Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/d9f35a84c74eca73f1d6f346f6701a/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ead7548c923424c68495c616845975/ref_annot.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/621e5b8ae95f3f22053b587be30d84/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/621e5b8ae95f3f22053b587be30d84/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/a15f0a3173a89e99e0e7a9b36c32a0/659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
processing 659_bua-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam ... Finished