Round [133] log likelihood: -248782.999107 EM: Round [134] log likelihood: -248782.998769 EM: Round [135] log likelihood: -248782.998440 EM: Round [136] log likelihood: -248782.998119 EM: Round [137] log likelihood: -248782.997807 EM: Round [138] log likelihood: -248782.997502 EM: Round [139] log likelihood: -248782.997205 EM: Round [140] log likelihood: -248782.996916 EM: Round [141] log likelihood: -248782.996634 EM: Round [142] log likelihood: -248782.996358 EM: Round [143] log likelihood: -248782.996090 EM: Round [144] log likelihood: -248782.995829 EM: Round [145] log likelihood: -248782.995573 EM: Round [146] log likelihood: -248782.995325 EM: Round [147] log likelihood: -248782.995082 EM: Round [148] log likelihood: -248782.994846 EM: Round [149] log likelihood: -248782.994615 EM: Round [150] log likelihood: -248782.994390 EM: Round [151] log likelihood: -248782.994171 EM: Round [152] log likelihood: -248782.993957 EM: Round [153] log likelihood: -248782.993749 EM: Round [154] log likelihood: -248782.993545 EM: Round [155] log likelihood: -248782.993347 EM: Round [156] log likelihood: -248782.993153 EM: Round [157] log likelihood: -248782.992964 EM: Round [158] log likelihood: -248782.992780 EM: Round [159] log likelihood: -248782.992600 EM: Round [160] log likelihood: -248782.992425 EM: Round [161] log likelihood: -248782.992254 EM: Round [162] log likelihood: -248782.992087 EM: Round [163] log likelihood: -248782.991925 EM: Round [164] log likelihood: -248782.991766 EM: Round [165] log likelihood: -248782.991611 EM: Round [166] log likelihood: -248782.991460 EM: Round [167] log likelihood: -248782.991313 EM: Round [168] log likelihood: -248782.991169 EM: Round [169] log likelihood: -248782.991028 EM: Round [170] log likelihood: -248782.990891 EM: Round [171] log likelihood: -248782.990758 EM: Round [172] log likelihood: -248782.990628 EM: Round [173] log likelihood: -248782.990500 EM: Round [174] log likelihood: -248782.990376 EM: Round [175] log likelihood: -248782.990255 EM: Round [176] log likelihood: -248782.990137 EM: Round [177] log likelihood: -248782.990022 EM: Round [178] log likelihood: -248782.989909 EM: Round [179] log likelihood: -248782.989799 EM: Round [180] log likelihood: -248782.989692 EM: Round [181] log likelihood: -248782.989587 EM: Round [182] log likelihood: -248782.989485 EM: Round [183] log likelihood: -248782.989386 EM: Stopping iterations at round 183 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 189081096 > /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir > /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir --annotate /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir -done, see /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 1802, filtered: 10367) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.1qRPpdWzxa/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.1qRPpdWzxa/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [ENSG00000239268.3] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000204434.6] WARNING, no entry 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entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000230202.1] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000234769.7] WARNING, no entry stored in dbm for [ENSG00000237590.1] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000287411.1] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000238069.1] WARNING, no entry stored in dbm for [ENSG00000229119.3] WARNING, no entry stored in dbm for [ENSG00000248927.1] WARNING, no entry stored in dbm for [ENSG00000272655.2] WARNING, no entry stored in dbm for [ENSG00000215546.2] WARNING, no entry stored in dbm for [ENSG00000181577.16] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000267519.6] WARNING, no entry stored in dbm for [ENSG00000229891.2] WARNING, no entry stored in dbm for [ENSG00000233806.7] WARNING, no entry stored in dbm for [ENSG00000229608.1] WARNING, no entry stored in dbm for [ENSG00000267348.3] WARNING, no entry stored in dbm for [ENSG00000256508.2] WARNING, no entry stored in dbm for [ENSG00000237773.7] WARNING, no entry stored in dbm for [ENSG00000233098.9] WARNING, no entry stored in dbm for [ENSG00000263647.1] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000275613.2] WARNING, no entry stored in dbm for [ENSG00000276888.1] WARNING, no entry stored in dbm for [ENSG00000279096.2] WARNING, no entry stored in dbm for [ENSG00000275741.1] WARNING, no entry stored in dbm for [ENSG00000227486.2] WARNING, no entry stored in dbm for [ENSG00000265018.6] WARNING, no entry stored in dbm for [ENSG00000284964.1] WARNING, no entry stored in dbm for 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WARNING, no entry stored in dbm for [ENSG00000243584.1] WARNING, no entry stored in dbm for [ENSG00000185485.14] WARNING, no entry stored in dbm for [ENSG00000267519.6] WARNING, no entry stored in dbm for [ENSG00000268282.1] WARNING, no entry stored in dbm for [ENSG00000231770.6] WARNING, no entry stored in dbm for [ENSG00000240405.7] WARNING, no entry stored in dbm for [ENSG00000286943.1] WARNING, no entry stored in dbm for [ENSG00000224043.8] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000280623.1] WARNING, no entry stored in dbm for [ENSG00000240549.2] WARNING, no entry stored in dbm for [ENSG00000271913.7] WARNING, no entry stored in dbm for [ENSG00000225624.1] WARNING, no entry stored in dbm for [ENSG00000250398.1] WARNING, no entry stored in dbm for [ENSG00000234474.3] WARNING, no entry stored in dbm for [ENSG00000241316.8] WARNING, no entry stored in dbm for [ENSG00000233006.8] WARNING, no entry stored in dbm for 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WARNING, no entry stored in dbm for [ENSG00000213653.4] WARNING, no entry stored in dbm for [ENSG00000173209.23] WARNING, no entry stored in dbm for [ENSG00000243856.3] WARNING, no entry stored in dbm for [ENSG00000239820.3] WARNING, no entry stored in dbm for [ENSG00000263988.2] WARNING, no entry stored in dbm for [ENSG00000249673.7] WARNING, no entry stored in dbm for [ENSG00000274585.1] WARNING, no entry stored in dbm for [ENSG00000207269.1] WARNING, no entry stored in dbm for [ENSG00000201201.1] WARNING, no entry stored in dbm for [ENSG00000278834.1] WARNING, no entry stored in dbm for [ENSG00000198555.7] WARNING, no entry stored in dbm for [ENSG00000236772.1] WARNING, no entry stored in dbm for [ENSG00000230305.2] WARNING, no entry stored in dbm for [ENSG00000230556.1] WARNING, no entry stored in dbm for [ENSG00000266931.2] WARNING, no entry stored in dbm for [ENSG00000248645.1] WARNING, no entry stored in dbm for [ENSG00000228016.1] WARNING, no entry stored in dbm for [ENSG00000253438.4] WARNING, no entry stored in dbm for [ENSG00000285835.1] WARNING, no entry stored in dbm for [ENSG00000249859.12] WARNING, no entry stored in dbm for [ENSG00000249550.7] WARNING, no entry stored in dbm for [ENSG00000228415.3] WARNING, no entry stored in dbm for [ENSG00000236532.6] WARNING, no entry stored in dbm for [ENSG00000281128.2] WARNING, no entry stored in dbm for [ENSG00000262227.1] WARNING, no entry stored in dbm for [ENSG00000230487.8] WARNING, no entry stored in dbm for [ENSG00000239636.1] WARNING, no entry stored in dbm for [ENSG00000266924.1] WARNING, no entry stored in dbm for [ENSG00000203739.4] WARNING, no entry stored in dbm for [ENSG00000215063.3] WARNING, no entry stored in dbm for [ENSG00000258018.2] WARNING, no entry stored in dbm for [ENSG00000251680.6] WARNING, no entry stored in dbm for [ENSG00000131002.12] WARNING, no entry stored in dbm for [ENSG00000245694.10] WARNING, no entry stored in dbm for [ENSG00000269210.2] WARNING, no entry stored in dbm for [ENSG00000272195.1] WARNING, no entry stored in dbm for [ENSG00000261564.1] WARNING, no entry stored in dbm for [ENSG00000229647.2] WARNING, no entry stored in dbm for [ENSG00000179899.8] WARNING, no entry stored in dbm for [ENSG00000255185.6] WARNING, no entry stored in dbm for [ENSG00000250284.3] WARNING, no entry stored in dbm for [ENSG00000260867.1] WARNING, no entry stored in dbm for [ENSG00000281880.2] WARNING, no entry stored in dbm for [ENSG00000172965.17] WARNING, no entry stored in dbm for [ENSG00000255875.2] WARNING, no entry stored in dbm for [ENSG00000236432.8] WARNING, no entry stored in dbm for [ENSG00000287975.1] WARNING, no entry stored in dbm for [ENSG00000279927.1] WARNING, no entry stored in dbm for [ENSG00000259275.4] WARNING, no entry stored in dbm for [ENSG00000259275.4] WARNING, no entry stored in dbm for [ENSG00000288581.1] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000239763.2] WARNING, no entry stored in dbm for [ENSG00000259719.6] WARNING, no entry stored in dbm for [ENSG00000232729.8] WARNING, no entry stored in dbm for [ENSG00000253604.1] WARNING, no entry stored in dbm for [ENSG00000284052.1] WARNING, no entry stored in dbm for [ENSG00000255165.1] WARNING, no entry stored in dbm for [ENSG00000230942.1] WARNING, no entry stored in dbm for [ENSG00000224555.3] WARNING, no entry stored in dbm for [ENSG00000267014.6] WARNING, no entry stored in dbm for [ENSG00000260473.2] WARNING, no entry stored in dbm for [ENSG00000254777.5] WARNING, no entry stored in dbm for [ENSG00000266179.2] WARNING, no entry stored in dbm for [ENSG00000249752.1] WARNING, no entry stored in dbm for [ENSG00000226846.2] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000288549.1] WARNING, no entry stored in dbm for [ENSG00000177359.20] WARNING, no entry stored in dbm for [ENSG00000231154.1] WARNING, no entry stored in dbm for [ENSG00000236172.7] WARNING, no entry stored in dbm for [ENSG00000233006.8] WARNING, no entry stored in dbm for [ENSG00000223749.11] WARNING, no entry stored in dbm for [ENSG00000258811.1] WARNING, no entry stored in dbm for [ENSG00000229992.1] WARNING, no entry stored in dbm for [ENSG00000259020.3] WARNING, no entry stored in dbm for [ENSG00000225783.8] WARNING, no entry stored in dbm for [ENSG00000131002.12] WARNING, no entry stored in dbm for [ENSG00000286787.1] WARNING, no entry stored in dbm for [ENSG00000264589.4] WARNING, no entry stored in dbm for [ENSG00000234456.8] WARNING, no entry stored in dbm for [ENSG00000272610.1] WARNING, no entry stored in dbm for [ENSG00000277142.1] WARNING, no entry stored in dbm for [ENSG00000248323.7] WARNING, no entry stored in dbm for [ENSG00000251842.1] WARNING, no entry stored in dbm for [ENSG00000201852.1] WARNING, no entry stored in dbm for [ENSG00000263142.5] WARNING, no entry stored in dbm for [ENSG00000271013.1] WARNING, no entry stored in dbm for [ENSG00000277426.1] WARNING, no entry stored in dbm for [ENSG00000259666.3] WARNING, no entry stored in dbm for [ENSG00000285737.1] WARNING, no entry stored in dbm for [ENSG00000229536.3] WARNING, no entry stored in dbm for [ENSG00000251129.2] WARNING, no entry stored in dbm for [ENSG00000233013.10] WARNING, no entry stored in dbm for [ENSG00000251129.2] WARNING, no entry stored in dbm for [ENSG00000248238.2] WARNING, no entry stored in dbm for [ENSG00000257906.3] WARNING, no entry stored in dbm for [ENSG00000249785.3] WARNING, no entry stored in dbm for [ENSG00000234634.2] WARNING, no entry stored in dbm for [ENSG00000260019.2] WARNING, no entry stored in dbm for [ENSG00000224961.3] WARNING, no entry stored in dbm for [ENSG00000198685.4] WARNING, no entry stored in dbm for [ENSG00000237352.4] WARNING, no entry stored in dbm for [ENSG00000253734.2] WARNING, no entry stored in dbm for [ENSG00000235437.8] WARNING, no entry stored in dbm for [ENSG00000281404.2] WARNING, no entry stored in dbm for [ENSG00000240707.3] WARNING, no entry stored in dbm for [ENSG00000228794.10] WARNING, no entry stored in dbm for [ENSG00000228794.10] WARNING, no entry stored in dbm for [ENSG00000249069.8] WARNING, no entry stored in dbm for [ENSG00000241769.7] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000281392.2] WARNING, no entry stored in dbm for [ENSG00000153363.13] WARNING, no entry stored in dbm for [ENSG00000179219.5] WARNING, no entry stored in dbm for [ENSG00000227456.9] WARNING, no entry stored in dbm for [ENSG00000165121.11] WARNING, no entry stored in dbm for [ENSG00000225438.1] WARNING, no entry stored in dbm for [ENSG00000205312.8] WARNING, no entry stored in dbm for [ENSG00000234996.4] WARNING, no entry stored in dbm for [ENSG00000250900.6] WARNING, no entry stored in dbm for [ENSG00000254034.2] WARNING, no entry stored in dbm for [ENSG00000188451.8] WARNING, no entry stored in dbm for [ENSG00000245067.7] WARNING, no entry stored in dbm for [ENSG00000259685.3] WARNING, no entry stored in dbm for [ENSG00000229348.1] WARNING, no entry stored in dbm for [ENSG00000276975.3] WARNING, no entry stored in dbm for [ENSG00000241743.4] WARNING, no entry stored in dbm for [ENSG00000286694.1] WARNING, no entry stored in dbm for [ENSG00000259228.1] WARNING, no entry stored in dbm for [ENSG00000179362.14] WARNING, no entry stored in dbm for [ENSG00000238013.1] WARNING, no entry stored in dbm for [ENSG00000232354.8] WARNING, no entry stored in dbm for [ENSG00000250762.1] WARNING, no entry stored in dbm for [ENSG00000250966.2] WARNING, no entry stored in dbm for [ENSG00000265541.1] WARNING, no entry stored in dbm for [ENSG00000183666.17] WARNING, no entry stored in dbm for [ENSG00000272645.3] WARNING, no entry stored in dbm for [ENSG00000250980.1] WARNING, no entry stored in dbm for [ENSG00000253190.4] WARNING, no entry stored in dbm for [ENSG00000286415.1] WARNING, no entry stored in dbm for [ENSG00000237037.9] WARNING, no entry stored in dbm for [ENSG00000237037.9] WARNING, no entry stored in dbm for [ENSG00000281103.2] WARNING, no entry stored in dbm for [ENSG00000269332.5] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000231113.2] WARNING, no entry stored in dbm for [ENSG00000237940.3] WARNING, no entry stored in dbm for [ENSG00000280407.2] WARNING, no entry stored in dbm for [ENSG00000188828.13] WARNING, no entry stored in dbm for [ENSG00000259404.5] WARNING, no entry stored in dbm for [ENSG00000240288.8] WARNING, no entry stored in dbm for [ENSG00000251209.9] WARNING, no entry stored in dbm for [ENSG00000248587.8] WARNING, no entry stored in dbm for [ENSG00000240859.3] WARNING, no entry stored in dbm for [ENSG00000224858.5] WARNING, no entry stored in dbm for [ENSG00000227014.6] WARNING, no entry stored in dbm for [ENSG00000214886.4] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000240787.1] WARNING, no entry stored in dbm for [ENSG00000274525.1] WARNING, no entry stored in dbm for [ENSG00000260565.7] WARNING, no entry stored in dbm for [ENSG00000260565.7] WARNING, no entry stored in dbm for [ENSG00000260565.7] WARNING, no entry stored in dbm for [ENSG00000268120.1] WARNING, no entry stored in dbm for [ENSG00000281708.1] WARNING, no entry stored in dbm for [ENSG00000264044.1] WARNING, no entry stored in dbm for [ENSG00000232153.3] WARNING, no entry stored in dbm for [ENSG00000207045.1] WARNING, no entry stored in dbm for [ENSG00000207115.1] WARNING, no entry stored in dbm for [ENSG00000230424.1] WARNING, no entry stored in dbm for [ENSG00000255441.1] WARNING, no entry stored in dbm for [ENSG00000234152.1] WARNING, no entry stored in dbm for [ENSG00000279047.4] WARNING, no entry stored in dbm for [ENSG00000263883.1] WARNING, no entry stored in dbm for [ENSG00000244306.11] WARNING, no entry stored in dbm for [ENSG00000274827.4] WARNING, no entry stored in dbm for [ENSG00000186704.9] WARNING, no entry stored in dbm for [ENSG00000186704.9] WARNING, no entry stored in dbm for [ENSG00000251101.1] WARNING, no entry stored in dbm for [ENSG00000260782.1] WARNING, no entry stored in dbm for [ENSG00000235706.8] WARNING, no entry stored in dbm for [ENSG00000228002.2] WARNING, no entry stored in dbm for [ENSG00000286152.1] WARNING, no entry stored in dbm for [ENSG00000256381.1] WARNING, no entry stored in dbm for [ENSG00000249623.1] WARNING, no entry stored in dbm for [ENSG00000232044.7] WARNING, no entry stored in dbm for [ENSG00000240305.1] WARNING, no entry stored in dbm for [ENSG00000278903.3] WARNING, no entry stored in dbm for [ENSG00000237290.2] WARNING, no entry stored in dbm for [ENSG00000271711.1] WARNING, no entry stored in dbm for [ENSG00000226891.9] WARNING, no entry stored in dbm for [ENSG00000215417.13] WARNING, no entry stored in dbm for [ENSG00000267489.5] WARNING, no entry stored in dbm for [ENSG00000258689.1] WARNING, no entry stored in dbm for [ENSG00000259295.6] WARNING, no entry stored in dbm for [ENSG00000235038.1] WARNING, no entry stored in dbm for [ENSG00000173077.16] WARNING, no entry stored in dbm for [ENSG00000225005.1] WARNING, no entry stored in dbm for [ENSG00000259755.1] WARNING, no entry stored in dbm for [ENSG00000272888.7] WARNING, no entry stored in dbm for [ENSG00000272888.7] WARNING, no entry stored in dbm for [ENSG00000226312.7] WARNING, no entry stored in dbm for [ENSG00000227617.9] WARNING, no entry stored in dbm for [ENSG00000280407.2] WARNING, no entry stored in dbm for [ENSG00000226937.9] WARNING, no entry stored in dbm for [ENSG00000288050.1] WARNING, no entry stored in dbm for [ENSG00000273679.1] WARNING, no entry stored in dbm for [ENSG00000228409.6] WARNING, no entry stored in dbm for [ENSG00000260840.2] WARNING, no entry stored in dbm for [ENSG00000249375.8] WARNING, no entry stored in dbm for [ENSG00000249669.10] WARNING, no entry stored in dbm for [ENSG00000178722.13] WARNING, no entry stored in dbm for [ENSG00000178722.13] WARNING, no entry stored in dbm for [ENSG00000287151.1] WARNING, no entry stored in dbm for [ENSG00000248690.8] WARNING, no entry stored in dbm for [ENSG00000188511.12] WARNING, no entry stored in dbm for [ENSG00000240280.7] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000260518.2] WARNING, no entry stored in dbm for [ENSG00000237238.3] WARNING, no entry stored in dbm for [ENSG00000179362.14] WARNING, no entry stored in dbm for [ENSG00000282925.1] WARNING, no entry stored in dbm for [ENSG00000279021.1] WARNING, no entry stored in dbm for [ENSG00000184809.13] WARNING, no entry stored in dbm for [ENSG00000214252.4] WARNING, no entry stored in dbm for [ENSG00000253502.1] WARNING, no entry stored in dbm for [ENSG00000261819.1] WARNING, no entry stored in dbm for [ENSG00000268573.1] WARNING, no entry stored in dbm for [ENSG00000257252.6] WARNING, no entry stored in dbm for [ENSG00000259579.1] WARNING, no entry stored in dbm for [ENSG00000218537.1] WARNING, no entry stored in dbm for [ENSG00000168405.17] WARNING, no entry stored in dbm for [ENSG00000226835.3] WARNING, no entry stored in dbm for [ENSG00000240498.9] WARNING, no entry stored in dbm for [ENSG00000286216.1] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000246090.7] WARNING, no entry stored in dbm for [ENSG00000266456.1] WARNING, no entry stored in dbm for [ENSG00000279442.1] WARNING, no entry stored in dbm for [ENSG00000248409.2] WARNING, no entry stored in dbm for [ENSG00000250334.6] WARNING, no entry stored in dbm for [ENSG00000268119.6] WARNING, no entry stored in dbm for [ENSG00000235550.1] WARNING, no entry stored in dbm for [ENSG00000196593.9] WARNING, no entry stored in dbm for [ENSG00000273018.7] WARNING, no entry stored in dbm for [ENSG00000270402.1] WARNING, no entry stored in dbm for [ENSG00000231259.5] WARNING, no entry stored in dbm for [ENSG00000237666.2] WARNING, no entry stored in dbm for [ENSG00000201852.1] WARNING, no entry stored in dbm for [ENSG00000201622.1] WARNING, no entry stored in dbm for [ENSG00000212156.1] WARNING, no entry stored in dbm for [ENSG00000201298.1] WARNING, no entry stored in dbm for [ENSG00000200424.1] WARNING, no entry stored in dbm for [ENSG00000202229.1] WARNING, no entry stored in dbm for [ENSG00000238278.3] WARNING, no entry stored in dbm for [ENSG00000215241.4] WARNING, no entry stored in dbm for [ENSG00000234712.1] WARNING, no entry stored in dbm for [ENSG00000285847.2] WARNING, no entry stored in dbm for [ENSG00000270094.1] WARNING, no entry stored in dbm for [ENSG00000232576.2] WARNING, no entry stored in dbm for [ENSG00000230699.2] WARNING, no entry stored in dbm for [ENSG00000227062.2] WARNING, no entry stored in dbm for [ENSG00000258314.3] WARNING, no entry stored in dbm for [ENSG00000223774.5] WARNING, no entry stored in dbm for [ENSG00000285103.2] WARNING, no entry stored in dbm for [ENSG00000234640.1] WARNING, no entry stored in dbm for [ENSG00000228685.1] WARNING, no entry stored in dbm for [ENSG00000234851.4] WARNING, no entry stored in dbm for [ENSG00000286313.1] WARNING, no entry stored in dbm for [ENSG00000280423.1] WARNING, no entry stored in dbm for [ENSG00000234132.2] WARNING, no entry stored in dbm for [ENSG00000286215.1] WARNING, no entry stored in dbm for [ENSG00000288085.1] WARNING, no entry stored in dbm for [ENSG00000287361.1] WARNING, no entry stored in dbm for [ENSG00000235922.1] WARNING, no entry stored in dbm for [ENSG00000215030.5] WARNING, no entry stored in dbm for [ENSG00000233706.1] WARNING, no entry stored in dbm for [ENSG00000234134.1] WARNING, no entry stored in dbm for [ENSG00000272078.1] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000228436.3] WARNING, no entry stored in dbm for [ENSG00000287261.1] WARNING, no entry stored in dbm for [ENSG00000257275.6] WARNING, no entry stored in dbm for [ENSG00000273149.1] WARNING, no entry stored in dbm for [ENSG00000227240.2] WARNING, no entry stored in dbm for [ENSG00000278784.1] WARNING, no entry stored in dbm for [ENSG00000287047.1] WARNING, no entry stored in dbm for [ENSG00000258414.1] WARNING, no entry stored in dbm for [ENSG00000248587.8] WARNING, no entry stored in dbm for [ENSG00000258414.1] WARNING, no entry stored in dbm for [ENSG00000279406.1] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000280356.1] WARNING, no entry stored in dbm for [ENSG00000265018.6] WARNING, no entry stored in dbm for [ENSG00000215196.5] WARNING, no entry stored in dbm for [ENSG00000214548.18] WARNING, no entry stored in dbm for [ENSG00000213493.3] WARNING, no entry stored in dbm for [ENSG00000180139.11] WARNING, no entry stored in dbm for [ENSG00000249244.1] WARNING, no entry stored in dbm for [ENSG00000285062.1] WARNING, no entry stored in dbm for [ENSG00000275140.1] WARNING, no entry stored in dbm for [ENSG00000213016.3] WARNING, no entry stored in dbm for [ENSG00000237550.5] WARNING, no entry stored in dbm for [ENSG00000284964.1] WARNING, no entry stored in dbm for [ENSG00000250332.1] WARNING, no entry stored in dbm for [ENSG00000282572.2] WARNING, no entry stored in dbm for [ENSG00000277125.1] WARNING, no entry stored in dbm for [ENSG00000260550.2] WARNING, no entry stored in dbm for [ENSG00000255328.1] WARNING, no entry stored in dbm for [ENSG00000223509.8] WARNING, no entry stored in dbm for [ENSG00000205037.2] WARNING, no entry stored in dbm for [ENSG00000259925.1] WARNING, no entry stored in dbm for [ENSG00000283345.1] WARNING, no entry stored in dbm for [ENSG00000223509.8] WARNING, no entry stored in dbm for [ENSG00000215302.8] WARNING, no entry stored in dbm for [ENSG00000215302.8] WARNING, no entry stored in dbm for [ENSG00000236456.1] WARNING, no entry stored in dbm for [ENSG00000240774.1] WARNING, no entry stored in dbm for [ENSG00000253452.6] WARNING, no entry stored in dbm for [ENSG00000267852.1] WARNING, no entry stored in dbm for [ENSG00000278791.1] WARNING, no entry stored in dbm for [ENSG00000222022.1] WARNING, no entry stored in dbm for [ENSG00000170089.15] WARNING, no entry stored in dbm for [ENSG00000261363.2] WARNING, no entry stored in dbm for [ENSG00000224479.6] WARNING, no entry stored in dbm for [ENSG00000275322.1] WARNING, no entry stored in dbm for [ENSG00000260236.1] WARNING, no entry stored in dbm for [ENSG00000286436.1] WARNING, no entry stored in dbm for [ENSG00000241860.7] WARNING, no entry stored in dbm for [ENSG00000284648.1] WARNING, no entry stored in dbm for [ENSG00000284610.1] WARNING, no entry stored in dbm for [ENSG00000246541.2] WARNING, no entry stored in dbm for [ENSG00000286152.1] WARNING, no entry stored in dbm for [ENSG00000249741.2] WARNING, no entry stored in dbm for [ENSG00000248491.6] WARNING, no entry stored in dbm for [ENSG00000265401.1] WARNING, no entry stored in dbm for [ENSG00000241656.1] WARNING, no entry stored in dbm for [ENSG00000287589.1] WARNING, no entry stored in dbm for [ENSG00000244061.1] WARNING, no entry stored in dbm for [ENSG00000285012.1] WARNING, no entry stored in dbm for [ENSG00000239268.3] WARNING, no entry stored in dbm for [ENSG00000230393.1] WARNING, no entry stored in dbm for [ENSG00000230393.1] WARNING, no entry stored in dbm for [ENSG00000276538.1] WARNING, no entry stored in dbm for [ENSG00000224016.2] WARNING, no entry stored in dbm for [ENSG00000255829.1] WARNING, no entry stored in dbm for [ENSG00000187185.4] WARNING, no entry stored in dbm for [ENSG00000288620.1] WARNING, no entry stored in dbm for [ENSG00000288620.1] WARNING, no entry stored in dbm for [ENSG00000187953.10] WARNING, no