Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a9ef337838c273057a74f608268c67/FFPE_HD789_02_RNA_0014_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/020321ec8e16467f88b14a4c0689f4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/020321ec8e16467f88b14a4c0689f4/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory