File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/4775589704a24e9dc6a2bab4fd1202/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bua-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/4775589704a24e9dc6a2bab4fd1202/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/4775589704a24e9dc6a2bab4fd1202/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/df471e4c5178df6c7b82c6f451337f/659_bua-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/75c270b2ae237f7c1c874336c32206/659_bua-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TPM3--NTRK1
starfusion
arriba
RARS1--WWC1
starfusion
arriba
CRACD--THEGL
starfusion
arriba
TLK2--AC240565.1
starfusion
ADAMTS2--RARS1
starfusion
arriba
AC013268.1--MALL
starfusion
TVP23C--CDRT4
arriba
ERBIN--ARHGAP26
arriba
TPM4--NTRK1
arriba
AVL9--SEPTIN7
arriba
AVL9--RNU6-1085P
arriba
AC092807.3--DDAH1
arriba
NTRK1--NUP210L
arriba
WWC1--ADAMTS2
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing TPM3--NTRK1:   0%|          | 0/14 [00:00<?, ?it/s]
Processing TPM3--NTRK1:   7%|▋         | 1/14 [00:00<00:01,  9.06it/s]
Processing RARS1--WWC1:   7%|▋         | 1/14 [00:00<00:01,  9.06it/s]
Processing RARS1--WWC1:  14%|█▍        | 2/14 [00:00<00:01,  9.35it/s]
Processing CRACD--THEGL:  14%|█▍        | 2/14 [00:00<00:01,  9.35it/s]
Processing CRACD--THEGL:  21%|██▏       | 3/14 [00:00<00:01,  9.44it/s]
Processing TLK2--AC240565.1:  21%|██▏       | 3/14 [00:00<00:01,  9.44it/s]
Processing TLK2--AC240565.1:  29%|██▊       | 4/14 [00:00<00:01,  9.48it/s]
Processing ADAMTS2--RARS1:  29%|██▊       | 4/14 [00:00<00:01,  9.48it/s]  
Processing ADAMTS2--RARS1:  36%|███▌      | 5/14 [00:00<00:00,  9.50it/s]
Processing AC013268.1--MALL:  36%|███▌      | 5/14 [00:00<00:00,  9.50it/s]
Processing AC013268.1--MALL:  43%|████▎     | 6/14 [00:00<00:00,  9.51it/s]
Processing TVP23C--CDRT4:  43%|████▎     | 6/14 [00:00<00:00,  9.51it/s]   
Processing TVP23C--CDRT4:  50%|█████     | 7/14 [00:00<00:00,  9.52it/s]
Processing ERBIN--ARHGAP26:  50%|█████     | 7/14 [00:00<00:00,  9.52it/s]
Processing ERBIN--ARHGAP26:  57%|█████▋    | 8/14 [00:00<00:00,  9.52it/s]
Processing TPM4--NTRK1:  57%|█████▋    | 8/14 [00:00<00:00,  9.52it/s]    
Processing TPM4--NTRK1:  64%|██████▍   | 9/14 [00:00<00:00,  9.51it/s]
Processing AVL9--SEPTIN7:  64%|██████▍   | 9/14 [00:00<00:00,  9.51it/s]
Processing AVL9--SEPTIN7:  71%|███████▏  | 10/14 [00:01<00:00,  9.52it/s]
Processing AVL9--RNU6-1085P:  71%|███████▏  | 10/14 [00:01<00:00,  9.52it/s]
Processing AVL9--RNU6-1085P:  79%|███████▊  | 11/14 [00:01<00:00,  9.53it/s]
Processing AC092807.3--DDAH1:  79%|███████▊  | 11/14 [00:01<00:00,  9.53it/s]
Processing AC092807.3--DDAH1:  86%|████████▌ | 12/14 [00:01<00:00,  9.54it/s]
Processing NTRK1--NUP210L:  86%|████████▌ | 12/14 [00:01<00:00,  9.54it/s]   
Processing NTRK1--NUP210L:  93%|█████████▎| 13/14 [00:01<00:00,  9.54it/s]
Processing WWC1--ADAMTS2:  93%|█████████▎| 13/14 [00:01<00:00,  9.54it/s] 
Processing WWC1--ADAMTS2: 100%|██████████| 14/14 [00:01<00:00,  9.55it/s]
Processing WWC1--ADAMTS2: 100%|██████████| 14/14 [00:01<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory