Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0fce724663fd5673357aee3c01c392/FFPE_V4_0001_RNA_0003_B23MHV2LT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/7256d239a82cd6f0be09ef914d7ae6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/7256d239a82cd6f0be09ef914d7ae6/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory