Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/55de01631a076fee6bb7977ef79103/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/102424baddb85ca2d76f0f3bea318b/659_bGc-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/55de01631a076fee6bb7977ef79103/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/69eab680c8a5785ec8e66cd9783c99/659_bGc-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
KIF5B--RET
starfusion
arriba
NOTCH2--NBPF11
starfusion
GUSBP2--NAIP
starfusion
arriba
CLIC2--TMLHE-AS1
starfusion
arriba
TLK2--LINC01002
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGC3
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing KIF5B--RET:   0%|          | 0/28 [00:00<?, ?it/s]
Processing KIF5B--RET:   4%|▎         | 1/28 [00:00<00:02,  9.21it/s]
Processing NOTCH2--NBPF11:   4%|▎         | 1/28 [00:00<00:02,  9.21it/s]
Processing NOTCH2--NBPF11:   7%|▋         | 2/28 [00:00<00:02,  9.45it/s]
Processing GUSBP2--NAIP:   7%|▋         | 2/28 [00:00<00:02,  9.45it/s]  
Processing GUSBP2--NAIP:  11%|█         | 3/28 [00:00<00:02,  9.53it/s]
Processing CLIC2--TMLHE-AS1:  11%|█         | 3/28 [00:00<00:02,  9.53it/s]
Processing CLIC2--TMLHE-AS1:  14%|█▍        | 4/28 [00:00<00:02,  9.57it/s]
Processing TLK2--LINC01002:  14%|█▍        | 4/28 [00:00<00:02,  9.57it/s] 
Processing TLK2--LINC01002:  18%|█▊        | 5/28 [00:00<00:02,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  18%|█▊        | 5/28 [00:00<00:02,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  21%|██▏       | 6/28 [00:00<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  21%|██▏       | 6/28 [00:00<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  25%|██▌       | 7/28 [00:00<00:02,  9.61it/s]
Processing PCDHGB2--PCDHGC5:  25%|██▌       | 7/28 [00:00<00:02,  9.61it/s] 
Processing PCDHGB2--PCDHGC5:  29%|██▊       | 8/28 [00:00<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  29%|██▊       | 8/28 [00:00<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  32%|███▏      | 9/28 [00:00<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  32%|███▏      | 9/28 [00:00<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  36%|███▌      | 10/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  36%|███▌      | 10/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  39%|███▉      | 11/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  39%|███▉      | 11/28 [00:01<00:01,  9.63it/s] 
Processing PCDHGB2--PCDHGA9:  43%|████▎     | 12/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  43%|████▎     | 12/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  46%|████▋     | 13/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  46%|████▋     | 13/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  50%|█████     | 14/28 [00:01<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  50%|█████     | 14/28 [00:01<00:01,  9.63it/s] 
Processing PCDHGB2--PCDHGC3:  54%|█████▎    | 15/28 [00:01<00:01,  9.63it/s]
Processing TVP23C--CDRT4:  54%|█████▎    | 15/28 [00:01<00:01,  9.63it/s]   
Processing TVP23C--CDRT4:  57%|█████▋    | 16/28 [00:01<00:01,  9.63it/s]
Processing STX16--NPEPL1:  57%|█████▋    | 16/28 [00:01<00:01,  9.63it/s]
Processing STX16--NPEPL1:  61%|██████    | 17/28 [00:01<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA8:  61%|██████    | 17/28 [00:01<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA8:  64%|██████▍   | 18/28 [00:01<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA10:  64%|██████▍   | 18/28 [00:01<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA10:  68%|██████▊   | 19/28 [00:01<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC5:  68%|██████▊   | 19/28 [00:01<00:00,  9.63it/s] 
Processing PCDHGA2--PCDHGC5:  71%|███████▏  | 20/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC4:  71%|███████▏  | 20/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC4:  75%|███████▌  | 21/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB6:  75%|███████▌  | 21/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB6:  79%|███████▊  | 22/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA11:  79%|███████▊  | 22/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA11:  82%|████████▏ | 23/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA9:  82%|████████▏ | 23/28 [00:02<00:00,  9.63it/s] 
Processing PCDHGA2--PCDHGA9:  86%|████████▌ | 24/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB7:  86%|████████▌ | 24/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB7:  89%|████████▉ | 25/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA12:  89%|████████▉ | 25/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA12:  93%|█████████▎| 26/28 [00:02<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC3:  93%|█████████▎| 26/28 [00:02<00:00,  9.63it/s] 
Processing PCDHGA2--PCDHGC3:  96%|█████████▋| 27/28 [00:02<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  96%|█████████▋| 27/28 [00:02<00:00,  9.63it/s]    
Processing KLRC4--KLRK1: 100%|██████████| 28/28 [00:02<00:00,  9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 28/28 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory