File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a2ae7012856ed11d3a7b5f86d3007c/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bKP-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a2ae7012856ed11d3a7b5f86d3007c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a2ae7012856ed11d3a7b5f86d3007c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/71c32e55678a3705f854bf89e7065a/659_bKP-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/97cd34061b3fb610d7e35d833cfb09/659_bKP-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
LMNA--NTRK1
starfusion
arriba
TLK2--AC240565.1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
TVP23C--CDRT4
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing LMNA--NTRK1:   0%|          | 0/14 [00:00<?, ?it/s]
Processing LMNA--NTRK1:   7%|▋         | 1/14 [00:00<00:01,  9.22it/s]
Processing TLK2--AC240565.1:   7%|▋         | 1/14 [00:00<00:01,  9.22it/s]
Processing TLK2--AC240565.1:  14%|█▍        | 2/14 [00:00<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA8:  14%|█▍        | 2/14 [00:00<00:01,  9.47it/s]
Processing PCDHGB2--PCDHGA8:  21%|██▏       | 3/14 [00:00<00:01,  9.55it/s]
Processing PCDHGB2--PCDHGC4:  21%|██▏       | 3/14 [00:00<00:01,  9.55it/s]
Processing PCDHGB2--PCDHGC4:  29%|██▊       | 4/14 [00:00<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGC3:  29%|██▊       | 4/14 [00:00<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGC3:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]
Processing PCDHGB2--PCDHGC5:  36%|███▌      | 5/14 [00:00<00:00,  9.60it/s]
Processing PCDHGB2--PCDHGC5:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  43%|████▎     | 6/14 [00:00<00:00,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s]
Processing PCDHGB2--PCDHGB7:  50%|█████     | 7/14 [00:00<00:00,  9.62it/s] 
Processing PCDHGB2--PCDHGB7:  57%|█████▋    | 8/14 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  57%|█████▋    | 8/14 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  64%|██████▍   | 9/14 [00:00<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  71%|███████▏  | 10/14 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  71%|███████▏  | 10/14 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  79%|███████▊  | 11/14 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  79%|███████▊  | 11/14 [00:01<00:00,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  86%|████████▌ | 12/14 [00:01<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  86%|████████▌ | 12/14 [00:01<00:00,  9.63it/s]    
Processing TVP23C--CDRT4:  93%|█████████▎| 13/14 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  93%|█████████▎| 13/14 [00:01<00:00,  9.63it/s] 
Processing KLRC4--KLRK1: 100%|██████████| 14/14 [00:01<00:00,  9.64it/s]
Processing KLRC4--KLRK1: 100%|██████████| 14/14 [00:01<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory