Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/0f8b77a533c0f93889000a82149de0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/32473d0374abcf43973e4cfabf5269/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/0f8b77a533c0f93889000a82149de0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/dddecfed4a6c1f41ac206034711c4b/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 344382169
[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	344382169
Known Splicing Events:	340537978
Partial Novel Splicing Events:	1728090
Novel Splicing Events:	1964607
Filtered Splicing Events:	151494

Total splicing  Junctions:	630369
Known Splicing Junctions:	292025
Partial Novel Splicing Junctions:	175362
Novel Splicing Junctions:	162982

===================================================================
Create BED file ...
Create Interact file ...