Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/cc59f3dd7bbb552292712142f0678b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/cc59f3dd7bbb552292712142f0678b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/5ef34901cf4eadded45cac52de7e0c/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/6a433b48423cb1b81bcb42ff22b6ec/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 316944653
[W::hts_idx_load3] The index file is older than the data file: 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	316944653
Known Splicing Events:	311036466
Partial Novel Splicing Events:	1715133
Novel Splicing Events:	4048764
Filtered Splicing Events:	144290

Total splicing  Junctions:	555362
Known Splicing Junctions:	264018
Partial Novel Splicing Junctions:	152642
Novel Splicing Junctions:	138702

===================================================================
Create BED file ...
Create Interact file ...