entry stored in dbm for [ENSG00000239969.5] WARNING, no entry stored in dbm for [ENSG00000264151.6] WARNING, no entry stored in dbm for [ENSG00000288663.1] WARNING, no entry stored in dbm for [ENSG00000215520.3] WARNING, no entry stored in dbm for [ENSG00000234129.8] WARNING, no entry stored in dbm for [ENSG00000257337.7] WARNING, no entry stored in dbm for [ENSG00000253871.2] WARNING, no entry stored in dbm for [ENSG00000263624.1] WARNING, no entry stored in dbm for [ENSG00000254951.7] WARNING, no entry stored in dbm for [ENSG00000267390.1] WARNING, no entry stored in dbm for [ENSG00000288077.1] WARNING, no entry stored in dbm for [ENSG00000254485.5] WARNING, no entry stored in dbm for [ENSG00000260413.1] WARNING, no entry stored in dbm for [ENSG00000261273.1] WARNING, no entry stored in dbm for [ENSG00000251131.2] WARNING, no entry stored in dbm for [ENSG00000259429.5] WARNING, no entry stored in dbm for [ENSG00000274021.1] WARNING, no entry stored in dbm for [ENSG00000255621.1] WARNING, no entry stored in dbm for [ENSG00000258488.2] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000251079.6] WARNING, no entry stored in dbm for [ENSG00000268093.1] WARNING, no entry stored in dbm for [ENSG00000248898.3] WARNING, no entry stored in dbm for [ENSG00000267665.2] WARNING, no entry stored in dbm for [ENSG00000267665.2] WARNING, no entry stored in dbm for [ENSG00000242729.1] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000249641.2] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000241679.2] WARNING, no entry stored in dbm for [ENSG00000227359.1] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000261329.6] WARNING, no entry stored in dbm for [ENSG00000232386.9] WARNING, no entry stored in dbm for [ENSG00000186148.13] WARNING, no entry stored in dbm for [ENSG00000235497.5] WARNING, no entry stored in dbm for [ENSG00000258017.2] WARNING, no entry stored in dbm for [ENSG00000286068.1] WARNING, no entry stored in dbm for [ENSG00000249950.1] WARNING, no entry stored in dbm for [ENSG00000268120.1] WARNING, no entry stored in dbm for [ENSG00000277977.1] WARNING, no entry stored in dbm for [ENSG00000259720.2] WARNING, no entry stored in dbm for [ENSG00000261523.1] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000267523.1] WARNING, no entry stored in dbm for [ENSG00000259106.1] WARNING, no entry stored in dbm for [ENSG00000281920.1] WARNING, no entry stored in dbm for [ENSG00000236531.2] WARNING, no entry stored in dbm for [ENSG00000226824.7] WARNING, no entry stored in dbm for [ENSG00000229180.7] WARNING, no entry stored in dbm for [ENSG00000268189.2] WARNING, no entry stored in dbm for [ENSG00000268650.3] WARNING, no entry stored in dbm for [ENSG00000262879.6] WARNING, no entry stored in dbm for [ENSG00000266918.1] WARNING, no entry stored in dbm for [ENSG00000243004.6] WARNING, no entry stored in dbm for [ENSG00000230305.2] WARNING, no entry stored in dbm for [ENSG00000239556.4] WARNING, no entry stored in dbm for [ENSG00000214243.3] WARNING, no entry stored in dbm for [ENSG00000243554.1] WARNING, no entry stored in dbm for [ENSG00000238228.1] WARNING, no entry stored in dbm for [ENSG00000255230.1] WARNING, no entry stored in dbm for [ENSG00000268163.1] WARNING, no entry stored in dbm for [ENSG00000228113.7] WARNING, no entry stored in dbm for [ENSG00000231170.7] WARNING, no entry stored in dbm for [ENSG00000240216.7] WARNING, no entry stored in dbm for [ENSG00000279232.2] * STAR-Fusion complete. See output: /tmp/nxf.1qRPpdWzxa/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)