Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/6d0fdaa8eb8e4173c333e1b3168f69/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/bfdc713ff5ad6aaa77d3db51a6e8d5/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/6d0fdaa8eb8e4173c333e1b3168f69/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
paired = 29940
unpaired = 4243
MERGED PAIRED END READS = 29940
MATES PROCESSED = 64123
TOTAL READS     = 34183
DISTINCT READS  = 7531
DISTINCT COUNTS = 98
MAX COUNT       = 3405
COUNTS OF 1     = 5168
MAX TERMS       = 42
OBSERVED COUNTS (3406)
1	5168
2	1018
3	377
4	218
5	120
6	101
7	78
8	50
9	42
10	32
11	37
12	19
13	29
14	19
15	16
16	14
17	6
18	18
19	6
20	9
21	7
22	10
23	4
24	4
25	7
26	6
27	8
28	6
29	4
30	3
31	1
32	3
33	1
34	3
35	1
36	4
37	3
38	1
39	3
40	1
41	1
42	1
43	2
45	1
46	1
47	2
49	4
52	4
53	2
55	1
56	1
57	1
58	1
59	2
60	1
61	1
63	1
65	1
67	1
68	1
73	3
74	1
76	1
77	3
80	1
81	1
83	1
87	1
92	1
96	1
105	1
106	1
107	1
112	1
116	1
118	2
125	1
127	1
128	1
130	1
142	1
145	1
151	1
174	1
175	1
181	1
209	1
235	1
249	1
265	1
303	2
332	1
346	1
566	1
1139	1
2322	1
2796	1
3405	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]